Wall clock time and date at job start Mon Mar 30 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46850 * 2 1 4 4 C 1.50703 * 109.47079 * 240.00329 * 2 1 3 5 5 H 1.08005 * 119.99611 * 239.99722 * 4 2 1 6 6 C 1.37867 * 120.00305 * 59.71977 * 4 2 1 7 7 N 1.31519 * 120.00047 * 0.27850 * 6 4 2 8 8 Si 1.86799 * 120.00084 * 180.27580 * 6 4 2 9 9 H 1.48503 * 109.47201 * 90.00171 * 8 6 4 10 10 H 1.48501 * 109.47368 * 210.00199 * 8 6 4 11 11 H 1.48505 * 109.47082 * 330.00239 * 8 6 4 12 12 N 1.46898 * 109.47411 * 119.99743 * 2 1 3 13 13 C 1.39781 * 111.00076 * 289.35504 * 12 2 1 14 14 C 1.54429 * 111.76995 * 189.12427 * 13 12 2 15 15 C 1.50750 * 109.02886 * 282.59300 * 14 13 12 16 16 C 1.54159 * 112.61361 * 93.01477 * 15 14 13 17 17 C 1.53001 * 108.98203 * 79.13113 * 16 15 14 18 18 C 1.53001 * 108.98551 * 197.84890 * 16 15 14 19 19 C 1.53824 * 111.97214 * 318.49188 * 16 15 14 20 20 C 1.47634 * 110.99948 * 58.24501 * 12 2 1 21 21 H 1.08993 * 109.47290 * 54.02924 * 1 2 3 22 22 H 1.08999 * 109.46849 * 174.03035 * 1 2 3 23 23 H 1.08996 * 109.47248 * 294.02630 * 1 2 3 24 24 H 0.96999 * 119.99934 * 180.02562 * 7 6 4 25 25 H 1.09000 * 109.01928 * 309.71198 * 13 12 2 26 26 H 1.08996 * 109.02070 * 68.60969 * 13 12 2 27 27 H 1.09002 * 109.54250 * 42.45426 * 14 13 12 28 28 H 1.08995 * 109.54743 * 162.72105 * 14 13 12 29 29 H 1.09000 * 108.85309 * 213.82791 * 15 14 13 30 30 H 1.09003 * 108.84976 * 332.20571 * 15 14 13 31 31 H 1.09002 * 109.47186 * 60.00066 * 17 16 15 32 32 H 1.09000 * 109.47248 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.47240 * 300.00109 * 17 16 15 34 34 H 1.08997 * 109.46991 * 59.99580 * 18 16 15 35 35 H 1.08998 * 109.47721 * 180.02562 * 18 16 15 36 36 H 1.09005 * 109.47013 * 300.00207 * 18 16 15 37 37 H 1.09000 * 109.05019 * 79.59087 * 19 16 15 38 38 H 1.08999 * 109.04881 * 198.56211 * 19 16 15 39 39 H 1.09000 * 109.74292 * 269.99021 * 20 12 2 40 40 H 1.09003 * 109.74794 * 30.70571 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6945 -0.2427 -2.4827 7 7 0.9384 0.8266 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1702 -4.4054 10 1 2.4720 -0.1518 -5.1155 11 1 3.6200 -1.7650 -3.7153 12 7 2.0197 -0.6924 1.1994 13 6 1.7790 0.0657 2.3489 14 6 2.4819 -0.5324 3.5870 15 6 1.6916 -1.7197 4.0753 16 6 2.1910 -3.0503 3.4783 17 6 3.4438 -3.4962 4.2351 18 6 1.1035 -4.1126 3.6509 19 6 2.5297 -2.9194 1.9835 20 6 1.5122 -2.0777 1.2549 21 1 -0.3633 0.6036 -0.8316 22 1 -0.3633 -1.0221 -0.1069 23 1 -0.3633 0.4184 0.9386 24 1 0.7004 1.1554 -3.4844 25 1 2.1443 1.0800 2.1884 26 1 0.7053 0.1000 2.5333 27 1 3.4886 -0.8509 3.3164 28 1 2.5352 0.2191 4.3747 29 1 1.7671 -1.7705 5.1615 30 1 0.6451 -1.5822 3.8030 31 1 3.2019 -3.6339 5.2890 32 1 3.8037 -4.4374 3.8194 33 1 4.2180 -2.7354 4.1364 34 1 0.1989 -3.7939 3.1332 35 1 1.4487 -5.0576 3.2316 36 1 0.8882 -4.2432 4.7115 37 1 3.5121 -2.4586 1.8804 38 1 2.5542 -3.9129 1.5359 39 1 0.5633 -2.1010 1.7907 40 1 1.3742 -2.4601 0.2435 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083680510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:53 Heat of formation + Delta-G solvation = -14.606844 kcal Electronic energy + Delta-G solvation = -16980.561205 eV Core-core repulsion = 14601.503171 eV Total energy + Delta-G solvation = -2379.058034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.36358 -36.14228 -33.01833 -31.67304 -29.61092 -27.57920 -27.10055 -25.24211 -24.52580 -22.48605 -21.11535 -19.05766 -17.85537 -16.09362 -15.53025 -15.10237 -14.53670 -14.14306 -13.81473 -13.49857 -12.84028 -12.64006 -12.45166 -12.21102 -11.75016 -11.70839 -11.56661 -11.28995 -11.18255 -10.97251 -10.73052 -10.49760 -10.43690 -10.26423 -10.10085 -10.04079 -9.81767 -9.58517 -9.41497 -8.81021 -8.34305 -6.91809 -5.96449 -3.98960 3.33168 3.39915 3.44149 4.45697 4.88556 5.06405 5.08784 5.27954 5.35470 5.51396 5.62057 5.67480 5.80068 5.88060 5.96717 5.98237 6.11549 6.19027 6.24088 6.25571 6.30873 6.39088 6.48792 6.54150 6.65025 6.74111 6.78879 6.79939 6.91418 6.98098 7.07034 7.24040 7.64120 7.79055 7.94763 8.31492 8.48271 8.87534 9.07792 9.65877 11.11117 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036457 B = 0.007928 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.844924 B = 3531.021730 C = 3883.524231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.215 3.785 3 H 0.036 0.964 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.550 5.550 13 C 0.081 3.919 14 C -0.119 4.119 15 C -0.104 4.104 16 C -0.065 4.065 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.105 4.105 20 C 0.076 3.924 21 H 0.083 0.917 22 H 0.029 0.971 23 H 0.006 0.994 24 H 0.259 0.741 25 H 0.058 0.942 26 H 0.007 0.993 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.023 0.977 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -6.151 11.552 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.110 3.890 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.274 5.274 13 C -0.050 4.050 14 C -0.157 4.157 15 C -0.141 4.141 16 C -0.065 4.065 17 C -0.195 4.195 18 C -0.198 4.198 19 C -0.143 4.143 20 C -0.052 4.052 21 H 0.101 0.899 22 H 0.048 0.952 23 H 0.025 0.975 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.660 -6.065 11.393 13.013 hybrid contribution -0.670 -0.319 -0.780 1.076 sum 0.990 -6.383 10.613 12.424 Atomic orbital electron populations 1.22362 1.00899 1.00085 0.99179 1.19270 0.89554 0.94224 0.85980 0.94635 1.21147 1.30247 1.12421 0.89708 0.91925 1.24931 0.95320 0.95147 0.98958 1.69907 1.37223 1.23158 1.23261 0.86562 0.79225 0.79308 0.82696 1.20905 1.21372 1.19862 1.59067 1.62806 1.02274 1.03230 1.20834 0.96320 0.96976 0.90828 1.21525 1.00522 0.96578 0.97049 1.21435 0.99871 0.94119 0.98712 1.20991 0.94807 0.94544 0.96138 1.21912 0.97688 1.00841 0.99097 1.21935 0.98827 0.98351 1.00640 1.21548 1.01194 0.99193 0.92345 1.21614 0.94142 0.89070 1.00341 0.89877 0.95225 0.97546 0.93122 0.92368 0.97493 0.90990 0.92707 0.93262 0.92589 0.93478 0.93133 0.92638 0.92719 0.92973 0.93487 0.90819 0.93016 0.95918 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.38 37.16 0.31 -3.76 16 2 C 0.22 5.44 2.27 -68.86 -0.16 5.29 16 3 H 0.04 0.99 7.82 -51.93 -0.41 0.59 16 4 C -0.50 -13.56 7.54 -34.44 -0.26 -13.82 16 5 H 0.06 1.72 7.18 -52.48 -0.38 1.34 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.70 11.38 55.43 0.63 -25.07 16 8 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.55 -11.79 3.88 -233.38 -0.91 -12.69 16 13 C 0.08 1.53 4.62 -6.74 -0.03 1.49 16 14 C -0.12 -1.82 5.60 -27.11 -0.15 -1.98 16 15 C -0.10 -1.47 4.10 -27.25 -0.11 -1.58 16 16 C -0.06 -0.89 0.51 -153.47 -0.08 -0.97 16 17 C -0.14 -1.67 8.13 37.16 0.30 -1.36 16 18 C -0.14 -1.76 8.14 37.16 0.30 -1.46 16 19 C -0.10 -1.72 4.20 -27.40 -0.12 -1.84 16 20 C 0.08 1.48 3.70 -4.52 -0.02 1.46 16 21 H 0.08 2.24 6.24 -51.93 -0.32 1.91 16 22 H 0.03 0.71 7.27 -51.93 -0.38 0.33 16 23 H 0.01 0.13 6.62 -51.93 -0.34 -0.22 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.06 1.13 7.79 -51.93 -0.40 0.72 16 26 H 0.01 0.14 6.14 -51.93 -0.32 -0.18 16 27 H 0.07 1.15 6.33 -51.93 -0.33 0.82 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.62 7.97 -51.93 -0.41 0.20 16 30 H 0.06 0.85 6.39 -51.93 -0.33 0.52 16 31 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16 34 H 0.05 0.73 7.41 -51.93 -0.38 0.34 16 35 H 0.05 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.31 7.10 -51.93 -0.37 0.94 16 38 H 0.05 0.81 7.92 -51.93 -0.41 0.39 16 39 H 0.02 0.44 5.92 -51.93 -0.31 0.13 16 40 H 0.08 1.84 6.19 -51.93 -0.32 1.52 16 LS Contribution 289.21 15.07 4.36 4.36 Total: -1.00 -27.54 289.21 -8.08 -35.63 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -7.05 Total: -1.61 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -0.10 Total: -17.05 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.28 Total: -37.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.54 -8.08 -35.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083680510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.021 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds