Wall clock time and date at job start Mon Mar 30 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47622 * 2 1 4 4 C 1.50696 * 109.47622 * 120.00433 * 2 1 3 5 5 H 1.07999 * 120.00327 * 119.99546 * 4 2 1 6 6 C 1.37881 * 119.99638 * 299.99962 * 4 2 1 7 7 N 1.31514 * 119.99755 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00104 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46826 * 89.99875 * 8 6 4 10 10 H 1.48500 * 109.47118 * 210.00052 * 8 6 4 11 11 H 1.48498 * 109.46841 * 329.99726 * 8 6 4 12 12 N 1.46901 * 109.47104 * 240.00207 * 2 1 3 13 13 C 1.44304 * 111.00242 * 302.57882 * 12 2 1 14 14 C 1.53987 * 108.33034 * 221.34630 * 13 12 2 15 15 C 1.45878 * 112.65370 * 278.61969 * 14 13 12 16 16 C 1.54518 * 111.67863 * 61.49700 * 15 14 13 17 17 C 1.53003 * 109.57517 * 42.55008 * 16 15 14 18 18 C 1.53004 * 109.57103 * 162.92589 * 16 15 14 19 19 C 1.50541 * 108.85305 * 282.73511 * 16 15 14 20 20 C 1.47947 * 110.99886 * 69.99981 * 12 2 1 21 21 H 1.09002 * 109.46818 * 299.99815 * 1 2 3 22 22 H 1.08998 * 109.47734 * 59.99484 * 1 2 3 23 23 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 24 24 H 0.97003 * 119.99637 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.69460 * 101.63297 * 13 12 2 26 26 H 1.09005 * 109.68995 * 341.05584 * 13 12 2 27 27 H 1.08996 * 108.84597 * 157.80186 * 14 13 12 28 28 H 1.09004 * 108.84325 * 39.43683 * 14 13 12 29 29 H 1.09003 * 109.03515 * 182.05743 * 15 14 13 30 30 H 1.08992 * 109.04066 * 300.92849 * 15 14 13 31 31 H 1.08998 * 109.47068 * 67.22201 * 17 16 15 32 32 H 1.09006 * 109.46918 * 187.22640 * 17 16 15 33 33 H 1.09005 * 109.46807 * 307.21845 * 17 16 15 34 34 H 1.09005 * 109.46971 * 60.00028 * 18 16 15 35 35 H 1.09002 * 109.46743 * 179.97438 * 18 16 15 36 36 H 1.08999 * 109.46890 * 299.99911 * 18 16 15 37 37 H 1.09002 * 108.78982 * 212.64982 * 19 16 15 38 38 H 1.08993 * 108.78851 * 330.98618 * 19 16 15 39 39 H 1.08998 * 108.71464 * 71.18535 * 20 12 2 40 40 H 1.09000 * 108.61444 * 313.09732 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9773 1.9952 3.9071 11 1 0.8492 2.1773 1.4924 12 7 2.0196 -0.6925 -1.1995 13 6 1.5081 -2.0403 -1.2636 14 6 2.6447 -2.9679 -1.7313 15 6 2.8239 -2.9511 -3.1790 16 6 3.2032 -1.5434 -3.6909 17 6 4.2368 -0.9178 -2.7521 18 6 3.7868 -1.6510 -5.1012 19 6 1.9656 -0.6870 -3.7212 20 6 1.7509 0.1030 -2.4176 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9027 -0.5286 4.4374 25 1 0.6814 -2.0861 -1.9725 26 1 1.1639 -2.3498 -0.2767 27 1 2.4199 -3.9868 -1.4162 28 1 3.5743 -2.6520 -1.2578 29 1 3.6143 -3.6520 -3.4475 30 1 1.8953 -3.2646 -3.6558 31 1 5.1725 -1.4726 -2.8203 32 1 4.4076 0.1197 -3.0394 33 1 3.8663 -0.9547 -1.7276 34 1 3.0459 -2.0918 -5.7683 35 1 4.0533 -0.6571 -5.4608 36 1 4.6763 -2.2805 -5.0793 37 1 2.0461 0.0173 -4.5492 38 1 1.0996 -1.3273 -3.8885 39 1 2.4111 0.9703 -2.4217 40 1 0.7183 0.4505 -2.3855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083680508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:51 Heat of formation + Delta-G solvation = -10.450225 kcal Electronic energy + Delta-G solvation = -17243.647414 eV Core-core repulsion = 14864.769625 eV Total energy + Delta-G solvation = -2378.877789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00644 -37.60767 -34.52911 -33.64642 -31.88561 -28.96249 -27.98953 -27.12262 -26.47823 -24.19318 -22.53891 -20.28800 -19.01639 -18.62229 -17.32881 -16.64084 -16.30434 -15.54192 -15.41457 -14.82962 -14.67628 -14.35962 -14.05202 -13.92012 -13.64251 -13.24885 -12.92583 -12.84561 -12.64025 -12.53078 -12.11321 -12.00628 -11.92635 -11.62559 -11.50543 -11.31265 -11.13694 -11.07664 -10.89210 -10.86864 -10.71358 -8.59208 -8.24468 -6.25303 1.29863 1.35967 1.45478 2.33785 3.10049 3.28266 3.83553 3.97934 4.10181 4.27869 4.35628 4.48278 4.52453 4.56026 4.59972 4.70851 4.75682 4.85310 4.89686 4.95205 4.99412 5.03087 5.11862 5.13897 5.19067 5.25893 5.31525 5.39545 5.44327 5.50570 5.63431 5.65215 5.70032 5.70523 6.08595 6.19187 6.64499 6.80207 6.87264 7.39166 8.92334 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043034 B = 0.008479 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.498370 B = 3301.624664 C = 3517.202378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.184 3.816 3 H 0.029 0.971 4 C -0.494 4.494 5 H 0.042 0.958 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.947 3.053 9 H -0.272 1.272 10 H -0.301 1.301 11 H -0.250 1.250 12 N -0.530 5.530 13 C 0.075 3.925 14 C -0.113 4.113 15 C -0.096 4.096 16 C -0.054 4.054 17 C -0.161 4.161 18 C -0.133 4.133 19 C -0.101 4.101 20 C 0.056 3.944 21 H 0.033 0.967 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.263 0.737 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 0.095 -16.645 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.076 3.924 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.229 1.229 11 H -0.175 1.175 12 N -0.253 5.253 13 C -0.053 4.053 14 C -0.151 4.151 15 C -0.133 4.133 16 C -0.054 4.054 17 C -0.219 4.219 18 C -0.190 4.190 19 C -0.139 4.139 20 C -0.071 4.071 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.857 0.053 -16.456 16.479 hybrid contribution -1.166 0.582 0.904 1.586 sum -2.023 0.635 -15.552 15.696 Atomic orbital electron populations 1.22706 1.00242 1.01130 0.99688 1.19586 0.89620 0.94447 0.88744 0.95263 1.21187 1.29950 1.12329 0.89781 0.93948 1.25720 0.97552 0.99732 0.95534 1.70037 1.48071 1.42529 0.98454 0.85890 0.78989 0.80492 0.77119 1.19819 1.22876 1.17462 1.60857 1.60394 1.02312 1.01744 1.21608 0.95294 0.89023 0.99405 1.20498 0.99340 0.98028 0.97277 1.20570 1.01141 0.96584 0.95022 1.20237 0.95039 0.94598 0.95548 1.22373 0.97327 0.98600 1.03555 1.21866 1.00549 1.01731 0.94839 1.21439 0.97817 0.98818 0.95791 1.22444 0.98559 0.96553 0.89546 0.94808 0.92305 0.92961 0.92754 0.94303 0.93204 0.92942 0.92837 0.91957 0.92021 0.94775 0.94143 0.88820 0.92020 0.92457 0.92778 0.90168 0.92251 0.92011 0.95258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.42 8.20 71.98 0.59 -6.83 16 2 C 0.18 8.45 1.88 44.17 0.08 8.53 16 3 H 0.03 1.40 7.14 -2.39 -0.02 1.38 16 4 C -0.49 -27.76 8.07 25.60 0.21 -27.56 16 5 H 0.04 2.67 7.65 -2.91 -0.02 2.64 16 6 C 0.01 0.66 5.45 84.66 0.46 1.12 16 7 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 8 Si 0.95 45.18 24.37 68.60 1.67 46.85 16 9 H -0.27 -12.43 6.87 99.48 0.68 -11.75 16 10 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 12 N -0.53 -20.61 1.93 -875.39 -1.69 -22.30 16 13 C 0.08 2.80 3.81 87.12 0.33 3.13 16 14 C -0.11 -3.74 5.17 28.74 0.15 -3.59 16 15 C -0.10 -2.50 4.48 28.93 0.13 -2.38 16 16 C -0.05 -1.37 0.77 -52.46 -0.04 -1.41 16 17 C -0.16 -4.90 6.77 71.98 0.49 -4.41 16 18 C -0.13 -2.63 8.20 71.98 0.59 -2.04 16 19 C -0.10 -2.52 4.68 30.11 0.14 -2.38 16 20 C 0.06 1.76 4.52 86.41 0.39 2.15 16 21 H 0.03 1.46 3.27 -2.39 -0.01 1.45 16 22 H 0.06 2.07 6.46 -2.39 -0.02 2.06 16 23 H 0.05 2.16 6.71 -2.39 -0.02 2.14 16 24 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.04 1.29 6.79 -2.39 -0.02 1.28 16 26 H 0.05 2.20 5.78 -2.38 -0.01 2.19 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 2.03 6.23 -2.38 -0.01 2.01 16 29 H 0.06 1.50 8.02 -2.39 -0.02 1.48 16 30 H 0.06 1.46 7.59 -2.39 -0.02 1.45 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.04 1.17 7.82 -2.38 -0.02 1.16 16 33 H 0.09 3.52 3.75 -2.38 -0.01 3.52 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 35 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.68 7.70 -2.39 -0.02 1.67 16 38 H 0.06 1.43 6.65 -2.39 -0.02 1.41 16 39 H 0.06 1.95 7.69 -2.39 -0.02 1.93 16 40 H 0.03 0.90 6.18 -2.39 -0.01 0.89 16 Total: -1.00 -61.79 277.15 4.72 -57.07 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.92 Total: 13.22 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 3.52 Total: -35.67 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.39 Total: -81.47 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Total: -61.79 4.72 -57.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083680508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.623 kcal (2) G-P(sol) polarization free energy of solvation -61.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds