Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48500 * 109.46863 * 274.99960 * 3 2 1 5 5 H 1.48501 * 109.46842 * 34.99553 * 3 2 1 6 6 H 1.48499 * 109.47471 * 154.99723 * 3 2 1 7 7 C 1.40124 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99786 * 174.94059 * 7 2 1 9 9 C 1.46196 * 120.00081 * 354.94162 * 7 2 1 10 10 O 1.21723 * 119.99732 * 5.05919 * 9 7 2 11 11 N 1.34777 * 119.99911 * 185.05262 * 9 7 2 12 12 C 1.39090 * 119.99837 * 185.11175 * 11 9 7 13 13 C 1.39100 * 119.69620 * 174.91330 * 12 11 9 14 14 C 1.38489 * 119.07740 * 179.72110 * 13 12 11 15 15 Cl 1.73602 * 120.76465 * 180.25289 * 14 13 12 16 16 C 1.39001 * 118.47426 * 0.27066 * 14 13 12 17 17 C 1.38078 * 119.30556 * 0.02562 * 16 14 13 18 18 N 1.31919 * 120.87313 * 359.97438 * 17 16 14 19 19 H 0.96992 * 120.00143 * 0.02562 * 1 2 3 20 20 H 0.96997 * 120.00426 * 5.10746 * 11 9 7 21 21 H 1.08002 * 120.46585 * 359.97438 * 13 12 11 22 22 H 1.07994 * 120.34844 * 179.97438 * 16 14 13 23 23 H 1.08003 * 119.56212 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3822 2.1074 -1.3948 5 1 1.4946 2.6198 0.8030 6 1 3.5868 1.4120 0.5917 7 6 2.0070 -1.2135 0.0005 8 1 3.0839 -1.2153 -0.0819 9 6 1.2803 -2.4771 0.1127 10 8 0.0631 -2.4812 0.1129 11 7 1.9582 -3.6374 0.2159 12 6 1.2710 -4.8467 0.2155 13 6 1.9810 -6.0428 0.2151 14 6 1.2838 -7.2394 0.2206 15 17 2.1256 -8.7576 0.2269 16 6 -0.1055 -7.1969 0.2206 17 6 -0.7442 -5.9727 0.2145 18 7 -0.0535 -4.8488 0.2094 19 1 -0.4850 0.8400 -0.0004 20 1 2.9253 -3.6293 0.2903 21 1 3.0610 -6.0385 0.2147 22 1 -0.6795 -8.1117 0.2244 23 1 -1.8236 -5.9348 0.2141 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083342439.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = 0.519851 kcal Electronic energy + Delta-G solvation = -12731.993183 eV Core-core repulsion = 10185.541967 eV Total energy + Delta-G solvation = -2546.451216 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.89449 -37.32650 -36.42263 -33.64330 -32.47320 -31.57984 -29.52967 -26.44013 -23.34068 -22.79688 -20.06039 -17.89756 -16.94462 -15.85674 -15.63697 -15.13988 -14.33214 -14.21849 -13.81750 -13.26437 -12.73918 -12.53616 -12.00980 -11.75386 -11.35741 -11.11361 -10.91906 -10.65998 -10.34816 -9.74789 -9.12788 -8.98569 -8.91747 -7.55237 -7.44742 -6.33881 -4.82380 1.50814 1.63238 2.12527 3.06763 3.13919 3.17788 3.91225 4.16352 4.22883 4.56843 5.00575 5.28396 5.39598 5.59557 5.67495 5.92101 6.03714 6.29563 6.79787 7.27594 7.43299 7.81554 8.06137 8.54552 8.84094 9.21828 10.40528 10.57470 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.068340 B = 0.006065 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.620153 B = 4615.530086 C = 5014.115317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.085 3.915 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.529 3.471 10 O -0.508 6.508 11 N -0.668 5.668 12 C 0.406 3.594 13 C -0.236 4.236 14 C 0.041 3.959 15 Cl -0.074 7.074 16 C -0.238 4.238 17 C 0.152 3.848 18 N -0.468 5.468 19 H 0.272 0.728 20 H 0.401 0.599 21 H 0.136 0.864 22 H 0.134 0.866 23 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -10.714 0.527 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.333 3.667 10 O -0.383 6.383 11 N -0.311 5.311 12 C 0.171 3.829 13 C -0.262 4.262 14 C 0.007 3.993 15 Cl -0.045 7.045 16 C -0.261 4.261 17 C -0.010 4.010 18 N -0.183 5.183 19 H 0.083 0.917 20 H 0.235 0.765 21 H 0.154 0.846 22 H 0.152 0.848 23 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.546 -9.720 0.501 10.061 hybrid contribution 1.536 -0.265 0.032 1.559 sum 4.082 -9.985 0.533 10.801 Atomic orbital electron populations 1.69988 1.07153 1.27863 1.33636 1.25732 0.94712 1.00502 0.92619 0.86251 0.80183 0.80954 0.78815 1.19673 1.20218 1.18725 1.20838 0.94119 0.88939 1.53636 0.90963 1.18610 0.87958 0.81662 0.78481 1.90748 1.12927 1.84381 1.50289 1.44735 1.10156 1.03956 1.72235 1.18816 0.88557 0.86282 0.89216 1.21322 1.01005 0.90515 1.13394 1.20839 0.92459 0.86230 0.99801 1.98349 1.78296 1.31099 1.96771 1.21771 0.92521 1.00333 1.11492 1.22776 1.00354 0.86199 0.91624 1.68064 1.06014 1.29241 1.15021 0.91666 0.76505 0.84566 0.84837 0.82407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.04 11.84 55.55 0.66 -21.38 14 2 C 0.09 2.30 5.50 -17.35 -0.10 2.20 14 3 Si 0.91 19.35 29.56 -169.99 -5.03 14.32 14 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 14 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 14 6 H -0.26 -5.37 7.11 56.52 0.40 -4.96 14 7 C -0.54 -14.60 9.53 -35.68 -0.34 -14.94 14 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 14 9 C 0.53 14.72 7.69 -13.07 -0.10 14.62 14 10 O -0.51 -16.12 13.29 5.17 0.07 -16.05 14 11 N -0.67 -14.93 5.37 -12.78 -0.07 -15.00 14 12 C 0.41 8.58 7.42 -154.91 -1.15 7.43 14 13 C -0.24 -3.98 9.76 -39.17 -0.38 -4.36 14 14 C 0.04 0.63 6.37 -39.21 -0.25 0.38 14 15 Cl -0.07 -0.95 29.02 -51.86 -1.50 -2.45 14 16 C -0.24 -3.56 9.93 -39.36 -0.39 -3.95 14 17 C 0.15 2.67 11.17 -17.57 -0.20 2.47 14 18 N -0.47 -10.64 7.87 -12.41 -0.10 -10.73 14 19 H 0.27 7.15 8.29 -40.82 -0.34 6.81 14 20 H 0.40 7.33 8.68 -40.82 -0.35 6.98 14 21 H 0.14 1.93 8.06 -52.49 -0.42 1.51 14 22 H 0.13 1.59 8.06 -52.49 -0.42 1.17 14 23 H 0.16 2.31 8.06 -52.48 -0.42 1.89 14 LS Contribution 234.65 15.07 3.54 3.54 Total: -1.00 -33.25 234.65 -6.51 -39.76 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -1.17 Total: 4.14 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.90 Total: 3.86 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.49 Total: -47.11 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.07 Total: -16.05 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -33.25 -6.51 -39.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083342439.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.277 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds