Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.50703 * 109.46955 * 119.99672 * 2 1 3 5 5 H 1.08000 * 119.99818 * 120.00068 * 4 2 1 6 6 C 1.37872 * 119.99994 * 299.99940 * 4 2 1 7 7 N 1.31514 * 120.00366 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99927 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47190 * 89.99824 * 8 6 4 10 10 H 1.48497 * 109.46961 * 210.00373 * 8 6 4 11 11 H 1.48505 * 109.46814 * 329.99949 * 8 6 4 12 12 N 1.46899 * 109.47117 * 239.99990 * 2 1 3 13 13 C 1.46899 * 111.00116 * 85.00033 * 12 2 1 14 14 H 1.08992 * 109.47259 * 325.00252 * 13 12 2 15 15 C 1.53002 * 109.47000 * 85.00180 * 13 12 2 16 16 C 1.52997 * 109.46978 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47164 * 299.99874 * 16 15 13 18 18 C 1.52997 * 109.47127 * 59.99836 * 17 16 15 19 19 C 1.52996 * 109.46973 * 204.99731 * 13 12 2 20 20 C 1.53001 * 109.47302 * 60.00032 * 19 13 12 21 21 C 1.53002 * 109.47346 * 300.00379 * 19 13 12 22 22 H 1.08999 * 109.47248 * 300.00689 * 1 2 3 23 23 H 1.09001 * 109.46980 * 60.00113 * 1 2 3 24 24 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 25 25 H 0.97000 * 120.00584 * 179.97438 * 7 6 4 26 26 H 1.00907 * 110.99841 * 208.95310 * 12 2 1 27 27 H 1.09002 * 109.47097 * 299.99813 * 15 13 12 28 28 H 1.09001 * 109.47142 * 59.99778 * 15 13 12 29 29 H 1.09001 * 109.47375 * 59.99908 * 16 15 13 30 30 H 1.09000 * 109.47140 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.46505 * 299.99708 * 17 16 15 32 32 H 1.08996 * 109.46884 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46832 * 60.00321 * 18 17 16 35 35 H 1.09002 * 109.47508 * 179.97438 * 20 19 13 36 36 H 1.09000 * 109.47437 * 300.00386 * 20 19 13 37 37 H 1.09001 * 109.47109 * 59.99598 * 20 19 13 38 38 H 1.09000 * 109.46986 * 299.99746 * 21 19 13 39 39 H 1.08993 * 109.47662 * 59.99968 * 21 19 13 40 40 H 1.09002 * 109.47075 * 180.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 1 1.2577 0.9329 -2.2907 15 6 3.4112 0.9808 -2.3224 16 6 3.4763 1.9343 -3.5171 17 6 3.3705 1.1325 -4.8159 18 6 2.0419 0.3742 -4.8404 19 6 1.9771 -0.5798 -3.6453 20 6 0.6485 -1.3381 -3.6699 21 6 3.1349 -1.5769 -3.7241 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7089 1.1616 3.4844 26 1 2.9174 -1.1205 -1.0287 27 1 3.4863 1.5524 -1.3973 28 1 4.2360 0.2704 -2.3785 29 1 2.6515 2.6447 -3.4605 30 1 4.4227 2.4748 -3.4994 31 1 4.1954 0.4222 -4.8725 32 1 3.4174 1.8118 -5.6671 33 1 1.9668 -0.1974 -5.7655 34 1 1.2171 1.0845 -4.7838 35 1 0.5732 -1.9094 -4.5952 36 1 0.6018 -2.0170 -2.8185 37 1 -0.1764 -0.6278 -3.6137 38 1 4.0814 -1.0367 -3.7067 39 1 3.0883 -2.2559 -2.8728 40 1 3.0600 -2.1482 -4.6494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086875356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = -46.887165 kcal Electronic energy + Delta-G solvation = -16864.439538 eV Core-core repulsion = 14483.981724 eV Total energy + Delta-G solvation = -2380.457814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.73583 -36.94923 -34.31461 -33.96166 -31.32946 -28.74252 -28.09745 -27.28310 -26.41021 -23.40272 -21.91106 -21.38394 -19.45736 -18.27754 -16.90069 -16.35656 -15.87420 -15.53464 -15.25968 -14.81881 -14.61369 -14.12162 -13.87648 -13.69693 -13.41098 -12.86578 -12.82197 -12.66535 -12.62058 -12.46971 -12.33269 -12.19724 -12.08746 -11.98334 -11.93812 -11.55479 -11.11783 -10.97660 -10.88554 -10.66807 -10.54903 -8.84867 -8.12536 -6.26350 1.40445 1.41712 1.52341 2.41186 3.15903 3.64508 3.80557 3.90076 4.15958 4.27561 4.33894 4.51256 4.54461 4.63257 4.65761 4.81226 4.88075 4.94127 4.98500 5.05482 5.14270 5.16767 5.19024 5.22667 5.24306 5.28004 5.29396 5.36857 5.46497 5.49424 5.59051 5.70321 5.76605 5.77694 5.91266 6.24393 6.55085 6.85643 7.07848 7.44399 8.93120 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038570 B = 0.007255 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.771246 B = 3858.640470 C = 3980.128708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.220 3.780 3 H -0.035 1.035 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.673 5.673 13 C 0.101 3.899 14 H 0.041 0.959 15 C -0.144 4.144 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.106 4.106 19 C -0.048 4.048 20 C -0.126 4.126 21 C -0.136 4.136 22 H 0.053 0.947 23 H 0.015 0.985 24 H 0.026 0.974 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -1.126 -14.253 14.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 H -0.017 1.017 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.303 5.303 13 C -0.010 4.010 14 H 0.059 0.941 15 C -0.183 4.183 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.144 4.144 19 C -0.048 4.048 20 C -0.183 4.183 21 C -0.193 4.193 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.594 -1.275 -14.269 14.770 hybrid contribution 0.720 0.499 1.636 1.856 sum 4.314 -0.775 -12.633 13.372 Atomic orbital electron populations 1.21513 0.98183 0.98551 0.98495 1.18816 0.92236 0.90639 0.87132 1.01736 1.21614 1.31405 1.12544 0.91737 0.92386 1.25731 0.95226 0.95692 1.02034 1.70034 1.37631 1.24185 1.24030 0.85517 0.77955 0.79093 0.78812 1.20182 1.20915 1.19223 1.60729 1.31815 1.32758 1.04953 1.21539 0.95157 0.92632 0.91630 0.94052 1.22227 0.99037 0.99174 0.97873 1.21462 1.01501 0.97445 0.94565 1.21546 0.97903 0.98976 0.96607 1.21611 0.97592 0.97720 0.97434 1.20460 0.96098 0.95230 0.93047 1.21661 0.95758 0.99671 1.01208 1.21861 0.97417 0.98421 1.01572 0.92806 0.96552 0.95476 0.92957 0.85322 0.95350 0.91221 0.93110 0.91430 0.91030 0.90602 0.90302 0.92930 0.91962 0.93283 0.94618 0.92233 0.93494 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.65 9.17 71.98 0.66 -4.99 16 2 C 0.22 11.48 2.41 44.17 0.11 11.59 16 3 H -0.03 -2.03 7.11 -2.39 -0.02 -2.05 16 4 C -0.53 -29.90 8.59 25.60 0.22 -29.68 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 N -0.67 -28.63 4.80 -473.32 -2.27 -30.90 16 13 C 0.10 3.61 1.42 44.92 0.06 3.67 16 14 H 0.04 1.68 7.11 -2.39 -0.02 1.67 16 15 C -0.14 -4.74 4.88 30.59 0.15 -4.59 16 16 C -0.11 -2.89 5.92 30.60 0.18 -2.71 16 17 C -0.11 -2.38 5.65 30.60 0.17 -2.20 16 18 C -0.11 -2.42 4.73 30.61 0.14 -2.28 16 19 C -0.05 -1.34 0.59 -52.16 -0.03 -1.37 16 20 C -0.13 -3.69 8.32 71.98 0.60 -3.10 16 21 C -0.14 -3.45 7.51 71.98 0.54 -2.91 16 22 H 0.05 3.05 6.07 -2.39 -0.01 3.03 16 23 H 0.02 0.75 7.43 -2.39 -0.02 0.73 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.33 13.87 7.22 -89.69 -0.65 13.22 16 27 H 0.03 1.10 7.43 -2.39 -0.02 1.08 16 28 H 0.07 2.15 6.42 -2.39 -0.02 2.13 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.41 6.43 -2.39 -0.02 1.40 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.67 7.60 -2.39 -0.02 1.65 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.42 4.81 -2.39 -0.01 1.41 16 39 H 0.05 1.35 7.21 -2.39 -0.02 1.33 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -59.80 295.53 3.60 -56.21 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.34 Total: 19.78 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 3.26 Total: -37.44 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -2.03 Total: -84.76 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -59.80 3.60 -56.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086875356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.320 kcal (2) G-P(sol) polarization free energy of solvation -59.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds