Wall clock time and date at job start Mon Mar 30 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47066 * 2 1 4 4 N 1.46901 * 109.46830 * 239.99963 * 2 1 3 5 5 C 1.46895 * 110.99816 * 85.00098 * 4 2 1 6 6 C 1.50706 * 109.47182 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72677 * 6 5 4 9 9 N 1.31514 * 120.00481 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00365 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00213 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00116 * 10 8 6 14 14 C 1.53001 * 109.46848 * 120.00158 * 2 1 3 15 15 C 1.54238 * 108.89920 * 61.39368 * 14 2 1 16 16 C 1.50558 * 108.48507 * 159.17580 * 15 14 2 17 17 C 1.54062 * 112.41254 * 94.26893 * 16 15 14 18 18 C 1.54067 * 112.81552 * 318.27691 * 17 16 15 19 19 C 1.50465 * 112.49896 * 318.28637 * 18 17 16 20 20 C 1.45543 * 108.89706 * 298.60038 * 14 2 1 21 21 H 1.09000 * 109.47208 * 300.00289 * 1 2 3 22 22 H 1.09003 * 109.47118 * 59.99580 * 1 2 3 23 23 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 24 24 H 1.00899 * 111.00258 * 321.04329 * 4 2 1 25 25 H 1.09001 * 109.47613 * 60.00104 * 5 4 2 26 26 H 1.08998 * 109.47678 * 300.00000 * 5 4 2 27 27 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 28 28 H 1.09002 * 108.86817 * 179.97438 * 14 2 1 29 29 H 1.08995 * 109.62972 * 278.97724 * 15 14 2 30 30 H 1.09004 * 109.62389 * 39.55191 * 15 14 2 31 31 H 1.09001 * 108.92274 * 333.51257 * 16 15 14 32 32 H 1.09001 * 108.91166 * 215.01936 * 16 15 14 33 33 H 1.09006 * 108.81310 * 197.41812 * 17 16 15 34 34 H 1.08997 * 108.72809 * 79.07817 * 17 16 15 35 35 H 1.09000 * 108.87382 * 197.50613 * 18 17 16 36 36 H 1.09001 * 108.79776 * 79.01615 * 18 17 16 37 37 H 1.08996 * 109.63096 * 334.44557 * 19 18 17 38 38 H 1.09003 * 109.63522 * 213.86376 * 19 18 17 39 39 H 1.09000 * 108.89412 * 303.44678 * 20 14 2 40 40 H 1.09001 * 108.89458 * 61.93401 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3468 6 6 2.5884 -0.5215 -3.5558 7 1 2.8379 -1.5695 -3.4793 8 6 2.7269 0.1340 -4.7607 9 7 3.1680 -0.5155 -5.8158 10 14 2.2867 1.9444 -4.8950 11 1 3.4841 2.7688 -4.5922 12 1 1.8185 2.2391 -6.2732 13 1 1.2074 2.2646 -3.9266 14 6 2.0399 -0.7213 1.2492 15 6 1.5477 -2.1827 1.2182 16 6 2.4315 -3.0033 2.1195 17 6 1.8541 -3.1417 3.5411 18 6 1.2525 -1.8265 4.0721 19 6 2.1007 -0.6293 3.7385 20 6 1.5756 -0.0064 2.4289 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.4495 -1.4980 -1.4100 25 1 2.7588 1.0462 -2.1183 26 1 1.0870 0.6164 -2.5525 27 1 3.2650 -0.0544 -6.6636 28 1 3.1299 -0.7160 1.2391 29 1 0.5176 -2.2297 1.5712 30 1 1.6067 -2.5673 0.2000 31 1 3.4110 -2.5290 2.1813 32 1 2.5498 -3.9975 1.6885 33 1 2.6498 -3.4613 4.2141 34 1 1.0760 -3.9049 3.5300 35 1 1.1519 -1.8968 5.1552 36 1 0.2633 -1.6909 3.6347 37 1 3.1370 -0.9401 3.6063 38 1 2.0348 0.1022 4.5440 39 1 1.9129 1.0284 2.3700 40 1 0.4857 -0.0200 2.4436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088169131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:01 Heat of formation + Delta-G solvation = -29.301664 kcal Electronic energy + Delta-G solvation = -16311.673926 eV Core-core repulsion = 13931.978677 eV Total energy + Delta-G solvation = -2379.695249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.48556 -36.04830 -33.13604 -32.10942 -31.53373 -28.96891 -26.45358 -24.97792 -24.34423 -21.91679 -20.98671 -19.44010 -18.78695 -16.78010 -15.68780 -15.23667 -14.56018 -14.37510 -14.29198 -13.81874 -13.36457 -13.00904 -12.84681 -12.61205 -12.51431 -12.15152 -11.77500 -11.63003 -11.38779 -10.99248 -10.76436 -10.61921 -10.60387 -10.37416 -10.20637 -10.16269 -10.09012 -9.81868 -9.58751 -9.21394 -8.56730 -7.35755 -6.03601 -4.00977 3.30100 3.37049 3.39658 4.43962 4.65339 4.76998 4.90893 5.09320 5.20360 5.29063 5.30691 5.35471 5.43904 5.52090 5.60728 5.68331 5.78873 5.80961 5.87877 5.94640 6.11494 6.17016 6.19474 6.25157 6.28856 6.29940 6.35880 6.46140 6.50848 6.61339 6.75547 6.78643 6.89614 7.10139 7.65911 7.97694 8.41535 8.69750 9.04900 9.58963 11.09849 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047346 B = 0.005864 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.250280 B = 4773.844172 C = 5093.714429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.066 0.934 4 N -0.673 5.673 5 C 0.163 3.837 6 C -0.514 4.514 7 H 0.078 0.922 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.877 3.123 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C -0.073 4.073 15 C -0.107 4.107 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.114 4.114 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.335 0.665 25 H 0.020 0.980 26 H -0.017 1.017 27 H 0.263 0.737 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 -0.911 18.726 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.029 4.029 3 H 0.085 0.915 4 N -0.303 5.303 5 C 0.036 3.964 6 C -0.552 4.552 7 H 0.096 0.904 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.705 3.295 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.092 4.092 15 C -0.145 4.145 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.152 4.152 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.153 0.847 25 H 0.038 0.962 26 H 0.001 0.999 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.167 -0.805 18.672 19.149 hybrid contribution -1.142 1.117 -0.484 1.669 sum -5.309 0.312 18.188 18.950 Atomic orbital electron populations 1.22591 0.98510 1.01754 1.01313 1.21643 0.91822 0.97570 0.91903 0.91543 1.60586 1.55844 1.09899 1.03978 1.20012 0.94419 0.92825 0.89187 1.21087 1.43370 0.98887 0.91873 0.90360 1.24905 0.94843 0.97938 0.95673 1.69901 1.46811 1.36540 1.00840 0.86829 0.79274 0.86128 0.77310 1.20186 1.21271 1.19307 1.20044 1.00971 0.94803 0.93380 1.21349 0.98492 0.94693 0.99962 1.21338 0.99695 1.00117 0.94294 1.21920 0.99819 0.96947 0.96657 1.21323 0.99622 0.94787 0.99671 1.21309 1.00118 0.96831 0.97100 1.20617 1.00884 0.99288 0.94378 0.92829 0.92999 0.92543 0.84716 0.96229 0.99910 0.92709 0.91002 0.92541 0.90859 0.92082 0.92646 0.92836 0.92776 0.93013 0.92210 0.91649 0.92527 0.92678 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 8.52 37.16 0.32 -2.40 16 2 C 0.08 1.36 2.34 -67.71 -0.16 1.20 16 3 H 0.07 1.17 7.78 -51.93 -0.40 0.76 16 4 N -0.67 -13.86 5.75 -107.99 -0.62 -14.48 16 5 C 0.16 4.02 4.31 -4.98 -0.02 4.00 16 6 C -0.51 -14.89 9.87 -34.44 -0.34 -15.23 16 7 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 10 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 14 C -0.07 -1.02 1.72 -93.49 -0.16 -1.18 16 15 C -0.11 -1.41 3.96 -27.30 -0.11 -1.52 16 16 C -0.12 -1.38 5.32 -27.40 -0.15 -1.53 16 17 C -0.12 -1.17 5.85 -25.62 -0.15 -1.32 16 18 C -0.12 -1.14 5.32 -27.44 -0.15 -1.28 16 19 C -0.12 -1.20 5.61 -27.35 -0.15 -1.35 16 20 C -0.11 -1.34 4.17 -29.60 -0.12 -1.46 16 21 H 0.05 0.69 6.45 -51.93 -0.34 0.35 16 22 H 0.05 0.85 7.45 -51.93 -0.39 0.46 16 23 H 0.06 0.80 6.92 -51.93 -0.36 0.44 16 24 H 0.33 6.75 7.19 -39.29 -0.28 6.46 16 25 H 0.02 0.49 7.50 -51.93 -0.39 0.10 16 26 H -0.02 -0.41 6.47 -51.93 -0.34 -0.75 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.07 1.11 7.46 -51.93 -0.39 0.72 16 29 H 0.06 0.70 6.46 -51.93 -0.34 0.36 16 30 H 0.07 1.09 6.29 -51.93 -0.33 0.77 16 31 H 0.06 0.76 6.63 -51.93 -0.34 0.41 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.60 6.62 -51.93 -0.34 0.26 16 37 H 0.06 0.70 6.98 -51.93 -0.36 0.34 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.06 0.69 5.65 -51.93 -0.29 0.40 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -29.82 291.40 -8.42 -38.25 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.01 Total: 2.03 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -1.29 Total: -20.17 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.15 Total: -41.74 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.82 -8.42 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088169131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.947 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds