Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47451 * 2 1 4 4 C 1.50699 * 109.47329 * 239.99511 * 2 1 3 5 5 H 1.07999 * 120.00680 * 245.24948 * 4 2 1 6 6 C 1.37882 * 119.99739 * 65.25625 * 4 2 1 7 7 N 1.31514 * 120.00021 * 9.10737 * 6 4 2 8 8 Si 1.86797 * 120.00011 * 189.11179 * 6 4 2 9 9 H 1.48503 * 109.46836 * 179.97438 * 8 6 4 10 10 H 1.48490 * 109.47280 * 299.99568 * 8 6 4 11 11 H 1.48504 * 109.47112 * 59.99915 * 8 6 4 12 12 N 1.46904 * 109.46713 * 120.00019 * 2 1 3 13 13 C 1.46894 * 111.00035 * 274.17683 * 12 2 1 14 14 H 1.09010 * 109.47611 * 339.87728 * 13 12 2 15 15 C 1.52995 * 109.47333 * 99.87926 * 13 12 2 16 16 C 1.53001 * 109.47535 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.46865 * 299.99844 * 16 15 13 18 18 C 1.53003 * 109.47035 * 60.00000 * 17 16 15 19 19 C 1.53001 * 109.47294 * 299.99738 * 18 17 16 20 20 C 1.52997 * 109.47126 * 300.00311 * 19 18 17 21 21 C 1.52997 * 109.47035 * 180.02562 * 19 18 17 22 22 H 1.09000 * 109.47143 * 178.79778 * 1 2 3 23 23 H 1.08993 * 109.47737 * 298.80089 * 1 2 3 24 24 H 1.09007 * 109.46825 * 58.80025 * 1 2 3 25 25 H 0.97003 * 120.00295 * 356.26951 * 7 6 4 26 26 H 1.00897 * 111.00131 * 38.13375 * 12 2 1 27 27 H 1.09006 * 109.46918 * 299.99893 * 15 13 12 28 28 H 1.08998 * 109.47198 * 60.00060 * 15 13 12 29 29 H 1.08998 * 109.47005 * 59.99727 * 16 15 13 30 30 H 1.09001 * 109.47199 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.46911 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.47214 * 299.99755 * 17 16 15 33 33 H 1.08996 * 109.47039 * 60.00275 * 18 17 16 34 34 H 1.09000 * 109.47003 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.47229 * 179.97438 * 20 19 18 36 36 H 1.09000 * 109.46914 * 299.99856 * 20 19 18 37 37 H 1.09006 * 109.47176 * 59.99426 * 20 19 18 38 38 H 1.08998 * 109.47307 * 299.99916 * 21 19 18 39 39 H 1.08994 * 109.46950 * 60.00291 * 21 19 18 40 40 H 1.09011 * 109.46559 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5815 -1.6354 -1.1336 6 6 1.7909 -0.1797 -2.4798 7 7 1.2836 1.0283 -2.5943 8 14 2.1843 -1.1763 -4.0099 9 1 1.8347 -0.3869 -5.2182 10 1 3.6335 -1.4991 -4.0314 11 1 1.3968 -2.4353 -3.9967 12 7 2.0195 -0.6925 1.1995 13 6 2.1008 0.2271 2.3420 14 1 2.1294 1.2549 1.9800 15 6 0.8759 0.0362 3.2386 16 6 0.9601 0.9946 4.4283 17 6 2.2297 0.7014 5.2303 18 6 3.4547 0.8924 4.3337 19 6 3.3704 -0.0659 3.1440 20 6 3.3307 -1.5083 3.6528 21 6 4.5958 0.1247 2.2478 22 1 -0.3633 -1.0274 -0.0216 23 1 -0.3634 0.4950 0.9004 24 1 -0.3633 0.5324 -0.8791 25 1 1.0288 1.5246 -1.8007 26 1 1.4415 -1.4902 1.4178 27 1 -0.0287 0.2455 2.6673 28 1 0.8473 -0.9914 3.6007 29 1 0.9885 2.0221 4.0658 30 1 0.0872 0.8588 5.0668 31 1 2.2900 1.3845 6.0776 32 1 2.2014 -0.3261 5.5928 33 1 3.4831 1.9200 3.9713 34 1 4.3592 0.6840 4.9052 35 1 3.2702 -2.1910 2.8052 36 1 4.2351 -1.7170 4.2241 37 1 2.4579 -1.6443 4.2916 38 1 4.6245 1.1522 1.8853 39 1 5.4999 -0.0845 2.8194 40 1 4.5354 -0.5579 1.4000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086875358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = -48.458773 kcal Electronic energy + Delta-G solvation = -16915.819771 eV Core-core repulsion = 14535.293807 eV Total energy + Delta-G solvation = -2380.525964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81802 -37.33729 -34.40794 -34.04690 -31.16385 -28.84333 -28.09003 -27.09543 -26.31736 -23.10755 -22.69005 -21.65212 -19.54829 -18.62917 -16.72852 -16.16955 -15.75806 -15.59219 -15.46066 -14.87790 -14.70962 -14.16860 -14.00492 -13.78048 -13.49931 -13.04390 -12.92834 -12.77398 -12.69056 -12.46792 -12.25677 -12.20802 -12.08478 -11.98420 -11.93331 -11.66812 -11.21351 -11.05048 -10.93456 -10.53872 -10.27819 -8.90635 -8.54007 -6.24254 1.53911 1.61623 1.80877 2.59350 3.22682 3.50782 3.75070 3.84418 4.07991 4.23012 4.28415 4.43755 4.47432 4.52417 4.55860 4.60113 4.64187 4.76954 4.83260 4.90506 4.92547 5.00555 5.11144 5.15646 5.16973 5.20547 5.23675 5.24729 5.31858 5.41656 5.45739 5.53654 5.68939 5.74137 6.02371 6.21058 6.57274 6.82427 6.85815 7.53828 8.81927 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039669 B = 0.007499 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.663837 B = 3732.798774 C = 4053.281787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.209 3.791 3 H -0.012 1.012 4 C -0.588 4.588 5 H 0.046 0.954 6 C -0.033 4.033 7 N -0.941 5.941 8 Si 1.113 2.887 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.271 1.271 12 N -0.668 5.668 13 C 0.099 3.901 14 H 0.030 0.970 15 C -0.142 4.142 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.047 4.047 20 C -0.131 4.131 21 C -0.127 4.127 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.031 0.969 25 H 0.256 0.744 26 H 0.331 0.669 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.061 0.939 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -2.637 15.621 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 H 0.006 0.994 4 C -0.627 4.627 5 H 0.064 0.936 6 C -0.231 4.231 7 N -0.579 5.579 8 Si 0.936 3.064 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.196 1.196 12 N -0.296 5.296 13 C -0.011 4.011 14 H 0.049 0.951 15 C -0.181 4.181 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.145 4.145 19 C -0.048 4.048 20 C -0.188 4.188 21 C -0.184 4.184 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.148 0.852 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.313 -2.515 13.790 14.207 hybrid contribution -1.101 0.507 1.337 1.805 sum 1.212 -2.009 15.127 15.308 Atomic orbital electron populations 1.22454 1.00344 0.99961 0.99109 1.19089 0.89444 0.92212 0.89300 0.99425 1.22268 1.37419 1.10369 0.92608 0.93552 1.27122 0.94650 0.96706 1.04617 1.70926 1.43267 1.10878 1.32855 0.82969 0.76986 0.74293 0.72148 1.21231 1.20134 1.19635 1.60589 1.56651 1.09391 1.02991 1.21606 0.94907 0.94300 0.90319 0.95143 1.22309 0.97319 1.01057 0.97388 1.21477 0.98959 0.98378 0.96279 1.21549 0.93307 1.02592 0.97604 1.21607 0.99030 0.98171 0.95678 1.20455 0.93620 0.96572 0.94152 1.21808 1.01762 0.94807 1.00411 1.21661 0.97308 0.99950 0.99503 0.93748 0.93962 0.95030 0.93339 0.85158 0.93526 0.90562 0.93273 0.90742 0.90673 0.90753 0.93405 0.90592 0.93572 0.92168 0.91690 0.95470 0.92006 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.50 8.73 71.98 0.63 -6.87 16 2 C 0.21 10.64 2.17 44.17 0.10 10.73 16 3 H -0.01 -0.70 6.71 -2.39 -0.02 -0.72 16 4 C -0.59 -33.63 8.77 25.60 0.22 -33.41 16 5 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 6 C -0.03 -1.94 5.22 84.66 0.44 -1.50 16 7 N -0.94 -58.16 13.10 21.45 0.28 -57.88 16 8 Si 1.11 51.51 29.91 68.60 2.05 53.57 16 9 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 N -0.67 -27.89 4.54 -473.32 -2.15 -30.04 16 13 C 0.10 3.46 1.61 44.92 0.07 3.53 16 14 H 0.03 1.25 7.19 -2.38 -0.02 1.23 16 15 C -0.14 -4.07 4.75 30.59 0.15 -3.92 16 16 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 17 C -0.11 -2.27 5.65 30.59 0.17 -2.10 16 18 C -0.11 -2.54 4.73 30.60 0.14 -2.39 16 19 C -0.05 -1.38 0.59 -52.18 -0.03 -1.42 16 20 C -0.13 -3.38 7.62 71.98 0.55 -2.83 16 21 C -0.13 -4.23 8.32 71.98 0.60 -3.63 16 22 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.75 5.92 -2.39 -0.01 1.73 16 24 H 0.03 1.63 6.37 -2.38 -0.02 1.61 16 25 H 0.26 16.01 5.93 -92.71 -0.55 15.46 16 26 H 0.33 13.07 7.99 -89.70 -0.72 12.36 16 27 H 0.05 1.46 5.94 -2.38 -0.01 1.45 16 28 H 0.08 2.00 6.42 -2.39 -0.02 1.98 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.36 6.43 -2.39 -0.02 1.35 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.37 7.60 -2.39 -0.02 1.35 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.48 4.81 -2.38 -0.01 1.47 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.75 7.60 -2.38 -0.02 1.73 16 Total: -1.00 -63.17 292.98 3.91 -59.26 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.50 Total: 21.34 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 3.22 Total: -46.24 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -1.87 Total: -87.92 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.57 kcal Total: -63.17 3.91 -59.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086875358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.800 kcal (2) G-P(sol) polarization free energy of solvation -63.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds