Wall clock time and date at job start Mon Mar 30 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.52999 * 109.47117 * 274.99668 * 13 12 2 15 15 C 1.53001 * 109.47172 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46763 * 60.00193 * 15 14 13 17 17 C 1.53001 * 109.46763 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47243 * 60.00210 * 16 15 14 19 19 C 1.52999 * 109.47294 * 299.99490 * 16 15 14 20 20 C 1.53001 * 109.47374 * 154.99570 * 13 12 2 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 26 26 H 1.09001 * 109.47092 * 34.99746 * 13 12 2 27 27 H 1.09001 * 109.47202 * 300.00010 * 14 13 12 28 28 H 1.09001 * 109.46980 * 59.99898 * 14 13 12 29 29 H 1.08996 * 109.46924 * 300.00088 * 15 14 13 30 30 H 1.08999 * 109.46953 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.46974 * 180.02562 * 17 16 15 32 32 H 1.08998 * 109.47478 * 299.99779 * 17 16 15 33 33 H 1.09001 * 109.47343 * 60.00071 * 17 16 15 34 34 H 1.09001 * 109.46799 * 299.99345 * 18 16 15 35 35 H 1.08999 * 109.47513 * 59.99603 * 18 16 15 36 36 H 1.09001 * 109.47170 * 179.97438 * 18 16 15 37 37 H 1.08996 * 109.47465 * 300.00762 * 19 16 15 38 38 H 1.09001 * 109.47156 * 180.02562 * 19 16 15 39 39 H 1.08998 * 109.46904 * 300.00389 * 20 13 12 40 40 H 1.09001 * 109.46867 * 60.00038 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 3.4111 0.9808 2.3224 15 6 3.4763 1.9343 3.5172 16 6 3.3707 1.1323 4.8159 17 6 3.4364 2.0857 6.0107 18 6 4.5285 0.1353 4.8953 19 6 2.0420 0.3741 4.8404 20 6 1.9771 -0.5798 3.6453 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 2.9173 -1.1205 1.0286 26 1 1.2577 0.9328 2.2907 27 1 4.2360 0.2705 2.3785 28 1 3.4862 1.5524 1.3973 29 1 2.6515 2.6445 3.4606 30 1 4.4230 2.4741 3.5000 31 1 3.3616 1.5144 6.9359 32 1 4.3832 2.6256 5.9931 33 1 2.6118 2.7963 5.9544 34 1 4.4820 -0.5439 4.0440 35 1 5.4750 0.6755 4.8778 36 1 4.4535 -0.4357 5.8207 37 1 1.2172 1.0843 4.7838 38 1 1.9666 -0.1969 5.7658 39 1 1.0306 -1.1201 3.6627 40 1 2.8020 -1.2902 3.7015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070623380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:44 Heat of formation + Delta-G solvation = -34.808051 kcal Electronic energy + Delta-G solvation = -16485.810116 eV Core-core repulsion = 14105.876092 eV Total energy + Delta-G solvation = -2379.934024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38779 -35.77406 -33.04694 -30.88015 -30.43894 -27.79997 -27.26173 -25.27645 -24.39056 -22.37126 -20.62929 -19.53092 -18.25873 -16.39360 -15.12062 -14.86345 -14.63124 -14.05468 -13.94779 -13.61626 -13.30365 -12.59296 -12.31716 -12.12081 -12.01174 -11.69684 -11.62214 -11.36525 -11.24694 -10.95436 -10.81255 -10.72521 -10.54995 -10.32550 -10.22035 -10.07804 -9.85968 -9.70383 -9.50251 -8.78627 -8.43543 -7.13779 -5.99156 -4.05313 3.32744 3.37094 3.39986 4.42633 4.82383 4.85123 4.93500 5.31299 5.35802 5.38401 5.56303 5.59563 5.68253 5.74127 5.82550 5.83851 5.88135 5.92676 6.09522 6.15468 6.18724 6.24362 6.34945 6.36818 6.48861 6.54653 6.63568 6.83482 6.86932 6.96858 7.21174 7.30559 7.59326 7.82294 7.96085 8.32507 8.48005 8.75637 9.06780 9.60495 11.07123 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048247 B = 0.006045 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.210442 B = 4630.486927 C = 4732.918972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.686 5.686 13 C 0.091 3.909 14 C -0.148 4.148 15 C -0.103 4.103 16 C -0.065 4.065 17 C -0.140 4.140 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.107 4.107 21 H 0.003 0.997 22 H 0.030 0.970 23 H 0.079 0.921 24 H 0.261 0.739 25 H 0.329 0.671 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 1.319 13.851 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.020 4.020 14 C -0.187 4.187 15 C -0.141 4.141 16 C -0.065 4.065 17 C -0.198 4.198 18 C -0.200 4.200 19 C -0.144 4.144 20 C -0.145 4.145 21 H 0.022 0.978 22 H 0.049 0.951 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.778 1.182 13.847 14.401 hybrid contribution 1.073 0.179 -1.151 1.584 sum 4.851 1.361 12.696 13.659 Atomic orbital electron populations 1.21723 0.98114 0.99224 0.99197 1.19074 0.92380 0.92414 0.85671 0.98108 1.21248 1.31338 1.12423 0.90580 0.92400 1.24913 0.95092 0.95005 0.98987 1.69888 1.36707 1.22906 1.23469 0.86606 0.79040 0.79812 0.82191 1.20221 1.21335 1.20390 1.60803 1.31884 1.32732 1.06072 1.21497 0.95451 0.93440 0.91648 1.22320 0.99506 0.99014 0.97858 1.21531 1.01064 0.97576 0.93908 1.20534 0.95699 0.95374 0.94913 1.21868 1.01357 0.99018 0.97512 1.21955 0.97250 0.99045 1.01755 1.21591 0.96318 0.98281 0.98210 1.21559 1.01865 0.97606 0.93439 0.97797 0.95086 0.90241 0.92942 0.85403 0.91483 0.92121 0.91894 0.92295 0.92751 0.93021 0.93037 0.92868 0.91648 0.93277 0.93236 0.92309 0.92559 0.91886 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.17 37.16 0.34 -2.83 16 2 C 0.21 5.43 2.41 -68.87 -0.17 5.27 16 3 H 0.00 0.04 7.11 -51.93 -0.37 -0.33 16 4 C -0.52 -14.34 8.59 -34.44 -0.30 -14.64 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.12 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.69 -14.78 6.05 -100.96 -0.61 -15.39 16 13 C 0.09 1.63 2.28 -67.71 -0.15 1.48 16 14 C -0.15 -2.43 4.88 -26.73 -0.13 -2.56 16 15 C -0.10 -1.41 4.73 -26.73 -0.13 -1.53 16 16 C -0.07 -0.78 0.77 -154.51 -0.12 -0.90 16 17 C -0.14 -1.45 8.47 37.16 0.31 -1.14 16 18 C -0.14 -1.64 7.78 37.16 0.29 -1.36 16 19 C -0.11 -1.35 4.73 -26.71 -0.13 -1.48 16 20 C -0.11 -1.62 5.26 -26.71 -0.14 -1.76 16 21 H 0.00 0.07 7.43 -51.93 -0.39 -0.31 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.33 6.97 7.96 -39.29 -0.31 6.66 16 26 H 0.07 1.33 7.11 -51.93 -0.37 0.96 16 27 H 0.06 0.96 6.42 -51.93 -0.33 0.63 16 28 H 0.06 1.18 7.43 -51.93 -0.39 0.80 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.82 4.81 -51.93 -0.25 0.57 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.88 6.43 -51.93 -0.33 0.54 16 LS Contribution 298.87 15.07 4.50 4.50 Total: -1.00 -27.94 298.87 -8.15 -36.09 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.24 Total: 3.27 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -0.41 Total: -19.82 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.02 Total: -40.50 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.94 -8.15 -36.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070623380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.285 kcal (2) G-P(sol) polarization free energy of solvation -27.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds