Wall clock time and date at job start Mon Mar 30 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47622 * 2 1 4 4 C 1.50696 * 109.47622 * 120.00433 * 2 1 3 5 5 H 1.07999 * 120.00327 * 119.99546 * 4 2 1 6 6 C 1.37881 * 119.99638 * 299.99962 * 4 2 1 7 7 N 1.31514 * 119.99755 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00104 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46826 * 89.99875 * 8 6 4 10 10 H 1.48500 * 109.47118 * 210.00052 * 8 6 4 11 11 H 1.48498 * 109.46841 * 329.99726 * 8 6 4 12 12 N 1.46901 * 109.47104 * 240.00207 * 2 1 3 13 13 C 1.44304 * 111.00242 * 302.57882 * 12 2 1 14 14 C 1.53987 * 108.33034 * 221.34630 * 13 12 2 15 15 C 1.45878 * 112.65370 * 278.61969 * 14 13 12 16 16 C 1.54518 * 111.67863 * 61.49700 * 15 14 13 17 17 C 1.53003 * 109.57517 * 42.55008 * 16 15 14 18 18 C 1.53004 * 109.57103 * 162.92589 * 16 15 14 19 19 C 1.50541 * 108.85305 * 282.73511 * 16 15 14 20 20 C 1.47947 * 110.99886 * 69.99981 * 12 2 1 21 21 H 1.09002 * 109.46818 * 299.99815 * 1 2 3 22 22 H 1.08998 * 109.47734 * 59.99484 * 1 2 3 23 23 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 24 24 H 0.97003 * 119.99637 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.69460 * 101.63297 * 13 12 2 26 26 H 1.09005 * 109.68995 * 341.05584 * 13 12 2 27 27 H 1.08996 * 108.84597 * 157.80186 * 14 13 12 28 28 H 1.09004 * 108.84325 * 39.43683 * 14 13 12 29 29 H 1.09003 * 109.03515 * 182.05743 * 15 14 13 30 30 H 1.08992 * 109.04066 * 300.92849 * 15 14 13 31 31 H 1.08998 * 109.47068 * 67.22201 * 17 16 15 32 32 H 1.09006 * 109.46918 * 187.22640 * 17 16 15 33 33 H 1.09005 * 109.46807 * 307.21845 * 17 16 15 34 34 H 1.09005 * 109.46971 * 60.00028 * 18 16 15 35 35 H 1.09002 * 109.46743 * 179.97438 * 18 16 15 36 36 H 1.08999 * 109.46890 * 299.99911 * 18 16 15 37 37 H 1.09002 * 108.78982 * 212.64982 * 19 16 15 38 38 H 1.08993 * 108.78851 * 330.98618 * 19 16 15 39 39 H 1.08998 * 108.71464 * 71.18535 * 20 12 2 40 40 H 1.09000 * 108.61444 * 313.09732 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9773 1.9952 3.9071 11 1 0.8492 2.1773 1.4924 12 7 2.0196 -0.6925 -1.1995 13 6 1.5081 -2.0403 -1.2636 14 6 2.6447 -2.9679 -1.7313 15 6 2.8239 -2.9511 -3.1790 16 6 3.2032 -1.5434 -3.6909 17 6 4.2368 -0.9178 -2.7521 18 6 3.7868 -1.6510 -5.1012 19 6 1.9656 -0.6870 -3.7212 20 6 1.7509 0.1030 -2.4176 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9027 -0.5286 4.4374 25 1 0.6814 -2.0861 -1.9725 26 1 1.1639 -2.3498 -0.2767 27 1 2.4199 -3.9868 -1.4162 28 1 3.5743 -2.6520 -1.2578 29 1 3.6143 -3.6520 -3.4475 30 1 1.8953 -3.2646 -3.6558 31 1 5.1725 -1.4726 -2.8203 32 1 4.4076 0.1197 -3.0394 33 1 3.8663 -0.9547 -1.7276 34 1 3.0459 -2.0918 -5.7683 35 1 4.0533 -0.6571 -5.4608 36 1 4.6763 -2.2805 -5.0793 37 1 2.0461 0.0173 -4.5492 38 1 1.0996 -1.3273 -3.8885 39 1 2.4111 0.9703 -2.4217 40 1 0.7183 0.4505 -2.3855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083680508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:51 Heat of formation + Delta-G solvation = 5.542575 kcal Electronic energy + Delta-G solvation = -17242.953914 eV Core-core repulsion = 14864.769625 eV Total energy + Delta-G solvation = -2378.184290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65867 -36.08075 -32.56197 -32.29646 -30.20384 -27.63527 -26.82852 -25.11855 -25.06580 -22.92101 -20.84866 -18.73077 -17.80144 -16.65430 -15.63010 -15.15521 -14.84822 -14.10289 -13.91299 -13.27255 -13.04203 -12.96933 -12.60618 -12.37853 -12.14845 -11.88116 -11.55391 -11.33883 -11.20561 -10.81712 -10.73716 -10.60263 -10.29567 -10.15633 -9.94712 -9.82214 -9.80044 -9.67449 -9.44817 -8.97178 -8.56126 -7.06518 -6.04767 -4.02107 3.26684 3.37543 3.39549 4.41301 4.77530 4.99361 5.14495 5.20171 5.27274 5.56901 5.63086 5.77908 5.85034 5.88535 5.95843 6.03510 6.10926 6.17755 6.21574 6.25491 6.35036 6.36425 6.40003 6.41833 6.55113 6.59547 6.63577 6.74565 6.78947 6.84894 6.98641 7.03776 7.24699 7.43475 7.71692 8.04792 8.29673 8.69744 9.04443 9.58182 11.08283 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043034 B = 0.008479 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.498370 B = 3301.624664 C = 3517.202378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.181 3.819 3 H 0.037 0.963 4 C -0.500 4.500 5 H 0.084 0.916 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.885 3.115 9 H -0.282 1.282 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.522 5.522 13 C 0.070 3.930 14 C -0.121 4.121 15 C -0.098 4.098 16 C -0.055 4.055 17 C -0.165 4.165 18 C -0.139 4.139 19 C -0.106 4.106 20 C 0.058 3.942 21 H 0.043 0.957 22 H 0.028 0.972 23 H 0.053 0.947 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.125 0.875 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -0.756 -13.809 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.073 3.927 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.102 0.898 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.245 5.245 13 C -0.059 4.059 14 C -0.159 4.159 15 C -0.135 4.135 16 C -0.055 4.055 17 C -0.222 4.222 18 C -0.196 4.196 19 C -0.144 4.144 20 C -0.070 4.070 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.143 0.857 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.171 -0.797 -13.585 13.609 hybrid contribution -1.574 0.925 0.035 1.826 sum -1.403 0.128 -13.550 13.623 Atomic orbital electron populations 1.22836 1.01868 1.00892 0.98771 1.19812 0.88512 0.95397 0.88929 0.94481 1.20963 1.31381 1.13713 0.87733 0.89838 1.24913 0.95898 0.96501 0.95890 1.69882 1.45806 1.40320 0.97840 0.86904 0.80516 0.84089 0.76860 1.20935 1.22531 1.19397 1.60900 1.60141 1.01949 1.01557 1.21704 0.94074 0.89134 1.00983 1.20577 1.01393 0.98522 0.95402 1.20600 0.99944 0.95835 0.97167 1.20226 0.95550 0.95161 0.94527 1.22485 0.96653 0.98146 1.04873 1.21939 1.00138 1.00987 0.96526 1.21449 0.97570 0.98462 0.96883 1.22345 0.98430 0.96505 0.89701 0.93849 0.95295 0.92762 0.92710 0.96008 0.89510 0.93328 0.90350 0.93173 0.93491 0.94944 0.94337 0.85679 0.93510 0.93177 0.93096 0.92458 0.92971 0.91854 0.95649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 8.20 37.15 0.30 -3.69 16 2 C 0.18 4.17 1.88 -68.87 -0.13 4.04 16 3 H 0.04 0.90 7.14 -51.93 -0.37 0.53 16 4 C -0.50 -13.57 8.07 -34.44 -0.28 -13.85 16 5 H 0.08 2.47 7.65 -52.49 -0.40 2.07 16 6 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 8 Si 0.89 21.83 24.37 -169.99 -4.14 17.69 16 9 H -0.28 -6.83 6.87 56.52 0.39 -6.45 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.52 -10.28 1.93 -228.04 -0.44 -10.72 16 13 C 0.07 1.30 3.81 -4.70 -0.02 1.29 16 14 C -0.12 -2.01 5.17 -29.59 -0.15 -2.16 16 15 C -0.10 -1.40 4.48 -29.31 -0.13 -1.53 16 16 C -0.05 -0.77 0.77 -154.94 -0.12 -0.89 16 17 C -0.16 -2.60 6.77 37.16 0.25 -2.35 16 18 C -0.14 -1.65 8.20 37.16 0.30 -1.35 16 19 C -0.11 -1.51 4.68 -27.48 -0.13 -1.64 16 20 C 0.06 0.98 4.52 -2.77 -0.01 0.97 16 21 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 22 H 0.03 0.55 6.46 -51.93 -0.34 0.21 16 23 H 0.05 1.15 6.71 -51.93 -0.35 0.80 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.38 6.79 -51.93 -0.35 0.03 16 26 H 0.09 1.86 5.78 -51.93 -0.30 1.56 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.44 6.23 -51.93 -0.32 1.12 16 29 H 0.05 0.67 8.02 -51.93 -0.42 0.25 16 30 H 0.05 0.64 7.59 -51.93 -0.39 0.25 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.59 7.82 -51.93 -0.41 0.18 16 33 H 0.13 2.34 3.75 -51.93 -0.19 2.14 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.73 7.70 -51.93 -0.40 0.33 16 38 H 0.05 0.74 6.65 -51.93 -0.35 0.39 16 39 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 40 H 0.03 0.43 6.18 -51.93 -0.32 0.11 16 LS Contribution 277.15 15.07 4.18 4.18 Total: -1.00 -27.96 277.15 -6.61 -34.57 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.77 Total: -0.03 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -0.21 Total: -19.30 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.33 Total: -37.10 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.96 -6.61 -34.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083680508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.109 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds