Wall clock time and date at job start Mon Mar 30 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47451 * 2 1 4 4 C 1.50699 * 109.47329 * 239.99511 * 2 1 3 5 5 H 1.07999 * 120.00680 * 245.24948 * 4 2 1 6 6 C 1.37882 * 119.99739 * 65.25625 * 4 2 1 7 7 N 1.31514 * 120.00021 * 9.10737 * 6 4 2 8 8 Si 1.86797 * 120.00011 * 189.11179 * 6 4 2 9 9 H 1.48503 * 109.46836 * 179.97438 * 8 6 4 10 10 H 1.48490 * 109.47280 * 299.99568 * 8 6 4 11 11 H 1.48504 * 109.47112 * 59.99915 * 8 6 4 12 12 N 1.46904 * 109.46713 * 120.00019 * 2 1 3 13 13 C 1.46894 * 111.00035 * 274.17683 * 12 2 1 14 14 H 1.09010 * 109.47611 * 339.87728 * 13 12 2 15 15 C 1.52995 * 109.47333 * 99.87926 * 13 12 2 16 16 C 1.53001 * 109.47535 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.46865 * 299.99844 * 16 15 13 18 18 C 1.53003 * 109.47035 * 60.00000 * 17 16 15 19 19 C 1.53001 * 109.47294 * 299.99738 * 18 17 16 20 20 C 1.52997 * 109.47126 * 300.00311 * 19 18 17 21 21 C 1.52997 * 109.47035 * 180.02562 * 19 18 17 22 22 H 1.09000 * 109.47143 * 178.79778 * 1 2 3 23 23 H 1.08993 * 109.47737 * 298.80089 * 1 2 3 24 24 H 1.09007 * 109.46825 * 58.80025 * 1 2 3 25 25 H 0.97003 * 120.00295 * 356.26951 * 7 6 4 26 26 H 1.00897 * 111.00131 * 38.13375 * 12 2 1 27 27 H 1.09006 * 109.46918 * 299.99893 * 15 13 12 28 28 H 1.08998 * 109.47198 * 60.00060 * 15 13 12 29 29 H 1.08998 * 109.47005 * 59.99727 * 16 15 13 30 30 H 1.09001 * 109.47199 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.46911 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.47214 * 299.99755 * 17 16 15 33 33 H 1.08996 * 109.47039 * 60.00275 * 18 17 16 34 34 H 1.09000 * 109.47003 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47229 * 179.97438 * 20 19 18 36 36 H 1.09000 * 109.46914 * 299.99856 * 20 19 18 37 37 H 1.09006 * 109.47176 * 59.99426 * 20 19 18 38 38 H 1.08998 * 109.47307 * 299.99916 * 21 19 18 39 39 H 1.08994 * 109.46950 * 60.00291 * 21 19 18 40 40 H 1.09011 * 109.46559 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5815 -1.6354 -1.1336 6 6 1.7909 -0.1797 -2.4798 7 7 1.2836 1.0283 -2.5943 8 14 2.1843 -1.1763 -4.0099 9 1 1.8347 -0.3869 -5.2182 10 1 3.6335 -1.4991 -4.0314 11 1 1.3968 -2.4353 -3.9967 12 7 2.0195 -0.6925 1.1995 13 6 2.1008 0.2271 2.3420 14 1 2.1294 1.2549 1.9800 15 6 0.8759 0.0362 3.2386 16 6 0.9601 0.9946 4.4283 17 6 2.2297 0.7014 5.2303 18 6 3.4547 0.8924 4.3337 19 6 3.3704 -0.0659 3.1440 20 6 3.3307 -1.5083 3.6528 21 6 4.5958 0.1247 2.2478 22 1 -0.3633 -1.0274 -0.0216 23 1 -0.3634 0.4950 0.9004 24 1 -0.3633 0.5324 -0.8791 25 1 1.0288 1.5246 -1.8007 26 1 1.4415 -1.4902 1.4178 27 1 -0.0287 0.2455 2.6673 28 1 0.8473 -0.9914 3.6007 29 1 0.9885 2.0221 4.0658 30 1 0.0872 0.8588 5.0668 31 1 2.2900 1.3845 6.0776 32 1 2.2014 -0.3261 5.5928 33 1 3.4831 1.9200 3.9713 34 1 4.3592 0.6840 4.9052 35 1 3.2702 -2.1910 2.8052 36 1 4.2351 -1.7170 4.2241 37 1 2.4579 -1.6443 4.2916 38 1 4.6245 1.1522 1.8853 39 1 5.4999 -0.0845 2.8194 40 1 4.5354 -0.5579 1.4000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086875358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:07 Heat of formation + Delta-G solvation = -32.131362 kcal Electronic energy + Delta-G solvation = -16915.111761 eV Core-core repulsion = 14535.293807 eV Total energy + Delta-G solvation = -2379.817954 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52375 -35.53261 -32.94756 -32.43614 -29.57685 -27.29599 -26.84062 -25.45252 -24.49841 -21.79711 -21.04297 -20.20171 -18.11787 -16.71635 -15.31594 -14.62678 -14.54540 -14.00081 -13.69653 -13.49636 -13.20038 -12.78690 -12.68286 -12.13529 -11.66239 -11.59421 -11.43735 -11.38940 -11.09677 -10.92703 -10.84281 -10.80170 -10.63008 -10.47008 -10.06578 -10.01561 -9.96594 -9.77704 -9.62641 -8.55169 -8.15173 -7.20766 -6.26592 -3.94880 3.48489 3.50030 3.68717 4.57567 4.87897 4.94356 4.99184 5.29393 5.42816 5.43579 5.52781 5.64000 5.66407 5.74801 5.81378 5.85342 6.08997 6.10249 6.18654 6.22135 6.26596 6.28943 6.35037 6.46376 6.48247 6.52603 6.57484 6.62704 6.76126 6.84702 6.93128 7.05756 7.12863 7.40354 8.03232 8.35078 8.55132 8.72121 8.98817 9.74546 11.10231 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039669 B = 0.007499 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.663837 B = 3732.798774 C = 4053.281787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.202 3.798 3 H 0.024 0.976 4 C -0.576 4.576 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 1.068 2.932 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.290 1.290 12 N -0.667 5.667 13 C 0.099 3.901 14 H 0.062 0.938 15 C -0.149 4.149 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.110 4.110 19 C -0.049 4.049 20 C -0.137 4.137 21 C -0.130 4.130 22 H 0.038 0.962 23 H 0.018 0.982 24 H 0.058 0.942 25 H 0.268 0.732 26 H 0.325 0.675 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.036 0.964 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 -1.512 13.584 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.094 3.906 3 H 0.042 0.958 4 C -0.615 4.615 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.555 5.555 8 Si 0.897 3.103 9 H -0.210 1.210 10 H -0.216 1.216 11 H -0.216 1.216 12 N -0.295 5.295 13 C -0.012 4.012 14 H 0.080 0.920 15 C -0.187 4.187 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.049 4.049 20 C -0.194 4.194 21 C -0.187 4.187 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.164 -1.385 11.715 11.994 hybrid contribution -1.091 0.129 1.925 2.217 sum 1.073 -1.256 13.641 13.740 Atomic orbital electron populations 1.22658 1.01657 0.99844 0.99246 1.19358 0.88642 0.94257 0.88336 0.95843 1.21922 1.37807 1.10692 0.91070 0.92688 1.25742 0.95231 0.96572 1.01246 1.70812 1.41453 1.09810 1.33403 0.83552 0.76186 0.74985 0.75579 1.21044 1.21556 1.21630 1.60697 1.56896 1.08900 1.02959 1.21567 0.92073 0.96805 0.90744 0.91976 1.22413 0.99657 0.99569 0.97097 1.21476 0.97212 0.99664 0.96933 1.21560 0.95082 1.01303 0.97647 1.21633 0.97213 0.99522 0.96419 1.20456 0.95949 0.94717 0.93824 1.21867 1.00097 0.96643 1.00784 1.21703 0.95135 1.01934 0.99957 0.94298 0.96320 0.92346 0.92086 0.85746 0.92015 0.91878 0.92365 0.92789 0.92817 0.91911 0.92441 0.92481 0.91622 0.93996 0.93225 0.93821 0.94473 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.73 37.15 0.32 -3.71 16 2 C 0.20 4.99 2.17 -68.87 -0.15 4.84 16 3 H 0.02 0.65 6.71 -51.93 -0.35 0.30 16 4 C -0.58 -16.10 8.77 -34.44 -0.30 -16.40 16 5 H 0.05 1.56 7.83 -52.49 -0.41 1.15 16 6 C 0.02 0.44 5.22 -17.82 -0.09 0.34 16 7 N -0.92 -27.58 13.10 55.43 0.73 -26.85 16 8 Si 1.07 25.49 29.91 -169.99 -5.08 20.40 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.67 -13.69 4.54 -100.96 -0.46 -14.15 16 13 C 0.10 1.73 1.61 -67.72 -0.11 1.62 16 14 H 0.06 1.22 7.19 -51.92 -0.37 0.85 16 15 C -0.15 -2.24 4.75 -26.73 -0.13 -2.37 16 16 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 17 C -0.12 -1.41 5.65 -26.73 -0.15 -1.56 16 18 C -0.11 -1.45 4.73 -26.73 -0.13 -1.57 16 19 C -0.05 -0.74 0.59 -154.51 -0.09 -0.83 16 20 C -0.14 -1.94 7.62 37.16 0.28 -1.65 16 21 C -0.13 -2.17 8.32 37.16 0.31 -1.86 16 22 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.02 0.37 5.92 -51.93 -0.31 0.07 16 24 H 0.06 1.48 6.37 -51.93 -0.33 1.15 16 25 H 0.27 8.00 5.93 -40.82 -0.24 7.76 16 26 H 0.33 6.46 7.99 -39.29 -0.31 6.15 16 27 H 0.06 1.01 5.94 -51.93 -0.31 0.70 16 28 H 0.06 0.91 6.42 -51.93 -0.33 0.58 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.03 7.60 -51.93 -0.39 0.63 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.65 4.81 -51.93 -0.25 0.40 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.49 7.60 -51.92 -0.39 1.10 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -28.60 292.98 -7.74 -36.33 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.94 Total: 4.65 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -0.39 Total: -24.80 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.27 Total: -41.00 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.60 -7.74 -36.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086875358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.200 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds