Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86804 * 119.99932 * 2 1 4 4 H 1.48501 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46663 * 299.99770 * 3 2 1 6 6 H 1.48501 * 109.47101 * 59.99978 * 3 2 1 7 7 C 1.40120 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.46169 * 120.00365 * 359.97438 * 7 2 1 10 10 O 1.21755 * 119.99490 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00377 * 179.97438 * 9 7 2 12 12 C 1.39604 * 119.99781 * 175.86468 * 11 9 7 13 13 C 1.38979 * 120.50993 * 34.55698 * 12 11 9 14 14 N 1.31793 * 120.65468 * 179.97438 * 13 12 11 15 15 C 1.31929 * 121.83844 * 0.02562 * 14 13 12 16 16 C 1.38225 * 120.95996 * 0.02562 * 15 14 13 17 17 C 1.38632 * 119.23992 * 359.68340 * 16 15 14 18 18 Cl 1.73597 * 120.84170 * 180.31745 * 17 16 15 19 19 H 0.97000 * 120.00048 * 0.02562 * 1 2 3 20 20 H 0.96998 * 119.99789 * 355.58739 * 11 9 7 21 21 H 1.08006 * 119.67610 * 359.97438 * 13 12 11 22 22 H 1.07999 * 119.51703 * 180.02562 * 15 14 13 23 23 H 1.08005 * 120.37956 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8816 2.3964 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2136 0.0010 9 6 1.2762 -2.4794 0.0017 10 8 0.0587 -2.4793 0.0017 11 7 1.9501 -3.6466 0.0017 12 6 1.2548 -4.8539 0.0899 13 6 0.0076 -4.9952 -0.5068 14 7 -0.6510 -6.1339 -0.4257 15 6 -0.1618 -7.1765 0.2179 16 6 1.0718 -7.1145 0.8384 17 6 1.8037 -5.9389 0.7744 18 17 3.3610 -5.8177 1.5316 19 1 -0.4850 0.8400 -0.0004 20 1 2.9179 -3.6478 -0.0637 21 1 -0.4262 -4.1636 -1.0424 22 1 -0.7336 -8.0917 0.2605 23 1 1.4630 -7.9736 1.3630 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083342437.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = -35.361810 kcal Electronic energy + Delta-G solvation = -12909.781989 eV Core-core repulsion = 10361.774827 eV Total energy + Delta-G solvation = -2548.007161 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.46010 -39.33777 -37.71520 -35.65406 -34.61851 -32.81310 -31.05217 -28.35145 -24.84662 -24.29378 -21.99490 -19.71152 -18.41683 -17.87962 -17.65946 -17.05995 -16.02328 -15.32010 -14.98122 -14.82865 -14.56917 -14.47584 -13.65746 -13.23334 -13.18397 -12.85958 -12.75209 -12.04599 -11.99801 -11.53651 -10.98825 -10.60063 -10.36105 -9.97905 -9.08495 -8.41175 -6.99312 0.04460 0.13707 0.93113 1.39107 1.40501 1.58402 2.18186 2.31736 2.65748 2.79629 3.46178 3.65532 3.75957 4.00315 4.25910 4.63639 4.76749 4.99869 5.23159 5.50461 5.66038 6.02313 6.08630 6.74016 6.98570 7.17476 8.24474 8.52004 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.039410 B = 0.008162 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.311633 B = 3429.722406 C = 4065.831836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.031 3.969 3 Si 1.001 2.999 4 H -0.246 1.246 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.094 0.906 9 C 0.529 3.471 10 O -0.602 6.602 11 N -0.681 5.681 12 C 0.122 3.878 13 C 0.075 3.925 14 N -0.484 5.484 15 C 0.068 3.932 16 C -0.127 4.127 17 C -0.052 4.052 18 Cl -0.043 7.043 19 H 0.279 0.721 20 H 0.408 0.592 21 H 0.142 0.858 22 H 0.203 0.797 23 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.923 -10.116 1.901 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.186 4.186 3 Si 0.820 3.180 4 H -0.169 1.169 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.594 4.594 8 H 0.112 0.888 9 C 0.337 3.663 10 O -0.488 6.488 11 N -0.326 5.326 12 C 0.021 3.979 13 C -0.085 4.085 14 N -0.194 5.194 15 C -0.090 4.090 16 C -0.147 4.147 17 C -0.090 4.090 18 Cl -0.014 7.014 19 H 0.089 0.911 20 H 0.244 0.756 21 H 0.159 0.841 22 H 0.220 0.780 23 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 5.256 -9.964 1.575 11.375 hybrid contribution 1.442 0.961 0.386 1.776 sum 6.699 -9.003 1.960 11.392 Atomic orbital electron populations 1.70135 1.09514 1.29515 1.34524 1.26998 0.95579 1.04959 0.91095 0.84903 0.79376 0.75040 0.78639 1.16864 1.19173 1.19347 1.21384 0.95059 0.89218 1.53730 0.88806 1.18796 0.87225 0.83492 0.76811 1.90599 1.15419 1.86746 1.56009 1.43712 1.10266 1.03101 1.75495 1.18994 0.95193 0.87388 0.96362 1.22846 0.92016 0.95295 0.98299 1.67646 1.34868 0.99874 1.16986 1.23387 0.93647 0.97690 0.94266 1.22317 0.94962 0.97011 1.00443 1.21397 0.91072 0.96388 1.00163 1.98350 1.25022 1.98298 1.79770 0.91057 0.75562 0.84053 0.78044 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.37 11.82 21.85 0.26 -47.11 14 2 C 0.03 1.63 5.50 85.33 0.47 2.10 14 3 Si 1.00 39.05 29.56 68.60 2.03 41.08 14 4 H -0.25 -8.84 7.11 99.48 0.71 -8.13 14 5 H -0.27 -10.03 7.11 99.48 0.71 -9.33 14 6 H -0.27 -10.15 7.11 99.48 0.71 -9.45 14 7 C -0.56 -30.22 9.53 24.79 0.24 -29.99 14 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 14 9 C 0.53 29.62 7.59 86.30 0.65 30.27 14 10 O -0.60 -38.43 12.45 -4.52 -0.06 -38.49 14 11 N -0.68 -30.81 5.08 -307.13 -1.56 -32.37 14 12 C 0.12 5.12 6.33 38.39 0.24 5.37 14 13 C 0.08 3.38 9.88 84.88 0.84 4.22 14 14 N -0.48 -18.54 10.35 -195.22 -2.02 -20.56 14 15 C 0.07 1.89 11.17 84.68 0.95 2.84 14 16 C -0.13 -3.26 9.93 22.36 0.22 -3.04 14 17 C -0.05 -1.71 6.39 22.67 0.14 -1.57 14 18 Cl -0.04 -1.22 28.15 -2.72 -0.08 -1.29 14 19 H 0.28 14.75 8.29 -92.71 -0.77 13.99 14 20 H 0.41 16.05 8.16 -92.71 -0.76 15.29 14 21 H 0.14 7.45 6.20 -2.91 -0.02 7.43 14 22 H 0.20 3.61 8.06 -2.91 -0.02 3.59 14 23 H 0.18 3.04 8.06 -2.91 -0.02 3.01 14 Total: -1.00 -70.46 231.67 2.84 -67.63 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.51 Total: 20.91 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 3.75 Total: 10.21 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -3.32 Total: -100.04 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.06 Total: -38.49 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.29 kcal Total: -70.46 2.84 -67.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083342437.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.264 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds