Wall clock time and date at job start Mon Mar 30 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46850 * 2 1 4 4 C 1.50703 * 109.47079 * 240.00329 * 2 1 3 5 5 H 1.08005 * 119.99611 * 239.99722 * 4 2 1 6 6 C 1.37867 * 120.00305 * 59.71977 * 4 2 1 7 7 N 1.31519 * 120.00047 * 0.27850 * 6 4 2 8 8 Si 1.86799 * 120.00084 * 180.27580 * 6 4 2 9 9 H 1.48503 * 109.47201 * 90.00171 * 8 6 4 10 10 H 1.48501 * 109.47368 * 210.00199 * 8 6 4 11 11 H 1.48505 * 109.47082 * 330.00239 * 8 6 4 12 12 N 1.46898 * 109.47411 * 119.99743 * 2 1 3 13 13 C 1.39781 * 111.00076 * 289.35504 * 12 2 1 14 14 C 1.54429 * 111.76995 * 189.12427 * 13 12 2 15 15 C 1.50750 * 109.02886 * 282.59300 * 14 13 12 16 16 C 1.54159 * 112.61361 * 93.01477 * 15 14 13 17 17 C 1.53001 * 108.98203 * 79.13113 * 16 15 14 18 18 C 1.53001 * 108.98551 * 197.84890 * 16 15 14 19 19 C 1.53824 * 111.97214 * 318.49188 * 16 15 14 20 20 C 1.47634 * 110.99948 * 58.24501 * 12 2 1 21 21 H 1.08993 * 109.47290 * 54.02924 * 1 2 3 22 22 H 1.08999 * 109.46849 * 174.03035 * 1 2 3 23 23 H 1.08996 * 109.47248 * 294.02630 * 1 2 3 24 24 H 0.96999 * 119.99934 * 180.02562 * 7 6 4 25 25 H 1.09000 * 109.01928 * 309.71198 * 13 12 2 26 26 H 1.08996 * 109.02070 * 68.60969 * 13 12 2 27 27 H 1.09002 * 109.54250 * 42.45426 * 14 13 12 28 28 H 1.08995 * 109.54743 * 162.72105 * 14 13 12 29 29 H 1.09000 * 108.85309 * 213.82791 * 15 14 13 30 30 H 1.09003 * 108.84976 * 332.20571 * 15 14 13 31 31 H 1.09002 * 109.47186 * 60.00066 * 17 16 15 32 32 H 1.09000 * 109.47248 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.47240 * 300.00109 * 17 16 15 34 34 H 1.08997 * 109.46991 * 59.99580 * 18 16 15 35 35 H 1.08998 * 109.47721 * 180.02562 * 18 16 15 36 36 H 1.09005 * 109.47013 * 300.00207 * 18 16 15 37 37 H 1.09000 * 109.05019 * 79.59087 * 19 16 15 38 38 H 1.08999 * 109.04881 * 198.56211 * 19 16 15 39 39 H 1.09000 * 109.74292 * 269.99021 * 20 12 2 40 40 H 1.09003 * 109.74794 * 30.70571 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6945 -0.2427 -2.4827 7 7 0.9384 0.8266 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1702 -4.4054 10 1 2.4720 -0.1518 -5.1155 11 1 3.6200 -1.7650 -3.7153 12 7 2.0197 -0.6924 1.1994 13 6 1.7790 0.0657 2.3489 14 6 2.4819 -0.5324 3.5870 15 6 1.6916 -1.7197 4.0753 16 6 2.1910 -3.0503 3.4783 17 6 3.4438 -3.4962 4.2351 18 6 1.1035 -4.1126 3.6509 19 6 2.5297 -2.9194 1.9835 20 6 1.5122 -2.0777 1.2549 21 1 -0.3633 0.6036 -0.8316 22 1 -0.3633 -1.0221 -0.1069 23 1 -0.3633 0.4184 0.9386 24 1 0.7004 1.1554 -3.4844 25 1 2.1443 1.0800 2.1884 26 1 0.7053 0.1000 2.5333 27 1 3.4886 -0.8509 3.3164 28 1 2.5352 0.2191 4.3747 29 1 1.7671 -1.7705 5.1615 30 1 0.6451 -1.5822 3.8030 31 1 3.2019 -3.6339 5.2890 32 1 3.8037 -4.4374 3.8194 33 1 4.2180 -2.7354 4.1364 34 1 0.1989 -3.7939 3.1332 35 1 1.4487 -5.0576 3.2316 36 1 0.8882 -4.2432 4.7115 37 1 3.5121 -2.4586 1.8804 38 1 2.5542 -3.9129 1.5359 39 1 0.5633 -2.1010 1.7907 40 1 1.3742 -2.4601 0.2435 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083680510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:53 Heat of formation + Delta-G solvation = -29.815717 kcal Electronic energy + Delta-G solvation = -16981.220712 eV Core-core repulsion = 14601.503171 eV Total energy + Delta-G solvation = -2379.717540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80774 -37.65481 -34.89046 -33.19478 -31.31495 -29.12064 -28.06203 -27.30959 -26.02505 -23.90256 -22.76647 -20.74463 -19.08046 -18.15247 -17.23547 -16.44453 -16.25206 -15.69574 -15.23306 -14.90335 -14.49103 -14.02773 -13.91713 -13.64227 -13.24407 -13.15300 -12.90296 -12.86270 -12.61616 -12.55701 -12.33972 -12.23669 -12.13849 -12.02378 -11.84010 -11.27538 -11.09418 -11.00329 -10.91014 -10.83381 -10.48151 -8.66539 -8.09410 -6.19175 1.42100 1.43041 1.53846 2.43987 3.19689 3.42785 3.87032 3.93721 4.03699 4.26977 4.31209 4.46916 4.58351 4.71014 4.78080 4.81944 4.82840 4.85925 4.91272 4.97808 4.99319 5.07089 5.09642 5.17748 5.23271 5.27171 5.29104 5.37168 5.50637 5.54816 5.56674 5.60914 5.73895 5.76903 5.83946 6.28034 6.58182 6.95696 7.10223 7.50068 8.97324 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036457 B = 0.007928 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.844924 B = 3531.021730 C = 3883.524231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.218 3.782 3 H 0.001 0.999 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.554 5.554 13 C 0.076 3.924 14 C -0.108 4.108 15 C -0.103 4.103 16 C -0.063 4.063 17 C -0.134 4.134 18 C -0.138 4.138 19 C -0.099 4.099 20 C 0.082 3.918 21 H 0.057 0.943 22 H 0.027 0.973 23 H 0.021 0.979 24 H 0.260 0.740 25 H 0.046 0.954 26 H 0.001 0.999 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -7.664 13.025 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.112 3.888 3 H 0.019 0.981 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.278 5.278 13 C -0.054 4.054 14 C -0.146 4.146 15 C -0.140 4.140 16 C -0.063 4.063 17 C -0.191 4.191 18 C -0.195 4.195 19 C -0.137 4.137 20 C -0.044 4.044 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.019 0.981 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.212 -7.589 12.886 15.117 hybrid contribution -0.855 0.189 -1.216 1.498 sum 1.358 -7.399 11.670 13.884 Atomic orbital electron populations 1.22141 1.00521 0.99382 0.98845 1.19049 0.89725 0.92607 0.87459 0.98088 1.21377 1.30236 1.12322 0.90832 0.92485 1.25704 0.95492 0.95841 1.01860 1.70036 1.38113 1.24344 1.23902 0.85559 0.78847 0.78240 0.79006 1.20206 1.21038 1.19337 1.59050 1.62850 1.03027 1.02853 1.20950 0.96432 0.96546 0.91453 1.21450 0.99815 0.97672 0.95629 1.21430 0.98710 0.93573 1.00289 1.20968 0.96311 0.94998 0.94024 1.21861 0.96398 1.00906 0.99918 1.21906 0.97693 0.98066 1.01821 1.21465 0.99187 0.98580 0.94450 1.21555 0.95412 0.88265 0.99209 0.92423 0.95421 0.96010 0.93080 0.93585 0.98086 0.91430 0.90387 0.90628 0.93846 0.91592 0.92546 0.93075 0.94008 0.92238 0.91593 0.92199 0.92179 0.95650 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.53 8.38 71.98 0.60 -6.93 16 2 C 0.22 11.39 2.27 44.17 0.10 11.49 16 3 H 0.00 0.07 7.82 -2.38 -0.02 0.05 16 4 C -0.51 -28.45 7.54 25.60 0.19 -28.25 16 5 H 0.06 3.18 7.18 -2.91 -0.02 3.16 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.13 11.38 21.44 0.24 -53.89 16 8 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.55 -24.09 3.88 -892.28 -3.47 -27.55 16 13 C 0.08 2.87 4.62 88.07 0.41 3.28 16 14 C -0.11 -3.10 5.60 30.35 0.17 -2.93 16 15 C -0.10 -2.62 4.10 30.26 0.12 -2.49 16 16 C -0.06 -1.57 0.51 -51.51 -0.03 -1.59 16 17 C -0.13 -2.76 8.13 71.98 0.59 -2.17 16 18 C -0.14 -3.05 8.14 71.98 0.59 -2.47 16 19 C -0.10 -3.14 4.20 30.16 0.13 -3.01 16 20 C 0.08 3.23 3.70 85.45 0.32 3.55 16 21 H 0.06 3.20 6.24 -2.39 -0.01 3.18 16 22 H 0.03 1.35 7.27 -2.39 -0.02 1.33 16 23 H 0.02 0.98 6.62 -2.39 -0.02 0.96 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.05 1.81 7.79 -2.39 -0.02 1.79 16 26 H 0.00 0.05 6.14 -2.39 -0.01 0.04 16 27 H 0.07 2.03 6.33 -2.39 -0.02 2.02 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.58 7.97 -2.39 -0.02 1.56 16 30 H 0.04 1.23 6.39 -2.39 -0.02 1.21 16 31 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.10 7.38 -2.39 -0.02 1.09 16 34 H 0.04 1.02 7.41 -2.39 -0.02 1.01 16 35 H 0.06 1.23 8.07 -2.39 -0.02 1.21 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 37 H 0.06 2.07 7.10 -2.39 -0.02 2.05 16 38 H 0.06 1.79 7.92 -2.39 -0.02 1.77 16 39 H 0.03 0.97 5.92 -2.39 -0.01 0.96 16 40 H 0.05 2.45 6.19 -2.39 -0.01 2.43 16 Total: -1.00 -59.64 289.21 3.42 -56.22 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.98 Total: 9.42 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 3.63 Total: -30.57 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -3.22 Total: -81.44 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -59.64 3.42 -56.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083680510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.400 kcal (2) G-P(sol) polarization free energy of solvation -59.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds