Wall clock time and date at job start Mon Mar 30 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46795 * 2 1 4 4 C 1.36937 * 120.00066 * 264.51924 * 3 2 1 5 5 H 1.07994 * 120.00198 * 146.49709 * 4 3 2 6 6 C 1.38810 * 119.99798 * 326.49113 * 4 3 2 7 7 N 1.31624 * 120.00003 * 337.38597 * 6 4 3 8 8 Si 1.86800 * 120.00046 * 157.38733 * 6 4 3 9 9 H 1.48496 * 109.47178 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46968 * 120.00191 * 8 6 4 11 11 H 1.48506 * 109.46872 * 240.00257 * 8 6 4 12 12 C 1.46499 * 119.99944 * 84.51629 * 3 2 1 13 13 H 1.09001 * 109.47205 * 359.97438 * 12 3 2 14 14 C 1.53009 * 109.46929 * 240.00016 * 12 3 2 15 15 C 1.53008 * 109.46542 * 179.97438 * 14 12 3 16 16 C 1.52997 * 109.47243 * 60.00276 * 15 14 12 17 17 H 1.08999 * 109.46908 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47311 * 59.99258 * 16 15 14 19 19 C 1.52996 * 109.46890 * 299.99443 * 16 15 14 20 20 H 1.08994 * 109.47739 * 300.00302 * 19 16 15 21 21 C 1.52998 * 109.47256 * 179.97438 * 19 16 15 22 22 C 1.52997 * 109.47095 * 120.00146 * 12 3 2 23 23 H 1.09003 * 109.47284 * 299.99613 * 1 2 3 24 24 H 1.09002 * 109.47463 * 60.00241 * 1 2 3 25 25 H 1.09005 * 109.46788 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47176 * 239.99980 * 2 1 3 27 27 H 1.08997 * 109.47108 * 120.00014 * 2 1 3 28 28 H 0.96998 * 119.99805 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47113 * 60.00593 * 14 12 3 30 30 H 1.08991 * 109.47204 * 299.99907 * 14 12 3 31 31 H 1.09001 * 109.47444 * 299.99776 * 15 14 12 32 32 H 1.09001 * 109.46358 * 180.02562 * 15 14 12 33 33 H 1.08999 * 109.47485 * 300.00757 * 18 16 15 34 34 H 1.09008 * 109.47005 * 60.00493 * 18 16 15 35 35 H 1.08993 * 109.47214 * 180.02562 * 18 16 15 36 36 H 1.09005 * 109.47058 * 60.00096 * 21 19 16 37 37 H 1.09001 * 109.47633 * 179.97438 * 21 19 16 38 38 H 1.09001 * 109.47190 * 300.00125 * 21 19 16 39 39 H 1.08991 * 109.47276 * 59.99947 * 22 12 3 40 40 H 1.08998 * 109.46810 * 299.99827 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3533 1.9891 -1.1805 5 1 2.1909 3.0492 -1.3071 6 6 2.9018 1.2425 -2.2143 7 7 3.5065 0.1028 -1.9541 8 14 2.7816 1.8555 -3.9748 9 1 2.0584 3.1522 -3.9992 10 1 4.1469 2.0389 -4.5293 11 1 2.0433 0.8620 -4.7954 12 6 2.1481 2.1123 1.2629 13 1 1.8370 1.4710 2.0876 14 6 1.2615 3.3587 1.2242 15 6 1.3966 4.1218 2.5435 16 6 2.8548 4.5392 2.7442 17 1 2.9509 5.0832 3.6838 18 6 3.2914 5.4398 1.5869 19 6 3.7413 3.2929 2.7829 20 1 3.4304 2.6512 3.6072 21 6 5.1996 3.7103 2.9829 22 6 3.6064 2.5298 1.4630 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8894 -0.4190 -2.6765 29 1 0.2226 3.0612 1.0817 30 1 1.5722 4.0001 0.3996 31 1 1.0856 3.4801 3.3679 32 1 0.7646 5.0094 2.5160 33 1 3.1951 4.8962 0.6471 34 1 2.6598 6.3279 1.5594 35 1 4.3303 5.7368 1.7296 36 1 5.2962 4.2542 3.9226 37 1 5.8312 2.8223 3.0109 38 1 5.5103 4.3517 2.1582 39 1 3.9171 3.1712 0.6383 40 1 4.2379 1.6418 1.4905 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082841890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:02 Heat of formation + Delta-G solvation = -24.164074 kcal Electronic energy + Delta-G solvation = -17069.985026 eV Core-core repulsion = 14690.512559 eV Total energy + Delta-G solvation = -2379.472466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41713 -37.28988 -33.71812 -32.97740 -32.24509 -29.85997 -28.04944 -26.44880 -25.94531 -23.21632 -22.30543 -21.48900 -19.29234 -18.02873 -16.92201 -16.36853 -15.90535 -15.77687 -15.50555 -14.52624 -14.50220 -14.22431 -13.61016 -13.50137 -13.31455 -13.21605 -12.94017 -12.72784 -12.65107 -12.52601 -12.48512 -12.14374 -12.04618 -11.92016 -11.72052 -11.46821 -11.27883 -10.84073 -10.81778 -10.74460 -10.38573 -8.50035 -7.76284 -5.30558 1.42987 1.46946 1.55857 2.53812 3.29601 3.59417 3.93287 3.98862 4.18361 4.39671 4.46754 4.55449 4.59299 4.64845 4.72302 4.81249 4.82641 4.91827 4.92702 4.95032 5.01221 5.12129 5.16191 5.19270 5.24696 5.26125 5.28992 5.37902 5.52296 5.53285 5.62951 5.64273 5.73867 5.78294 5.87049 5.92205 6.53210 7.24315 7.98222 8.48138 9.21283 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.009839 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.391320 B = 2845.260848 C = 3178.591714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.236 4.236 5 H 0.055 0.945 6 C -0.046 4.046 7 N -0.922 5.922 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.295 1.295 11 H -0.292 1.292 12 C 0.171 3.829 13 H 0.046 0.954 14 C -0.116 4.116 15 C -0.105 4.105 16 C -0.077 4.077 17 H 0.086 0.914 18 C -0.150 4.150 19 C -0.083 4.083 20 H 0.068 0.932 21 C -0.142 4.142 22 C -0.102 4.102 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.017 0.983 28 H 0.247 0.753 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 7.505 10.002 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 N -0.318 5.318 4 C -0.367 4.367 5 H 0.073 0.927 6 C -0.242 4.242 7 N -0.568 5.568 8 Si 0.776 3.224 9 H -0.194 1.194 10 H -0.222 1.222 11 H -0.219 1.219 12 C 0.065 3.935 13 H 0.065 0.935 14 C -0.155 4.155 15 C -0.143 4.143 16 C -0.096 4.096 17 H 0.105 0.895 18 C -0.207 4.207 19 C -0.102 4.102 20 H 0.086 0.914 21 C -0.199 4.199 22 C -0.141 4.141 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.149 7.393 9.897 12.539 hybrid contribution 0.194 -0.276 -1.424 1.463 sum -1.956 7.117 8.473 11.237 Atomic orbital electron populations 1.22145 0.98375 1.00017 1.00154 1.20887 0.91761 0.86392 1.00067 1.44203 1.74075 1.11439 1.02080 1.19126 1.32773 0.93618 0.91189 0.92689 1.25650 0.98007 0.98554 1.01965 1.70141 1.38403 1.17054 1.31193 0.85522 0.76890 0.77994 0.82006 1.19414 1.22188 1.21867 1.20543 0.93397 0.92360 0.87197 0.93535 1.21829 0.98543 0.97324 0.97826 1.21533 0.96462 0.99705 0.96607 1.21069 0.94202 0.95232 0.99056 0.89535 1.21955 1.01214 0.99071 0.98489 1.21157 0.95950 0.96541 0.96515 0.91405 1.21832 0.95337 1.00873 1.01899 1.21816 0.97513 0.97864 0.96917 0.93564 0.94813 0.92610 0.91539 0.96504 0.94358 0.93879 0.93474 0.91619 0.91136 0.94210 0.92204 0.92214 0.90949 0.93834 0.93034 0.93743 0.96171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.98 10.23 71.98 0.74 -5.24 16 2 C 0.13 6.57 5.90 86.38 0.51 7.08 16 3 N -0.60 -29.77 2.40 -678.03 -1.62 -31.40 16 4 C -0.24 -12.89 8.25 84.03 0.69 -12.19 16 5 H 0.06 3.02 6.83 -2.91 -0.02 3.00 16 6 C -0.05 -2.58 4.91 84.86 0.42 -2.16 16 7 N -0.92 -54.74 11.34 21.65 0.25 -54.49 16 8 Si 0.95 45.51 29.61 68.60 2.03 47.54 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 12 C 0.17 7.10 2.63 44.99 0.12 7.22 16 13 H 0.05 1.87 7.87 -2.39 -0.02 1.85 16 14 C -0.12 -4.18 4.90 30.60 0.15 -4.03 16 15 C -0.11 -2.86 5.45 30.60 0.17 -2.69 16 16 C -0.08 -2.00 2.72 -10.80 -0.03 -2.03 16 17 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 18 C -0.15 -4.11 8.15 71.98 0.59 -3.52 16 19 C -0.08 -2.45 2.50 -10.78 -0.03 -2.47 16 20 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 21 C -0.14 -3.73 8.84 71.98 0.64 -3.10 16 22 C -0.10 -4.08 4.18 30.61 0.13 -3.96 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.07 3.71 5.33 -2.39 -0.01 3.70 16 27 H 0.02 0.79 8.04 -2.39 -0.02 0.77 16 28 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.87 5.26 -2.39 -0.01 1.86 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.35 4.81 -2.39 -0.01 1.34 16 34 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.06 1.50 6.43 -2.39 -0.02 1.48 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.39 6.43 -2.39 -0.02 1.38 16 39 H 0.04 1.98 5.95 -2.39 -0.01 1.97 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -60.32 296.27 5.72 -54.60 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.98 Total: 10.86 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 4.09 Total: -27.11 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -1.38 Total: -85.89 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -60.32 5.72 -54.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082841890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.438 kcal (2) G-P(sol) polarization free energy of solvation -60.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds