Wall clock time and date at job start Mon Mar 30 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46573 * 2 1 4 4 C 1.50701 * 109.47136 * 120.00005 * 2 1 3 5 5 H 1.07991 * 119.99622 * 120.00318 * 4 2 1 6 6 C 1.37879 * 119.99820 * 299.72659 * 4 2 1 7 7 N 1.31512 * 120.00053 * 0.27458 * 6 4 2 8 8 Si 1.86796 * 119.99723 * 180.27803 * 6 4 2 9 9 H 1.48504 * 109.47396 * 90.00070 * 8 6 4 10 10 H 1.48504 * 109.47232 * 209.99615 * 8 6 4 11 11 H 1.48500 * 109.47289 * 329.99737 * 8 6 4 12 12 N 1.46901 * 109.47135 * 240.00099 * 2 1 3 13 13 C 1.46898 * 110.99720 * 101.75161 * 12 2 1 14 14 H 1.08992 * 109.47579 * 23.96360 * 13 12 2 15 15 C 1.53002 * 109.47120 * 263.95921 * 13 12 2 16 16 C 1.53001 * 109.46834 * 180.02562 * 15 13 12 17 17 C 1.52989 * 109.47373 * 60.00321 * 16 15 13 18 18 C 1.53002 * 109.46879 * 299.99652 * 17 16 15 19 19 C 1.52994 * 109.47267 * 60.00431 * 18 17 16 20 20 C 1.52995 * 109.47499 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.47451 * 59.99474 * 19 18 17 22 22 H 1.08997 * 109.47393 * 65.95261 * 1 2 3 23 23 H 1.09003 * 109.46796 * 185.95441 * 1 2 3 24 24 H 1.09001 * 109.47102 * 305.94894 * 1 2 3 25 25 H 0.97000 * 120.00137 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99658 * 225.70843 * 12 2 1 27 27 H 1.09000 * 109.47042 * 300.00036 * 15 13 12 28 28 H 1.08996 * 109.47081 * 60.00304 * 15 13 12 29 29 H 1.09001 * 109.46877 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.46907 * 299.99593 * 16 15 13 31 31 H 1.09000 * 109.47698 * 59.99757 * 17 16 15 32 32 H 1.09000 * 109.47371 * 180.02562 * 17 16 15 33 33 H 1.09010 * 109.46890 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47518 * 299.99685 * 18 17 16 35 35 H 1.09001 * 109.47529 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.47221 * 299.99586 * 20 19 18 37 37 H 1.09002 * 109.47507 * 59.99742 * 20 19 18 38 38 H 1.09000 * 109.47258 * 300.00826 * 21 19 18 39 39 H 1.09003 * 109.46709 * 59.99877 * 21 19 18 40 40 H 1.08997 * 109.47193 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.7039 -0.2360 2.4827 7 7 0.9478 0.8332 2.6034 8 14 2.3330 -1.1121 4.0079 9 1 3.6425 -0.5354 4.4054 10 1 1.3592 -0.9387 5.1155 11 1 2.4976 -2.5587 3.7154 12 7 2.0197 -0.6925 -1.1995 13 6 2.4585 0.2688 -2.2199 14 1 2.7247 1.2110 -1.7411 15 6 1.3236 0.5067 -3.2180 16 6 1.7809 1.5074 -4.2812 17 6 2.9990 0.9475 -5.0182 18 6 4.1340 0.7095 -4.0201 19 6 3.6768 -0.2912 -2.9570 20 6 4.8119 -0.5296 -1.9593 21 6 3.3028 -1.6139 -3.6289 22 1 -0.3634 0.4187 -0.9384 23 1 -0.3633 -1.0222 0.1066 24 1 -0.3633 0.6033 0.8319 25 1 0.7171 1.1672 3.4844 26 1 2.7604 -1.3372 -0.9676 27 1 1.0575 -0.4356 -3.6970 28 1 0.4555 0.9052 -2.6929 29 1 0.9721 1.6772 -4.9920 30 1 2.0472 2.4497 -3.8025 31 1 2.7327 0.0051 -5.4969 32 1 3.3251 1.6606 -5.7754 33 1 5.0021 0.3110 -4.5454 34 1 4.4005 1.6519 -3.5415 35 1 4.4864 -1.2429 -1.2021 36 1 5.6796 -0.9288 -2.4846 37 1 5.0788 0.4126 -1.4805 38 1 2.4943 -1.4444 -4.3400 39 1 4.1707 -2.0128 -4.1540 40 1 2.9767 -2.3267 -2.8715 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086875348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:02 Heat of formation + Delta-G solvation = -28.670434 kcal Electronic energy + Delta-G solvation = -16881.051247 eV Core-core repulsion = 14501.383370 eV Total energy + Delta-G solvation = -2379.667877 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49123 -35.10973 -33.03948 -32.17503 -29.62390 -27.35034 -26.85138 -25.64994 -24.84055 -21.60827 -20.75775 -19.69672 -18.02388 -16.51905 -15.04904 -14.93397 -14.43072 -14.18730 -13.83679 -13.59796 -12.83052 -12.75029 -12.53440 -11.87435 -11.76491 -11.57676 -11.32256 -11.24746 -11.16290 -10.92706 -10.89593 -10.65865 -10.60989 -10.25955 -10.17107 -10.04327 -9.79849 -9.62834 -9.34929 -8.70145 -8.40958 -7.15657 -5.99458 -4.06287 3.29586 3.36525 3.39938 4.41944 4.93228 4.98603 5.05409 5.31272 5.37879 5.39950 5.60470 5.64414 5.79447 5.84018 5.91201 5.98913 6.04504 6.12095 6.16409 6.24796 6.35800 6.37160 6.41616 6.49659 6.53918 6.68413 6.77448 6.81345 6.99107 7.00586 7.27882 7.39579 7.60604 7.81672 8.04405 8.28191 8.48256 8.78222 9.08715 9.59734 11.06306 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037760 B = 0.007678 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.342883 B = 3645.957611 C = 4035.107869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.211 3.789 3 H 0.007 0.993 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.686 5.686 13 C 0.102 3.898 14 H 0.040 0.960 15 C -0.107 4.107 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.105 4.105 19 C -0.070 4.070 20 C -0.145 4.145 21 C -0.136 4.136 22 H 0.008 0.992 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.260 0.740 26 H 0.332 0.668 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.599 -0.383 -12.297 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 H 0.025 0.975 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.319 5.319 13 C -0.009 4.009 14 H 0.058 0.942 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.143 4.143 19 C -0.071 4.071 20 C -0.202 4.202 21 C -0.193 4.193 22 H 0.027 0.973 23 H 0.047 0.953 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.153 0.847 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.883 -0.354 -12.399 12.997 hybrid contribution 1.123 -0.047 1.380 1.780 sum 5.006 -0.401 -11.019 12.109 Atomic orbital electron populations 1.21714 0.98079 0.99687 0.98288 1.19201 0.92522 0.92514 0.85392 0.97495 1.21451 1.31493 1.12394 0.91022 0.92556 1.24913 0.95012 0.94970 0.98947 1.69914 1.36617 1.22819 1.23343 0.86594 0.78508 0.80084 0.82781 1.20824 1.21208 1.19904 1.60813 1.39808 1.18565 1.12739 1.21528 0.91848 0.94689 0.92817 0.94212 1.21623 0.98570 0.98552 0.95781 1.21554 0.97129 0.99128 0.97963 1.21558 0.95797 1.00661 0.97546 1.21561 0.97382 0.98953 0.96417 1.20759 0.95473 0.95660 0.95171 1.21908 0.97398 1.01965 0.98944 1.21867 1.00271 0.96582 1.00543 0.97314 0.95269 0.90938 0.93006 0.84737 0.91777 0.91960 0.92655 0.92501 0.91866 0.92883 0.92570 0.92354 0.91847 0.93272 0.92879 0.92332 0.94018 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 9.21 37.16 0.34 -2.68 16 2 C 0.21 5.39 2.73 -68.86 -0.19 5.20 16 3 H 0.01 0.21 7.05 -51.93 -0.37 -0.16 16 4 C -0.52 -14.45 8.59 -34.44 -0.30 -14.74 16 5 H 0.06 1.52 7.40 -52.49 -0.39 1.14 16 6 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 7 N -0.89 -25.66 11.40 55.43 0.63 -25.02 16 8 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.69 -14.59 5.69 -100.95 -0.57 -15.17 16 13 C 0.10 1.85 1.72 -67.71 -0.12 1.73 16 14 H 0.04 0.82 7.10 -51.93 -0.37 0.45 16 15 C -0.11 -1.77 5.26 -26.73 -0.14 -1.91 16 16 C -0.12 -1.63 5.92 -26.74 -0.16 -1.79 16 17 C -0.12 -1.44 5.65 -26.74 -0.15 -1.59 16 18 C -0.11 -1.37 4.73 -26.73 -0.13 -1.50 16 19 C -0.07 -1.05 0.52 -154.51 -0.08 -1.13 16 20 C -0.14 -2.21 8.27 37.15 0.31 -1.90 16 21 C -0.14 -1.90 7.60 37.16 0.28 -1.62 16 22 H 0.01 0.19 6.62 -51.93 -0.34 -0.16 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.99 6.26 -51.93 -0.33 1.66 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.33 7.01 4.70 -39.29 -0.18 6.82 16 27 H 0.06 1.05 6.43 -51.93 -0.33 0.71 16 28 H 0.06 1.14 6.62 -51.93 -0.34 0.80 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.05 6.27 -51.93 -0.33 0.73 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.80 4.81 -51.93 -0.25 0.55 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.97 7.18 -51.93 -0.37 0.60 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -27.84 291.91 -7.86 -35.70 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.88 Total: 3.95 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.42 Total: -20.25 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.06 Total: -40.19 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.84 -7.86 -35.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086875348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.026 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds