Wall clock time and date at job start Mon Mar 30 2020 03:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86803 * 120.00075 * 2 1 4 4 H 1.48499 * 109.47249 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47130 * 300.00632 * 3 2 1 6 6 H 1.48497 * 109.46800 * 60.00202 * 3 2 1 7 7 C 1.40121 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.46196 * 120.00235 * 359.97438 * 7 2 1 10 10 O 1.21723 * 119.99772 * 0.02562 * 9 7 2 11 11 N 1.34769 * 119.99772 * 180.27628 * 9 7 2 12 12 C 1.39081 * 119.99823 * 174.63115 * 11 9 7 13 13 C 1.39136 * 119.69627 * 185.10398 * 12 11 9 14 14 C 1.38379 * 119.12140 * 179.73220 * 13 12 11 15 15 C 1.38795 * 118.51504 * 0.53403 * 14 13 12 16 16 C 1.38307 * 119.31425 * 359.72659 * 15 14 13 17 17 Cl 1.73601 * 119.58782 * 179.97438 * 16 15 14 18 18 N 1.31995 * 120.82776 * 0.02562 * 16 15 14 19 19 H 0.97000 * 119.99439 * 359.97438 * 1 2 3 20 20 H 0.97001 * 120.00752 * 354.63820 * 11 9 7 21 21 H 1.08000 * 120.43897 * 0.02562 * 13 12 11 22 22 H 1.08000 * 120.73770 * 180.26211 * 14 13 12 23 23 H 1.07999 * 120.33949 * 179.75463 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.7005 1.3464 -0.0006 5 1 1.8816 2.3966 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2135 -0.0001 9 6 1.2761 -2.4796 -0.0005 10 8 0.0588 -2.4796 -0.0005 11 7 1.9500 -3.6467 0.0046 12 6 1.2588 -4.8483 0.1173 13 6 1.9650 -6.0419 0.2292 14 6 1.2652 -7.2300 0.3463 15 6 -0.1220 -7.1857 0.3363 16 6 -0.7596 -5.9642 0.2163 17 17 -2.4944 -5.9007 0.2023 18 7 -0.0657 -4.8464 0.1112 19 1 -0.4849 0.8401 0.0004 20 1 2.9171 -3.6488 -0.0703 21 1 3.0450 -6.0407 0.2294 22 1 1.7870 -8.1710 0.4389 23 1 -0.6974 -8.0956 0.4218 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083342436.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:42 Heat of formation + Delta-G solvation = -23.732592 kcal Electronic energy + Delta-G solvation = -12841.288363 eV Core-core repulsion = 10293.785483 eV Total energy + Delta-G solvation = -2547.502880 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.36549 -39.11503 -37.49314 -35.37938 -34.48722 -33.31323 -30.87056 -28.39105 -24.77595 -24.22053 -21.88208 -19.65474 -18.45144 -17.70519 -16.99880 -16.74775 -15.94277 -15.87534 -15.57763 -14.55951 -14.41581 -14.04533 -13.18279 -12.97447 -12.95579 -12.69669 -12.66918 -12.19902 -11.98219 -11.31927 -10.92981 -10.63145 -10.60811 -9.52316 -8.98171 -8.32345 -6.92937 0.10449 0.47018 0.93285 1.39977 1.40643 1.58723 2.19580 2.39689 2.66208 2.88385 3.65067 3.79336 4.07524 4.23676 4.34000 4.53495 4.99566 5.21165 5.26762 5.54055 5.69714 6.06112 6.17854 6.77520 6.85495 7.49657 8.43339 8.60921 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.042699 B = 0.007549 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.600686 B = 3708.447015 C = 4351.242767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.025 3.975 3 Si 1.004 2.996 4 H -0.242 1.242 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.564 4.564 8 H 0.097 0.903 9 C 0.514 3.486 10 O -0.564 6.564 11 N -0.669 5.669 12 C 0.366 3.634 13 C -0.215 4.215 14 C -0.021 4.021 15 C -0.201 4.201 16 C 0.178 3.822 17 Cl -0.056 7.056 18 N -0.534 5.534 19 H 0.276 0.724 20 H 0.419 0.581 21 H 0.175 0.825 22 H 0.198 0.802 23 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -12.489 0.779 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.164 1.164 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.600 4.600 8 H 0.115 0.885 9 C 0.318 3.682 10 O -0.443 6.443 11 N -0.315 5.315 12 C 0.133 3.867 13 C -0.239 4.239 14 C -0.046 4.046 15 C -0.224 4.224 16 C 0.012 3.988 17 Cl -0.028 7.028 18 N -0.252 5.252 19 H 0.086 0.914 20 H 0.257 0.743 21 H 0.193 0.807 22 H 0.215 0.785 23 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.714 -11.446 0.700 12.398 hybrid contribution 0.395 0.346 -0.014 0.525 sum 5.109 -11.100 0.686 12.239 Atomic orbital electron populations 1.70196 1.09708 1.29168 1.35514 1.27064 0.95544 1.05192 0.91246 0.84877 0.79483 0.74947 0.78403 1.16418 1.19497 1.19532 1.21450 0.95057 0.89295 1.54200 0.88509 1.19002 0.87684 0.83752 0.77761 1.90724 1.15187 1.86287 1.52137 1.44093 1.10696 1.03612 1.73140 1.19044 0.87016 0.88167 0.92458 1.21975 1.02834 0.90489 1.08646 1.21843 0.92158 0.99264 0.91354 1.21975 0.96376 0.96500 1.07558 1.21854 0.87085 0.90418 0.99402 1.98352 1.09134 1.98700 1.96623 1.66770 1.08795 1.31326 1.18324 0.91421 0.74298 0.80750 0.78545 0.81172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.40 11.83 21.85 0.26 -50.14 14 2 C 0.03 1.39 5.50 85.33 0.47 1.86 14 3 Si 1.00 40.38 29.56 68.60 2.03 42.41 14 4 H -0.24 -8.77 7.11 99.48 0.71 -8.06 14 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 14 6 H -0.27 -10.56 7.11 99.48 0.71 -9.86 14 7 C -0.56 -31.39 9.54 24.80 0.24 -31.15 14 8 H 0.10 4.68 7.85 -2.91 -0.02 4.66 14 9 C 0.51 30.12 7.70 86.31 0.66 30.78 14 10 O -0.56 -38.68 13.27 -4.42 -0.06 -38.74 14 11 N -0.67 -30.37 5.37 -312.55 -1.68 -32.05 14 12 C 0.37 15.47 7.42 133.02 0.99 16.46 14 13 C -0.22 -5.98 9.94 22.52 0.22 -5.76 14 14 C -0.02 -0.45 10.16 22.44 0.23 -0.23 14 15 C -0.20 -5.45 9.87 22.42 0.22 -5.23 14 16 C 0.18 6.99 7.27 84.68 0.62 7.60 14 17 Cl -0.06 -2.10 29.10 -2.72 -0.08 -2.18 14 18 N -0.53 -26.14 7.86 -183.99 -1.45 -27.59 14 19 H 0.28 15.42 8.29 -92.71 -0.77 14.65 14 20 H 0.42 14.91 8.68 -92.71 -0.80 14.11 14 21 H 0.18 3.34 8.06 -2.91 -0.02 3.32 14 22 H 0.20 2.06 8.06 -2.91 -0.02 2.03 14 23 H 0.17 3.31 8.06 -2.91 -0.02 3.28 14 Total: -1.00 -82.77 234.70 3.12 -79.64 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.45 Total: 14.30 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 3.65 Total: 14.34 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -2.87 Total: -109.77 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.06 Total: -38.74 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -82.77 3.12 -79.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083342436.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.911 kcal (2) G-P(sol) polarization free energy of solvation -82.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds