Wall clock time and date at job start Mon Mar 30 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31369 * 1 3 3 Si 1.86803 * 119.99771 * 2 1 4 4 H 1.48498 * 109.47018 * 239.99580 * 3 2 1 5 5 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47141 * 119.99534 * 3 2 1 7 7 C 1.39035 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36878 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.34784 * 120.00198 * 179.97438 * 9 7 2 11 11 O 1.21597 * 119.99617 * 359.97438 * 10 9 7 12 12 C 1.47653 * 120.00036 * 179.72752 * 10 9 7 13 13 C 1.39628 * 120.58123 * 359.97438 * 12 10 9 14 14 N 1.31640 * 120.56769 * 179.97438 * 13 12 10 15 15 C 1.32008 * 121.93241 * 0.02562 * 14 13 12 16 16 C 1.38229 * 121.11441 * 0.02562 * 15 14 13 17 17 C 1.38572 * 119.29950 * 359.70233 * 16 15 14 18 18 Cl 1.73603 * 120.87872 * 180.29824 * 17 16 15 19 19 H 0.97000 * 120.00524 * 0.02562 * 1 2 3 20 20 H 0.97005 * 119.99956 * 359.97438 * 9 7 2 21 21 H 1.08005 * 119.71357 * 359.97438 * 13 12 10 22 22 H 1.07996 * 119.44314 * 180.02562 * 15 14 13 23 23 H 1.07999 * 120.34442 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1014 1.6964 -1.2124 5 1 1.2826 2.7465 -0.0006 6 1 3.1013 1.6965 1.2125 7 6 2.0089 -1.2041 0.0005 8 1 3.0889 -1.2040 0.0010 9 7 1.3245 -2.3895 0.0005 10 6 1.9985 -3.5568 0.0005 11 8 3.2145 -3.5567 0.0001 12 6 1.2603 -4.8355 0.0066 13 6 -0.1359 -4.8497 0.0129 14 7 -0.7938 -5.9899 0.0179 15 6 -0.1724 -7.1546 0.0175 16 6 1.2079 -7.2277 0.0125 17 6 1.9490 -6.0568 0.0015 18 17 3.6844 -6.1009 -0.0129 19 1 -0.4851 0.8400 -0.0004 20 1 0.3545 -2.3896 0.0005 21 1 -0.6808 -3.9171 0.0138 22 1 -0.7522 -8.0656 0.0213 23 1 1.7035 -8.1873 0.0127 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088109413.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:01 Heat of formation + Delta-G solvation = -24.100816 kcal Electronic energy + Delta-G solvation = -12851.947721 eV Core-core repulsion = 10304.428873 eV Total energy + Delta-G solvation = -2547.518848 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.43156 -39.59955 -37.57714 -36.08585 -33.62459 -33.13881 -32.26504 -27.41069 -25.20916 -24.41057 -21.59545 -20.22295 -18.73518 -17.99404 -17.25790 -16.67536 -15.89609 -15.74814 -15.62619 -14.86087 -14.65898 -14.47355 -13.62742 -13.35679 -13.14041 -12.94271 -12.48291 -12.17630 -12.04684 -11.57980 -10.86610 -10.47738 -10.28916 -10.15270 -10.09158 -8.56397 -5.99792 -0.39006 -0.04164 1.04830 1.41866 1.42187 1.53241 2.04987 2.25270 2.72843 2.96654 3.25204 3.34172 3.66371 3.84917 4.03805 4.41670 4.52249 4.61200 4.91705 5.34373 5.45985 5.89170 6.47554 6.77660 7.01350 7.39722 7.97073 8.60334 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.008145 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.760016 B = 3436.702581 C = 4142.606611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.008 4.008 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.087 0.913 9 N -0.549 5.549 10 C 0.463 3.537 11 O -0.606 6.606 12 C -0.174 4.174 13 C 0.130 3.870 14 N -0.493 5.493 15 C 0.125 3.875 16 C -0.157 4.157 17 C 0.024 3.976 18 Cl -0.036 7.036 19 H 0.283 0.717 20 H 0.396 0.604 21 H 0.164 0.836 22 H 0.215 0.785 23 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -11.948 0.019 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.105 0.895 9 N -0.185 5.185 10 C 0.251 3.749 11 O -0.493 6.493 12 C -0.180 4.180 13 C -0.029 4.029 14 N -0.202 5.202 15 C -0.032 4.032 16 C -0.177 4.177 17 C -0.012 4.012 18 Cl -0.007 7.007 19 H 0.093 0.907 20 H 0.232 0.768 21 H 0.181 0.819 22 H 0.231 0.769 23 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.871 -11.725 0.021 11.874 hybrid contribution 1.015 1.030 -0.009 1.446 sum -0.856 -10.695 0.013 10.729 Atomic orbital electron populations 1.69632 1.07016 1.30066 1.48047 1.26170 0.96582 1.02677 0.95581 0.84903 0.77784 0.76048 0.79132 1.19514 1.19222 1.19503 1.19764 0.93185 0.83495 1.49683 0.89465 1.41880 1.09471 1.04649 1.62474 1.18025 0.87557 0.83846 0.85429 1.90650 1.13983 1.87234 1.57399 1.21055 0.95805 0.94119 1.07062 1.23036 0.88965 0.97774 0.93077 1.67717 1.41032 0.98671 1.12823 1.23709 0.91330 0.96865 0.91283 1.22482 0.95452 0.98001 1.01797 1.21695 0.86908 0.94255 0.98308 1.98398 1.07790 1.98575 1.95891 0.90709 0.76837 0.81936 0.76850 0.79726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.77 13.05 21.68 0.28 -47.48 14 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 14 3 Si 1.00 41.78 29.55 68.60 2.03 43.81 14 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 14 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 14 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 14 7 C -0.33 -18.61 9.68 84.10 0.81 -17.80 14 8 H 0.09 5.16 7.15 -2.91 -0.02 5.14 14 9 N -0.55 -28.57 5.23 -309.79 -1.62 -30.19 14 10 C 0.46 23.13 7.72 86.73 0.67 23.80 14 11 O -0.61 -33.58 13.72 -4.02 -0.06 -33.63 14 12 C -0.17 -6.93 5.89 -19.97 -0.12 -7.05 14 13 C 0.13 4.52 10.72 85.06 0.91 5.43 14 14 N -0.49 -14.51 10.34 -194.74 -2.01 -16.52 14 15 C 0.13 2.71 11.17 84.66 0.95 3.66 14 16 C -0.16 -3.67 9.92 22.35 0.22 -3.45 14 17 C 0.02 0.83 6.41 22.83 0.15 0.98 14 18 Cl -0.04 -1.29 26.25 -2.72 -0.07 -1.36 14 19 H 0.28 13.87 8.31 -92.71 -0.77 13.10 14 20 H 0.40 19.42 5.96 -92.70 -0.55 18.87 14 21 H 0.16 5.64 6.42 -2.91 -0.02 5.62 14 22 H 0.22 2.40 8.06 -2.91 -0.02 2.38 14 23 H 0.19 2.78 8.06 -2.91 -0.02 2.76 14 Total: -1.00 -65.97 230.43 3.32 -62.65 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.71 Total: 17.12 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 4.06 Total: 5.61 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -3.35 Total: -94.19 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.06 Total: -33.63 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -65.97 3.32 -62.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088109413.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.554 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds