Wall clock time and date at job start Mon Mar 30 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47066 * 2 1 4 4 N 1.46901 * 109.46830 * 239.99963 * 2 1 3 5 5 C 1.46895 * 110.99816 * 85.00098 * 4 2 1 6 6 C 1.50706 * 109.47182 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72677 * 6 5 4 9 9 N 1.31514 * 120.00481 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99745 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47209 * 90.00365 * 10 8 6 12 12 H 1.48506 * 109.47294 * 210.00213 * 10 8 6 13 13 H 1.48501 * 109.47275 * 330.00116 * 10 8 6 14 14 C 1.53001 * 109.46848 * 120.00158 * 2 1 3 15 15 C 1.54238 * 108.89920 * 61.39368 * 14 2 1 16 16 C 1.50558 * 108.48507 * 159.17580 * 15 14 2 17 17 C 1.54062 * 112.41254 * 94.26893 * 16 15 14 18 18 C 1.54067 * 112.81552 * 318.27691 * 17 16 15 19 19 C 1.50465 * 112.49896 * 318.28637 * 18 17 16 20 20 C 1.45543 * 108.89706 * 298.60038 * 14 2 1 21 21 H 1.09000 * 109.47208 * 300.00289 * 1 2 3 22 22 H 1.09003 * 109.47118 * 59.99580 * 1 2 3 23 23 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 24 24 H 1.00899 * 111.00258 * 321.04329 * 4 2 1 25 25 H 1.09001 * 109.47613 * 60.00104 * 5 4 2 26 26 H 1.08998 * 109.47678 * 300.00000 * 5 4 2 27 27 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 28 28 H 1.09002 * 108.86817 * 179.97438 * 14 2 1 29 29 H 1.08995 * 109.62972 * 278.97724 * 15 14 2 30 30 H 1.09004 * 109.62389 * 39.55191 * 15 14 2 31 31 H 1.09001 * 108.92274 * 333.51257 * 16 15 14 32 32 H 1.09001 * 108.91166 * 215.01936 * 16 15 14 33 33 H 1.09006 * 108.81310 * 197.41812 * 17 16 15 34 34 H 1.08997 * 108.72809 * 79.07817 * 17 16 15 35 35 H 1.09000 * 108.87382 * 197.50613 * 18 17 16 36 36 H 1.09001 * 108.79776 * 79.01615 * 18 17 16 37 37 H 1.08996 * 109.63096 * 334.44557 * 19 18 17 38 38 H 1.09003 * 109.63522 * 213.86376 * 19 18 17 39 39 H 1.09000 * 108.89412 * 303.44678 * 20 14 2 40 40 H 1.09001 * 108.89458 * 61.93401 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3468 6 6 2.5884 -0.5215 -3.5558 7 1 2.8379 -1.5695 -3.4793 8 6 2.7269 0.1340 -4.7607 9 7 3.1680 -0.5155 -5.8158 10 14 2.2867 1.9444 -4.8950 11 1 3.4841 2.7688 -4.5922 12 1 1.8185 2.2391 -6.2732 13 1 1.2074 2.2646 -3.9266 14 6 2.0399 -0.7213 1.2492 15 6 1.5477 -2.1827 1.2182 16 6 2.4315 -3.0033 2.1195 17 6 1.8541 -3.1417 3.5411 18 6 1.2525 -1.8265 4.0721 19 6 2.1007 -0.6293 3.7385 20 6 1.5756 -0.0064 2.4289 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.4495 -1.4980 -1.4100 25 1 2.7588 1.0462 -2.1183 26 1 1.0870 0.6164 -2.5525 27 1 3.2650 -0.0544 -6.6636 28 1 3.1299 -0.7160 1.2391 29 1 0.5176 -2.2297 1.5712 30 1 1.6067 -2.5673 0.2000 31 1 3.4110 -2.5290 2.1813 32 1 2.5498 -3.9975 1.6885 33 1 2.6498 -3.4613 4.2141 34 1 1.0760 -3.9049 3.5300 35 1 1.1519 -1.8968 5.1552 36 1 0.2633 -1.6909 3.6347 37 1 3.1370 -0.9401 3.6063 38 1 2.0348 0.1022 4.5440 39 1 1.9129 1.0284 2.3700 40 1 0.4857 -0.0200 2.4436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088169131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:01 Heat of formation + Delta-G solvation = -47.558574 kcal Electronic energy + Delta-G solvation = -16312.465605 eV Core-core repulsion = 13931.978677 eV Total energy + Delta-G solvation = -2380.486928 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57727 -37.41099 -35.00413 -33.44162 -32.79134 -30.38055 -28.26022 -25.98282 -25.39193 -23.47208 -22.57729 -20.43561 -19.87274 -18.90090 -17.03839 -16.42296 -15.99611 -15.79235 -15.54202 -15.31324 -14.76383 -14.36879 -14.12123 -13.81384 -13.79114 -13.50472 -13.30344 -12.86422 -12.62757 -12.53084 -12.26890 -12.15999 -11.92563 -11.62345 -11.42794 -11.27942 -11.21304 -11.09271 -11.02160 -10.81739 -10.75360 -9.02522 -8.31058 -6.35116 1.33154 1.34474 1.45638 2.32713 3.03024 3.47396 3.76728 3.90142 4.04063 4.21015 4.29269 4.38229 4.44304 4.49377 4.55025 4.58864 4.73190 4.77619 4.79733 4.90827 4.96169 5.03233 5.11303 5.16253 5.23158 5.26805 5.37475 5.40154 5.43941 5.45865 5.48991 5.52977 5.62990 5.71103 5.72615 6.01375 6.59683 6.68932 6.81433 7.30182 8.85854 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047346 B = 0.005864 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.250280 B = 4773.844172 C = 5093.714429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.078 3.922 3 H 0.058 0.942 4 N -0.682 5.682 5 C 0.176 3.824 6 C -0.527 4.527 7 H 0.036 0.964 8 C 0.008 3.992 9 N -0.948 5.948 10 Si 0.951 3.049 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.252 1.252 14 C -0.062 4.062 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.113 4.113 21 H 0.080 0.920 22 H 0.034 0.966 23 H 0.062 0.938 24 H 0.335 0.665 25 H 0.018 0.982 26 H -0.015 1.015 27 H 0.267 0.733 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 0.439 20.871 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.032 4.032 3 H 0.076 0.924 4 N -0.312 5.312 5 C 0.047 3.953 6 C -0.565 4.565 7 H 0.054 0.946 8 C -0.189 4.189 9 N -0.589 5.589 10 Si 0.774 3.226 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.176 1.176 14 C -0.081 4.081 15 C -0.141 4.141 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.150 4.150 21 H 0.099 0.901 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.153 0.847 25 H 0.036 0.964 26 H 0.003 0.997 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.418 0.536 20.847 21.547 hybrid contribution -0.707 0.590 -1.143 1.467 sum -6.124 1.126 19.704 20.665 Atomic orbital electron populations 1.22494 0.96688 1.02383 1.01802 1.21790 0.93351 0.97041 0.91058 0.92350 1.60508 1.57018 1.09685 1.03993 1.19734 0.93913 0.92724 0.88892 1.21365 1.43535 0.97533 0.94093 0.94556 1.25873 0.94556 1.03435 0.95066 1.70053 1.48187 1.38953 1.01659 0.85661 0.79673 0.79359 0.77887 1.19123 1.20490 1.17619 1.19955 0.99700 0.95276 0.93131 1.21294 0.99538 0.94243 0.99018 1.21310 0.99089 0.99523 0.95486 1.21894 1.00267 0.97637 0.95224 1.21325 0.99286 0.94024 1.00690 1.21286 0.99693 0.97442 0.96581 1.20586 1.01430 0.99014 0.93992 0.90126 0.94641 0.91869 0.84674 0.96378 0.99697 0.92358 0.92972 0.91225 0.93214 0.93044 0.92931 0.92047 0.92051 0.91421 0.92143 0.92415 0.90981 0.92655 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.86 8.52 71.98 0.61 -4.25 16 2 C 0.08 2.51 2.34 44.92 0.11 2.61 16 3 H 0.06 1.98 7.78 -2.39 -0.02 1.96 16 4 N -0.68 -28.37 5.75 -495.58 -2.85 -31.22 16 5 C 0.18 8.67 4.31 85.56 0.37 9.04 16 6 C -0.53 -31.38 9.87 25.60 0.25 -31.13 16 7 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 8 C 0.01 0.48 5.47 84.65 0.46 0.94 16 9 N -0.95 -60.29 13.96 21.45 0.30 -60.00 16 10 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 14 C -0.06 -1.65 1.72 -12.65 -0.02 -1.67 16 15 C -0.10 -2.62 3.96 30.22 0.12 -2.50 16 16 C -0.12 -2.64 5.32 30.16 0.16 -2.48 16 17 C -0.11 -2.00 5.85 31.31 0.18 -1.82 16 18 C -0.12 -1.89 5.32 30.13 0.16 -1.73 16 19 C -0.11 -2.01 5.61 30.19 0.17 -1.84 16 20 C -0.11 -2.37 4.17 28.74 0.12 -2.25 16 21 H 0.08 1.81 6.45 -2.39 -0.02 1.79 16 22 H 0.03 1.10 7.45 -2.39 -0.02 1.08 16 23 H 0.06 1.66 6.92 -2.39 -0.02 1.65 16 24 H 0.33 13.82 7.19 -89.69 -0.65 13.18 16 25 H 0.02 0.90 7.50 -2.39 -0.02 0.88 16 26 H -0.01 -0.71 6.47 -2.39 -0.02 -0.72 16 27 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.05 1.60 7.46 -2.39 -0.02 1.58 16 29 H 0.07 1.57 6.46 -2.39 -0.02 1.56 16 30 H 0.05 1.49 6.29 -2.39 -0.01 1.48 16 31 H 0.05 1.25 6.63 -2.39 -0.02 1.24 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.00 6.62 -2.39 -0.02 0.98 16 37 H 0.06 1.13 6.98 -2.39 -0.02 1.12 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.07 1.37 5.65 -2.39 -0.01 1.36 16 Total: -1.00 -65.00 291.40 2.33 -62.67 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.30 Total: 18.70 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 2.69 Total: -37.08 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -2.55 Total: -91.21 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -65.00 2.33 -62.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088169131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.116 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds