Wall clock time and date at job start Mon Mar 30 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46573 * 2 1 4 4 C 1.50701 * 109.47136 * 120.00005 * 2 1 3 5 5 H 1.07991 * 119.99622 * 120.00318 * 4 2 1 6 6 C 1.37879 * 119.99820 * 299.72659 * 4 2 1 7 7 N 1.31512 * 120.00053 * 0.27458 * 6 4 2 8 8 Si 1.86796 * 119.99723 * 180.27803 * 6 4 2 9 9 H 1.48504 * 109.47396 * 90.00070 * 8 6 4 10 10 H 1.48504 * 109.47232 * 209.99615 * 8 6 4 11 11 H 1.48500 * 109.47289 * 329.99737 * 8 6 4 12 12 N 1.46901 * 109.47135 * 240.00099 * 2 1 3 13 13 C 1.46898 * 110.99720 * 101.75161 * 12 2 1 14 14 H 1.08992 * 109.47579 * 23.96360 * 13 12 2 15 15 C 1.53002 * 109.47120 * 263.95921 * 13 12 2 16 16 C 1.53001 * 109.46834 * 180.02562 * 15 13 12 17 17 C 1.52989 * 109.47373 * 60.00321 * 16 15 13 18 18 C 1.53002 * 109.46879 * 299.99652 * 17 16 15 19 19 C 1.52994 * 109.47267 * 60.00431 * 18 17 16 20 20 C 1.52995 * 109.47499 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.47451 * 59.99474 * 19 18 17 22 22 H 1.08997 * 109.47393 * 65.95261 * 1 2 3 23 23 H 1.09003 * 109.46796 * 185.95441 * 1 2 3 24 24 H 1.09001 * 109.47102 * 305.94894 * 1 2 3 25 25 H 0.97000 * 120.00137 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99658 * 225.70843 * 12 2 1 27 27 H 1.09000 * 109.47042 * 300.00036 * 15 13 12 28 28 H 1.08996 * 109.47081 * 60.00304 * 15 13 12 29 29 H 1.09001 * 109.46877 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.46907 * 299.99593 * 16 15 13 31 31 H 1.09000 * 109.47698 * 59.99757 * 17 16 15 32 32 H 1.09000 * 109.47371 * 180.02562 * 17 16 15 33 33 H 1.09010 * 109.46890 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47518 * 299.99685 * 18 17 16 35 35 H 1.09001 * 109.47529 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.47221 * 299.99586 * 20 19 18 37 37 H 1.09002 * 109.47507 * 59.99742 * 20 19 18 38 38 H 1.09000 * 109.47258 * 300.00826 * 21 19 18 39 39 H 1.09003 * 109.46709 * 59.99877 * 21 19 18 40 40 H 1.08997 * 109.47193 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.7039 -0.2360 2.4827 7 7 0.9478 0.8332 2.6034 8 14 2.3330 -1.1121 4.0079 9 1 3.6425 -0.5354 4.4054 10 1 1.3592 -0.9387 5.1155 11 1 2.4976 -2.5587 3.7154 12 7 2.0197 -0.6925 -1.1995 13 6 2.4585 0.2688 -2.2199 14 1 2.7247 1.2110 -1.7411 15 6 1.3236 0.5067 -3.2180 16 6 1.7809 1.5074 -4.2812 17 6 2.9990 0.9475 -5.0182 18 6 4.1340 0.7095 -4.0201 19 6 3.6768 -0.2912 -2.9570 20 6 4.8119 -0.5296 -1.9593 21 6 3.3028 -1.6139 -3.6289 22 1 -0.3634 0.4187 -0.9384 23 1 -0.3633 -1.0222 0.1066 24 1 -0.3633 0.6033 0.8319 25 1 0.7171 1.1672 3.4844 26 1 2.7604 -1.3372 -0.9676 27 1 1.0575 -0.4356 -3.6970 28 1 0.4555 0.9052 -2.6929 29 1 0.9721 1.6772 -4.9920 30 1 2.0472 2.4497 -3.8025 31 1 2.7327 0.0051 -5.4969 32 1 3.3251 1.6606 -5.7754 33 1 5.0021 0.3110 -4.5454 34 1 4.4005 1.6519 -3.5415 35 1 4.4864 -1.2429 -1.2021 36 1 5.6796 -0.9288 -2.4846 37 1 5.0788 0.4126 -1.4805 38 1 2.4943 -1.4444 -4.3400 39 1 4.1707 -2.0128 -4.1540 40 1 2.9767 -2.3267 -2.8715 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086875348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:01 Heat of formation + Delta-G solvation = -44.446954 kcal Electronic energy + Delta-G solvation = -16881.735369 eV Core-core repulsion = 14501.383370 eV Total energy + Delta-G solvation = -2380.351998 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79585 -36.93421 -34.43847 -33.90744 -31.26232 -28.92714 -28.06864 -27.34994 -26.58123 -23.02703 -22.03185 -21.51749 -19.45299 -18.37220 -16.87554 -16.43097 -15.87169 -15.51630 -15.33428 -14.97270 -14.61917 -14.15844 -13.84463 -13.46369 -13.34037 -12.97968 -12.88506 -12.77987 -12.68296 -12.57714 -12.27593 -12.19749 -12.14213 -12.04083 -11.87019 -11.60583 -11.11828 -11.00174 -10.85546 -10.56296 -10.52698 -8.96706 -8.13339 -6.28710 1.38910 1.40124 1.50682 2.39556 3.13962 3.60646 3.78599 3.87809 4.04716 4.24297 4.44334 4.47637 4.57903 4.59590 4.68950 4.79699 4.86445 4.88562 4.95192 5.00451 5.08845 5.13468 5.19049 5.22471 5.25757 5.28372 5.32940 5.33492 5.47276 5.50702 5.53042 5.61083 5.67069 5.78763 5.96539 6.19038 6.51091 6.84536 7.09518 7.42150 8.91494 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037760 B = 0.007678 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.342883 B = 3645.957611 C = 4035.107869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.219 3.781 3 H -0.030 1.030 4 C -0.543 4.543 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.681 5.681 13 C 0.100 3.900 14 H 0.007 0.993 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.103 4.103 19 C -0.067 4.067 20 C -0.143 4.143 21 C -0.131 4.131 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.048 0.952 25 H 0.262 0.738 26 H 0.333 0.667 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.722 -1.319 -13.902 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 H -0.012 1.012 4 C -0.582 4.582 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.313 5.313 13 C -0.011 4.011 14 H 0.025 0.975 15 C -0.141 4.141 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.141 4.141 19 C -0.067 4.067 20 C -0.201 4.201 21 C -0.188 4.188 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.153 0.847 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.011 -1.293 -14.024 14.948 hybrid contribution 0.767 0.277 1.861 2.032 sum 5.778 -1.016 -12.163 13.504 Atomic orbital electron populations 1.21536 0.98053 0.98815 0.98079 1.18967 0.92516 0.90694 0.86823 1.01240 1.21773 1.31719 1.12597 0.92100 0.92477 1.25745 0.95133 0.95646 1.02055 1.70050 1.37497 1.24047 1.24087 0.85533 0.77999 0.79136 0.78829 1.20181 1.20800 1.19125 1.60776 1.40195 1.18842 1.11490 1.21613 0.94344 0.92668 0.92433 0.97485 1.21565 0.96880 0.99665 0.95995 1.21536 0.98738 0.97752 0.97402 1.21550 0.94330 1.01739 0.97428 1.21559 0.98659 0.97894 0.95971 1.20741 0.93570 0.96938 0.95469 1.21899 0.98606 1.00764 0.98811 1.21822 1.01523 0.95249 1.00163 0.95772 0.95748 0.93329 0.92905 0.84714 0.91108 0.94641 0.90787 0.93419 0.90756 0.90565 0.90169 0.93268 0.93823 0.90452 0.94383 0.91697 0.91560 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.56 9.21 71.98 0.66 -4.90 16 2 C 0.22 11.58 2.73 44.17 0.12 11.70 16 3 H -0.03 -1.78 7.05 -2.38 -0.02 -1.80 16 4 C -0.54 -30.59 8.59 25.60 0.22 -30.37 16 5 H 0.06 3.13 7.40 -2.92 -0.02 3.11 16 6 C 0.01 0.77 5.31 84.66 0.45 1.22 16 7 N -0.92 -54.29 11.40 21.45 0.24 -54.05 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 N -0.68 -29.65 5.69 -473.29 -2.69 -32.34 16 13 C 0.10 3.68 1.72 44.92 0.08 3.76 16 14 H 0.01 0.31 7.10 -2.39 -0.02 0.29 16 15 C -0.10 -3.37 5.26 30.60 0.16 -3.21 16 16 C -0.12 -2.97 5.92 30.59 0.18 -2.79 16 17 C -0.11 -2.37 5.65 30.59 0.17 -2.20 16 18 C -0.10 -2.41 4.73 30.59 0.14 -2.26 16 19 C -0.07 -1.91 0.52 -52.18 -0.03 -1.94 16 20 C -0.14 -4.26 8.27 71.98 0.60 -3.66 16 21 C -0.13 -3.33 7.60 71.98 0.55 -2.79 16 22 H 0.02 1.13 6.62 -2.39 -0.02 1.12 16 23 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.05 2.75 6.26 -2.39 -0.01 2.74 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.33 14.32 4.70 -89.69 -0.42 13.89 16 27 H 0.07 2.21 6.43 -2.39 -0.02 2.20 16 28 H 0.03 1.32 6.62 -2.39 -0.02 1.31 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.44 6.43 -2.39 -0.02 1.42 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 1.45 6.27 -2.39 -0.01 1.44 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.57 4.81 -2.39 -0.01 1.56 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 1.33 7.18 -2.39 -0.02 1.32 16 Total: -1.00 -60.94 291.91 3.46 -57.48 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.58 Total: 20.08 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 3.31 Total: -37.44 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.45 Total: -86.39 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -60.94 3.46 -57.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086875348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.036 kcal (2) G-P(sol) polarization free energy of solvation -60.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds