Wall clock time and date at job start Mon Mar 30 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31369 * 1 3 3 Si 1.86803 * 119.99771 * 2 1 4 4 H 1.48498 * 109.47018 * 239.99580 * 3 2 1 5 5 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47141 * 119.99534 * 3 2 1 7 7 C 1.39035 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36878 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.34784 * 120.00198 * 179.97438 * 9 7 2 11 11 O 1.21597 * 119.99617 * 359.97438 * 10 9 7 12 12 C 1.47653 * 120.00036 * 179.72752 * 10 9 7 13 13 C 1.39628 * 120.58123 * 359.97438 * 12 10 9 14 14 N 1.31640 * 120.56769 * 179.97438 * 13 12 10 15 15 C 1.32008 * 121.93241 * 0.02562 * 14 13 12 16 16 C 1.38229 * 121.11441 * 0.02562 * 15 14 13 17 17 C 1.38572 * 119.29950 * 359.70233 * 16 15 14 18 18 Cl 1.73603 * 120.87872 * 180.29824 * 17 16 15 19 19 H 0.97000 * 120.00524 * 0.02562 * 1 2 3 20 20 H 0.97005 * 119.99956 * 359.97438 * 9 7 2 21 21 H 1.08005 * 119.71357 * 359.97438 * 13 12 10 22 22 H 1.07996 * 119.44314 * 180.02562 * 15 14 13 23 23 H 1.07999 * 120.34442 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1014 1.6964 -1.2124 5 1 1.2826 2.7465 -0.0006 6 1 3.1013 1.6965 1.2125 7 6 2.0089 -1.2041 0.0005 8 1 3.0889 -1.2040 0.0010 9 7 1.3245 -2.3895 0.0005 10 6 1.9985 -3.5568 0.0005 11 8 3.2145 -3.5567 0.0001 12 6 1.2603 -4.8355 0.0066 13 6 -0.1359 -4.8497 0.0129 14 7 -0.7938 -5.9899 0.0179 15 6 -0.1724 -7.1546 0.0175 16 6 1.2079 -7.2277 0.0125 17 6 1.9490 -6.0568 0.0015 18 17 3.6844 -6.1009 -0.0129 19 1 -0.4851 0.8400 -0.0004 20 1 0.3545 -2.3896 0.0005 21 1 -0.6808 -3.9171 0.0138 22 1 -0.7522 -8.0656 0.0213 23 1 1.7035 -8.1873 0.0127 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088109413.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:01 Heat of formation + Delta-G solvation = -3.628638 kcal Electronic energy + Delta-G solvation = -12851.059981 eV Core-core repulsion = 10304.428873 eV Total energy + Delta-G solvation = -2546.631108 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.00006 -37.81477 -36.16192 -34.15799 -31.83314 -31.77611 -30.73899 -25.59722 -23.71922 -23.02490 -19.87388 -18.34671 -17.20748 -16.54203 -15.82628 -14.81266 -14.30271 -14.27509 -13.91763 -13.53051 -13.00464 -12.79021 -12.12809 -11.73034 -11.68508 -11.18543 -10.67410 -10.50588 -10.38904 -9.70081 -9.50902 -9.13621 -8.88340 -8.31632 -8.16581 -6.65725 -3.95824 0.96924 1.27196 2.43716 3.11769 3.16957 3.20945 3.60120 4.00552 4.32288 4.53293 4.69247 4.91726 5.14216 5.18758 5.43097 5.75961 5.82182 5.89733 6.36067 6.70061 7.33900 7.84398 8.06555 8.39735 8.96424 9.29611 9.87075 10.50460 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.008145 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.760016 B = 3436.702581 C = 4142.606611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.289 4.289 8 H 0.110 0.890 9 N -0.537 5.537 10 C 0.460 3.540 11 O -0.574 6.574 12 C -0.140 4.140 13 C 0.123 3.877 14 N -0.483 5.483 15 C 0.099 3.901 16 C -0.174 4.174 17 C 0.035 3.965 18 Cl -0.025 7.025 19 H 0.278 0.722 20 H 0.393 0.607 21 H 0.166 0.834 22 H 0.160 0.840 23 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 -9.900 0.009 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.419 4.419 8 H 0.128 0.872 9 N -0.171 5.171 10 C 0.248 3.752 11 O -0.460 6.460 12 C -0.147 4.147 13 C -0.036 4.036 14 N -0.192 5.192 15 C -0.058 4.058 16 C -0.195 4.195 17 C -0.002 4.002 18 Cl 0.004 6.996 19 H 0.089 0.911 20 H 0.227 0.773 21 H 0.183 0.817 22 H 0.178 0.822 23 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.890 -9.661 0.011 9.702 hybrid contribution 0.776 0.745 -0.006 1.075 sum -0.114 -8.917 0.005 8.918 Atomic orbital electron populations 1.69577 1.06189 1.29164 1.47346 1.25429 0.95730 1.00254 0.96618 0.85796 0.78819 0.79626 0.79395 1.19558 1.20688 1.19553 1.19841 0.93856 0.81930 1.46277 0.87182 1.41919 1.09411 1.04720 1.61099 1.17341 0.87637 0.82656 0.87602 1.90696 1.12343 1.86272 1.56658 1.21330 0.94939 0.95432 1.02951 1.23101 0.89951 0.96807 0.93775 1.67583 1.41046 0.98341 1.12249 1.22733 0.91058 0.96211 0.95791 1.21995 0.95363 0.97835 1.04260 1.21337 0.87120 0.93527 0.98208 1.98400 1.06746 1.98579 1.95830 0.91144 0.77265 0.81660 0.82247 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.83 13.05 55.50 0.72 -22.10 14 2 C 0.02 0.61 5.50 -17.45 -0.10 0.52 14 3 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 14 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 14 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 14 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 14 7 C -0.29 -7.76 9.68 -15.00 -0.15 -7.91 14 8 H 0.11 3.07 7.15 -52.48 -0.38 2.69 14 9 N -0.54 -13.39 5.23 -11.89 -0.06 -13.45 14 10 C 0.46 11.13 7.72 -12.41 -0.10 11.03 14 11 O -0.57 -15.36 13.72 5.28 0.07 -15.29 14 12 C -0.14 -2.80 5.89 -104.79 -0.62 -3.42 14 13 C 0.12 2.20 10.72 -17.12 -0.18 2.02 14 14 N -0.48 -7.89 10.34 -12.91 -0.13 -8.03 14 15 C 0.10 1.34 11.17 -17.48 -0.20 1.15 14 16 C -0.17 -2.43 9.92 -39.46 -0.39 -2.82 14 17 C 0.03 0.62 6.41 -38.72 -0.25 0.37 14 18 Cl -0.03 -0.46 26.25 -51.86 -1.36 -1.82 14 19 H 0.28 6.78 8.31 -40.82 -0.34 6.44 14 20 H 0.39 9.22 5.96 -40.82 -0.24 8.98 14 21 H 0.17 2.83 6.42 -52.48 -0.34 2.50 14 22 H 0.16 1.51 8.06 -52.49 -0.42 1.08 14 23 H 0.14 1.51 8.06 -52.49 -0.42 1.09 14 LS Contribution 230.43 15.07 3.47 3.47 Total: -1.00 -29.44 230.43 -5.22 -34.66 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -0.94 Total: 6.58 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.97 Total: 0.94 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.53 Total: -43.58 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.07 Total: -15.29 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.36 Total: -1.82 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.44 -5.22 -34.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088109413.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.035 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds