Wall clock time and date at job start Mon Mar 30 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.52999 * 109.47117 * 274.99668 * 13 12 2 15 15 C 1.53001 * 109.47172 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46763 * 60.00193 * 15 14 13 17 17 C 1.53001 * 109.46763 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47243 * 60.00210 * 16 15 14 19 19 C 1.52999 * 109.47294 * 299.99490 * 16 15 14 20 20 C 1.53001 * 109.47374 * 154.99570 * 13 12 2 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 26 26 H 1.09001 * 109.47092 * 34.99746 * 13 12 2 27 27 H 1.09001 * 109.47202 * 300.00010 * 14 13 12 28 28 H 1.09001 * 109.46980 * 59.99898 * 14 13 12 29 29 H 1.08996 * 109.46924 * 300.00088 * 15 14 13 30 30 H 1.08999 * 109.46953 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.46974 * 180.02562 * 17 16 15 32 32 H 1.08998 * 109.47478 * 299.99779 * 17 16 15 33 33 H 1.09001 * 109.47343 * 60.00071 * 17 16 15 34 34 H 1.09001 * 109.46799 * 299.99345 * 18 16 15 35 35 H 1.08999 * 109.47513 * 59.99603 * 18 16 15 36 36 H 1.09001 * 109.47170 * 179.97438 * 18 16 15 37 37 H 1.08996 * 109.47465 * 300.00762 * 19 16 15 38 38 H 1.09001 * 109.47156 * 180.02562 * 19 16 15 39 39 H 1.08998 * 109.46904 * 300.00389 * 20 13 12 40 40 H 1.09001 * 109.46867 * 60.00038 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 3.4111 0.9808 2.3224 15 6 3.4763 1.9343 3.5172 16 6 3.3707 1.1323 4.8159 17 6 3.4364 2.0857 6.0107 18 6 4.5285 0.1353 4.8953 19 6 2.0420 0.3741 4.8404 20 6 1.9771 -0.5798 3.6453 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 2.9173 -1.1205 1.0286 26 1 1.2577 0.9328 2.2907 27 1 4.2360 0.2705 2.3785 28 1 3.4862 1.5524 1.3973 29 1 2.6515 2.6445 3.4606 30 1 4.4230 2.4741 3.5000 31 1 3.3616 1.5144 6.9359 32 1 4.3832 2.6256 5.9931 33 1 2.6118 2.7963 5.9544 34 1 4.4820 -0.5439 4.0440 35 1 5.4750 0.6755 4.8778 36 1 4.4535 -0.4357 5.8207 37 1 1.2172 1.0843 4.7838 38 1 1.9666 -0.1969 5.7658 39 1 1.0306 -1.1201 3.6627 40 1 2.8020 -1.2902 3.7015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070623380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:44 Heat of formation + Delta-G solvation = -50.745240 kcal Electronic energy + Delta-G solvation = -16486.501204 eV Core-core repulsion = 14105.876092 eV Total energy + Delta-G solvation = -2380.625112 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59856 -37.46661 -34.86322 -32.55385 -31.66437 -29.50576 -28.13223 -27.34231 -25.78778 -23.60218 -22.19200 -21.33035 -19.43072 -18.37238 -16.85651 -16.40115 -15.72410 -15.65334 -15.38200 -14.82554 -14.78123 -14.17178 -13.88140 -13.51803 -13.14681 -13.08138 -12.84957 -12.76483 -12.68584 -12.58550 -12.49754 -12.23738 -12.19492 -12.06410 -11.84470 -11.54537 -11.11918 -10.96660 -10.91521 -10.81338 -10.55625 -8.93629 -8.13045 -6.27359 1.41546 1.43725 1.51349 2.41333 3.15205 3.58345 3.79095 3.82888 4.07167 4.17406 4.37586 4.48335 4.55239 4.63137 4.65885 4.78069 4.83280 4.90301 4.92087 4.97991 5.08017 5.10378 5.11995 5.19256 5.22821 5.25228 5.28153 5.28420 5.38598 5.50006 5.54886 5.61212 5.68768 5.74129 5.88099 6.22405 6.52265 6.82190 7.04498 7.43244 8.92574 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048247 B = 0.006045 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.210442 B = 4630.486927 C = 4732.918972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.219 3.781 3 H -0.032 1.032 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.685 5.685 13 C 0.090 3.910 14 C -0.140 4.140 15 C -0.099 4.099 16 C -0.062 4.062 17 C -0.137 4.137 18 C -0.142 4.142 19 C -0.102 4.102 20 C -0.098 4.098 21 H 0.017 0.983 22 H 0.026 0.974 23 H 0.056 0.944 24 H 0.262 0.738 25 H 0.330 0.670 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 0.679 15.251 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 H -0.014 1.014 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.314 5.314 13 C -0.020 4.020 14 C -0.179 4.179 15 C -0.137 4.137 16 C -0.062 4.062 17 C -0.194 4.194 18 C -0.199 4.199 19 C -0.140 4.140 20 C -0.136 4.136 21 H 0.036 0.964 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.148 0.852 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.773 0.540 15.271 16.008 hybrid contribution 0.755 0.401 -1.562 1.781 sum 5.529 0.942 13.708 14.811 Atomic orbital electron populations 1.21554 0.98158 0.98682 0.98735 1.18845 0.92311 0.90808 0.87039 1.01415 1.21578 1.31654 1.12653 0.91721 0.92368 1.25749 0.95172 0.95676 1.02082 1.70023 1.37533 1.24116 1.24185 0.85541 0.78714 0.78664 0.78266 1.19613 1.20902 1.19576 1.60756 1.32013 1.33176 1.05447 1.21570 0.95539 0.93162 0.91762 1.22191 0.98721 0.99228 0.97776 1.21515 1.01438 0.97079 0.93674 1.20522 0.95543 0.95622 0.94542 1.21825 1.01827 0.98739 0.96984 1.21939 0.97239 0.98776 1.01929 1.21579 0.96743 0.97916 0.97742 1.21473 1.01709 0.97804 0.92625 0.96361 0.95433 0.92552 0.92871 0.85242 0.93723 0.91303 0.95255 0.92978 0.91593 0.91584 0.92285 0.92891 0.93031 0.92523 0.91693 0.92677 0.90346 0.92747 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.90 9.17 71.98 0.66 -5.24 16 2 C 0.22 11.53 2.41 44.17 0.11 11.64 16 3 H -0.03 -1.85 7.11 -2.39 -0.02 -1.87 16 4 C -0.54 -30.28 8.59 25.60 0.22 -30.06 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.17 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 8 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 N -0.68 -29.99 6.05 -473.32 -2.86 -32.85 16 13 C 0.09 3.28 2.28 44.92 0.10 3.38 16 14 C -0.14 -4.65 4.88 30.59 0.15 -4.50 16 15 C -0.10 -2.61 4.73 30.59 0.14 -2.46 16 16 C -0.06 -1.34 0.77 -52.18 -0.04 -1.38 16 17 C -0.14 -2.38 8.47 71.98 0.61 -1.77 16 18 C -0.14 -2.85 7.78 71.98 0.56 -2.29 16 19 C -0.10 -2.37 4.73 30.61 0.14 -2.22 16 20 C -0.10 -2.86 5.26 30.61 0.16 -2.70 16 21 H 0.02 0.85 7.43 -2.39 -0.02 0.83 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 24 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 25 H 0.33 14.17 7.96 -89.69 -0.71 13.45 16 26 H 0.04 1.82 7.11 -2.39 -0.02 1.80 16 27 H 0.07 2.15 6.42 -2.39 -0.02 2.14 16 28 H 0.03 1.14 7.43 -2.39 -0.02 1.13 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.18 4.81 -2.39 -0.01 1.16 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.87 6.43 -2.39 -0.02 1.85 16 Total: -1.00 -60.17 298.87 2.95 -57.22 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.27 Total: 19.83 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.27 Total: -36.47 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -2.62 Total: -86.76 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -60.17 2.95 -57.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070623380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.477 kcal (2) G-P(sol) polarization free energy of solvation -60.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds