Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.50703 * 109.46955 * 119.99672 * 2 1 3 5 5 H 1.08000 * 119.99818 * 120.00068 * 4 2 1 6 6 C 1.37872 * 119.99994 * 299.99940 * 4 2 1 7 7 N 1.31514 * 120.00366 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99927 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47190 * 89.99824 * 8 6 4 10 10 H 1.48497 * 109.46961 * 210.00373 * 8 6 4 11 11 H 1.48505 * 109.46814 * 329.99949 * 8 6 4 12 12 N 1.46899 * 109.47117 * 239.99990 * 2 1 3 13 13 C 1.46899 * 111.00116 * 85.00033 * 12 2 1 14 14 H 1.08992 * 109.47259 * 325.00252 * 13 12 2 15 15 C 1.53002 * 109.47000 * 85.00180 * 13 12 2 16 16 C 1.52997 * 109.46978 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47164 * 299.99874 * 16 15 13 18 18 C 1.52997 * 109.47127 * 59.99836 * 17 16 15 19 19 C 1.52996 * 109.46973 * 204.99731 * 13 12 2 20 20 C 1.53001 * 109.47302 * 60.00032 * 19 13 12 21 21 C 1.53002 * 109.47346 * 300.00379 * 19 13 12 22 22 H 1.08999 * 109.47248 * 300.00689 * 1 2 3 23 23 H 1.09001 * 109.46980 * 60.00113 * 1 2 3 24 24 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 25 25 H 0.97000 * 120.00584 * 179.97438 * 7 6 4 26 26 H 1.00907 * 110.99841 * 208.95310 * 12 2 1 27 27 H 1.09002 * 109.47097 * 299.99813 * 15 13 12 28 28 H 1.09001 * 109.47142 * 59.99778 * 15 13 12 29 29 H 1.09001 * 109.47375 * 59.99908 * 16 15 13 30 30 H 1.09000 * 109.47140 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.46505 * 299.99708 * 17 16 15 32 32 H 1.08996 * 109.46884 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46832 * 60.00321 * 18 17 16 35 35 H 1.09002 * 109.47508 * 179.97438 * 20 19 13 36 36 H 1.09000 * 109.47437 * 300.00386 * 20 19 13 37 37 H 1.09001 * 109.47109 * 59.99598 * 20 19 13 38 38 H 1.09000 * 109.46986 * 299.99746 * 21 19 13 39 39 H 1.08993 * 109.47662 * 59.99968 * 21 19 13 40 40 H 1.09002 * 109.47075 * 180.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 1 1.2577 0.9329 -2.2907 15 6 3.4112 0.9808 -2.3224 16 6 3.4763 1.9343 -3.5171 17 6 3.3705 1.1325 -4.8159 18 6 2.0419 0.3742 -4.8404 19 6 1.9771 -0.5798 -3.6453 20 6 0.6485 -1.3381 -3.6699 21 6 3.1349 -1.5769 -3.7241 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7089 1.1616 3.4844 26 1 2.9174 -1.1205 -1.0287 27 1 3.4863 1.5524 -1.3973 28 1 4.2360 0.2704 -2.3785 29 1 2.6515 2.6447 -3.4605 30 1 4.4227 2.4748 -3.4994 31 1 4.1954 0.4222 -4.8725 32 1 3.4174 1.8118 -5.6671 33 1 1.9668 -0.1974 -5.7655 34 1 1.2171 1.0845 -4.7838 35 1 0.5732 -1.9094 -4.5952 36 1 0.6018 -2.0170 -2.8185 37 1 -0.1764 -0.6278 -3.6137 38 1 4.0814 -1.0367 -3.7067 39 1 3.0883 -2.2559 -2.8728 40 1 3.0600 -2.1482 -4.6494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086875356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = -31.758571 kcal Electronic energy + Delta-G solvation = -16863.783513 eV Core-core repulsion = 14483.981724 eV Total energy + Delta-G solvation = -2379.801789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.43688 -35.14206 -32.88356 -32.30205 -29.67088 -27.17250 -26.90710 -25.37545 -24.88604 -21.95789 -20.69667 -19.55547 -18.05757 -16.39444 -15.04244 -14.96347 -14.39848 -14.22306 -13.68581 -13.45006 -13.02491 -12.63984 -12.58600 -12.21060 -11.58463 -11.49195 -11.33623 -11.18794 -11.09180 -10.92543 -10.78921 -10.68083 -10.46228 -10.36802 -10.07737 -10.07330 -9.85805 -9.69940 -9.38283 -8.76389 -8.43585 -7.09992 -5.99306 -4.05232 3.30542 3.37355 3.41192 4.42534 4.96529 5.02815 5.06048 5.32072 5.39271 5.51399 5.60441 5.70734 5.74472 5.84762 5.87443 5.93790 6.10334 6.16261 6.25661 6.27942 6.34610 6.41906 6.42402 6.49807 6.58464 6.65006 6.79009 6.92274 6.97263 7.01805 7.22242 7.32123 7.60080 7.82657 7.96732 8.33186 8.48818 8.76509 9.07438 9.60696 11.06926 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038570 B = 0.007255 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.771246 B = 3858.640470 C = 3980.128708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.680 5.680 13 C 0.101 3.899 14 H 0.067 0.933 15 C -0.149 4.149 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.109 4.109 19 C -0.051 4.051 20 C -0.128 4.128 21 C -0.140 4.140 22 H 0.078 0.922 23 H 0.003 0.997 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -0.334 -12.629 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.309 5.309 13 C -0.010 4.010 14 H 0.085 0.915 15 C -0.188 4.188 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.052 4.052 20 C -0.186 4.186 21 C -0.197 4.197 22 H 0.096 0.904 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.541 -0.480 -12.622 12.885 hybrid contribution 1.066 0.226 1.156 1.589 sum 3.606 -0.255 -11.466 12.023 Atomic orbital electron populations 1.21706 0.98099 0.99161 0.99124 1.19066 0.92368 0.92359 0.85699 0.98233 1.21284 1.31202 1.12384 0.90581 0.92371 1.24910 0.95105 0.95015 0.98975 1.69900 1.36751 1.22960 1.23327 0.86565 0.78442 0.80092 0.82690 1.20849 1.21261 1.19897 1.60790 1.31803 1.32510 1.05787 1.21470 0.95324 0.92928 0.91258 0.91461 1.22324 0.99680 0.98896 0.97937 1.21474 1.00970 0.97921 0.94895 1.21563 0.98179 0.98718 0.97145 1.21623 0.97184 0.98043 0.97802 1.20476 0.95754 0.94884 0.94053 1.21697 0.95769 1.00094 1.00998 1.21902 0.97763 0.98852 1.01171 0.90355 0.97828 0.95115 0.93027 0.85375 0.91898 0.92104 0.92382 0.92862 0.91979 0.92896 0.92594 0.92397 0.94497 0.90825 0.93716 0.92949 0.91806 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.17 37.16 0.34 -2.73 16 2 C 0.21 5.34 2.41 -68.86 -0.17 5.18 16 3 H 0.00 0.00 7.11 -51.93 -0.37 -0.37 16 4 C -0.52 -14.14 8.59 -34.44 -0.30 -14.44 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.99 16 8 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.68 -14.13 4.80 -100.96 -0.48 -14.61 16 13 C 0.10 1.80 1.42 -67.71 -0.10 1.70 16 14 H 0.07 1.33 7.11 -51.93 -0.37 0.96 16 15 C -0.15 -2.45 4.88 -26.73 -0.13 -2.58 16 16 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 17 C -0.12 -1.45 5.65 -26.73 -0.15 -1.60 16 18 C -0.11 -1.41 4.73 -26.71 -0.13 -1.53 16 19 C -0.05 -0.76 0.59 -154.48 -0.09 -0.85 16 20 C -0.13 -1.97 8.32 37.16 0.31 -1.66 16 21 C -0.14 -1.95 7.51 37.16 0.28 -1.67 16 22 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 23 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 26 H 0.33 6.81 7.22 -39.29 -0.28 6.53 16 27 H 0.06 1.18 7.43 -51.93 -0.39 0.80 16 28 H 0.06 0.96 6.42 -51.93 -0.33 0.63 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.28 7.60 -51.93 -0.39 0.88 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.70 4.81 -51.93 -0.25 0.45 16 39 H 0.06 0.97 7.21 -51.93 -0.37 0.59 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -27.45 295.53 -7.94 -35.39 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.13 Total: 3.68 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.38 Total: -20.31 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.14 Total: -39.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.45 -7.94 -35.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086875356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.628 kcal (2) G-P(sol) polarization free energy of solvation -27.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds