Wall clock time and date at job start Mon Mar 30 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47305 * 2 1 4 4 C 1.53002 * 109.47021 * 120.00308 * 2 1 3 5 5 C 1.53121 * 109.52115 * 179.97438 * 4 2 1 6 6 C 1.53036 * 109.28008 * 182.37708 * 5 4 2 7 7 N 1.46855 * 109.52227 * 59.17609 * 6 5 4 8 8 C 1.46896 * 110.99795 * 174.16327 * 7 6 5 9 9 H 1.08998 * 109.47301 * 55.00042 * 8 7 6 10 10 C 1.52995 * 109.47197 * 295.00072 * 8 7 6 11 11 C 1.50703 * 109.46945 * 175.00242 * 8 7 6 12 12 H 1.07989 * 120.00172 * 31.07133 * 11 8 7 13 13 C 1.37877 * 119.99744 * 211.07497 * 11 8 7 14 14 N 1.31516 * 120.00128 * 352.66945 * 13 11 8 15 15 Si 1.86802 * 120.00065 * 172.67076 * 13 11 8 16 16 H 1.48494 * 109.46726 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47159 * 119.99727 * 15 13 11 18 18 H 1.48494 * 109.47197 * 240.00023 * 15 13 11 19 19 C 1.46842 * 111.19711 * 298.25881 * 7 6 5 20 20 C 1.53046 * 109.52459 * 61.74709 * 19 7 6 21 21 H 1.08997 * 109.46603 * 300.00232 * 1 2 3 22 22 H 1.08999 * 109.46783 * 59.99424 * 1 2 3 23 23 H 1.09001 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46805 * 239.99726 * 2 1 3 25 25 H 1.08997 * 109.47480 * 60.00304 * 3 2 1 26 26 H 1.09002 * 109.47238 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47157 * 300.00156 * 3 2 1 28 28 H 1.08994 * 109.52171 * 300.12045 * 4 2 1 29 29 H 1.09000 * 109.50577 * 62.43356 * 5 4 2 30 30 H 1.09011 * 109.50032 * 302.31743 * 5 4 2 31 31 H 1.08997 * 109.45861 * 299.16698 * 6 5 4 32 32 H 1.08994 * 109.45629 * 179.18519 * 6 5 4 33 33 H 1.09001 * 109.47237 * 306.69244 * 10 8 7 34 34 H 1.09007 * 109.47558 * 66.68927 * 10 8 7 35 35 H 1.09000 * 109.47655 * 186.69284 * 10 8 7 36 36 H 0.97006 * 119.99865 * 354.52748 * 14 13 11 37 37 H 1.08999 * 109.46209 * 181.75740 * 19 7 6 38 38 H 1.08993 * 109.46616 * 301.72732 * 19 7 6 39 39 H 1.08998 * 109.50425 * 180.88121 * 20 19 7 40 40 H 1.08998 * 109.50058 * 60.75222 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5712 -0.7226 1.2501 6 6 4.0752 -1.4964 2.4704 7 7 3.5667 -2.8733 2.4227 8 6 4.1417 -3.6845 3.5040 9 1 3.9527 -3.1998 4.4618 10 6 5.6505 -3.8222 3.2912 11 6 3.5068 -5.0512 3.4987 12 1 3.1702 -5.4866 2.5695 13 6 3.3557 -5.7457 4.6801 14 7 3.8923 -5.2831 5.7881 15 14 2.3887 -7.3437 4.7070 16 1 1.8908 -7.6440 3.3407 17 1 3.2692 -8.4474 5.1672 18 1 1.2369 -7.2098 5.6347 19 6 2.0993 -2.8992 2.4687 20 6 1.5363 -2.1673 1.2482 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6754 -0.2095 2.1397 29 1 3.9360 0.3037 1.2938 30 1 3.9352 -1.2003 0.3404 31 1 3.7222 -1.0102 3.3798 32 1 5.1651 -1.5114 2.4660 33 1 5.8430 -4.1969 2.2858 34 1 6.1251 -2.8485 3.4130 35 1 6.0586 -4.5194 4.0230 36 1 4.4602 -4.4972 5.7606 37 1 1.7540 -3.9330 2.4633 38 1 1.7556 -2.4064 3.3781 39 1 0.4471 -2.1732 1.2908 40 1 1.8684 -2.6678 0.3387 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108304213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:49 Heat of formation + Delta-G solvation = -30.885059 kcal Electronic energy + Delta-G solvation = -16577.062163 eV Core-core repulsion = 14197.298253 eV Total energy + Delta-G solvation = -2379.763910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.94054 -36.16431 -33.35930 -31.08001 -30.43467 -28.22072 -27.10969 -24.85380 -23.66474 -21.97796 -20.56620 -19.64510 -19.19479 -16.70183 -15.61681 -14.49721 -14.24876 -14.01501 -13.72471 -13.59666 -13.55995 -13.06976 -12.59143 -12.35115 -12.08271 -11.75919 -11.47017 -11.22425 -11.07231 -10.98457 -10.83058 -10.67921 -10.55899 -10.47269 -10.29256 -10.11314 -10.00202 -9.61045 -9.41853 -8.55584 -8.25338 -7.16045 -6.34270 -4.04585 3.44730 3.47402 3.61815 4.52519 4.82738 4.96237 4.96855 5.01647 5.34869 5.44581 5.58094 5.61925 5.64664 5.76939 5.82282 5.86768 5.91696 6.04759 6.13584 6.17951 6.21384 6.24395 6.37281 6.39315 6.47371 6.51921 6.59322 6.67759 6.75972 6.82964 6.91157 7.01081 7.19109 7.51364 7.96509 8.14135 8.48293 8.64671 8.90500 9.67327 11.02649 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038218 B = 0.007042 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.466697 B = 3975.203326 C = 4498.187707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.082 4.082 5 C -0.108 4.108 6 C 0.051 3.949 7 N -0.530 5.530 8 C 0.191 3.809 9 H 0.003 0.997 10 C -0.127 4.127 11 C -0.582 4.582 12 H 0.057 0.943 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 1.070 2.930 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.287 1.287 19 C 0.070 3.930 20 C -0.112 4.112 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.016 0.984 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.015 0.985 35 H 0.047 0.953 36 H 0.270 0.730 37 H 0.089 0.911 38 H 0.014 0.986 39 H 0.057 0.943 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 10.020 -9.552 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.100 4.100 5 C -0.145 4.145 6 C -0.078 4.078 7 N -0.255 5.255 8 C 0.085 3.915 9 H 0.020 0.980 10 C -0.185 4.185 11 C -0.621 4.621 12 H 0.075 0.925 13 C -0.185 4.185 14 N -0.551 5.551 15 Si 0.898 3.102 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.214 1.214 19 C -0.058 4.058 20 C -0.150 4.150 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.494 8.626 -8.983 13.241 hybrid contribution 0.427 1.606 -0.149 1.668 sum -4.067 10.232 -9.133 14.305 Atomic orbital electron populations 1.21881 0.95672 1.01895 1.01055 1.21146 0.95405 0.95798 0.98615 1.21883 1.01228 0.96276 1.01092 1.21239 0.95658 0.96199 0.96926 1.21656 0.94956 0.98740 0.99186 1.22058 0.99530 0.90537 0.95628 1.62035 1.06190 1.08275 1.49042 1.19437 0.91295 0.93299 0.87444 0.97972 1.21879 0.98191 0.97752 1.00728 1.21895 1.42865 1.01230 0.96065 0.92492 1.25809 0.97419 1.03107 0.92187 1.70726 1.30516 1.24694 1.29120 0.83545 0.76211 0.75172 0.75235 1.21386 1.21497 1.21371 1.21863 0.88503 1.01181 0.94302 1.21744 0.98940 0.94480 0.99804 0.93006 0.93303 0.92241 0.91400 0.93013 0.92434 0.93285 0.92104 0.92523 0.91661 0.96582 0.91589 0.93622 0.96566 0.93357 0.91932 0.89251 0.96816 0.92392 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.85 37.16 0.33 -1.29 16 2 C -0.09 -1.09 2.51 -90.62 -0.23 -1.32 16 3 C -0.15 -1.56 8.84 37.15 0.33 -1.23 16 4 C -0.08 -1.19 1.84 -90.49 -0.17 -1.35 16 5 C -0.11 -1.65 4.95 -26.65 -0.13 -1.78 16 6 C 0.05 0.97 5.29 -3.83 -0.02 0.95 16 7 N -0.53 -11.71 4.52 -228.09 -1.03 -12.74 16 8 C 0.19 4.88 1.73 -68.87 -0.12 4.76 16 9 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 10 C -0.13 -3.00 8.83 37.15 0.33 -2.67 16 11 C -0.58 -16.13 6.76 -34.44 -0.23 -16.37 16 12 H 0.06 1.61 7.48 -52.49 -0.39 1.22 16 13 C 0.02 0.54 5.45 -17.82 -0.10 0.44 16 14 N -0.91 -27.51 13.55 55.43 0.75 -26.76 16 15 Si 1.07 25.22 29.91 -169.99 -5.08 20.13 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.07 1.45 5.16 -3.83 -0.02 1.43 16 20 C -0.11 -1.84 4.96 -26.64 -0.13 -1.97 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.67 6.50 -51.93 -0.34 0.33 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.61 6.49 -51.93 -0.34 0.27 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 30 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 1.24 6.32 -51.93 -0.33 0.91 16 33 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.33 6.73 -51.92 -0.35 -0.02 16 35 H 0.05 1.19 8.00 -51.93 -0.42 0.78 16 36 H 0.27 8.12 6.67 -40.82 -0.27 7.85 16 37 H 0.09 2.05 6.40 -51.93 -0.33 1.72 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -29.02 298.62 -8.28 -37.29 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.25 Total: -2.03 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.16 Total: -20.40 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.28 Total: -39.50 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.02 -8.28 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108304213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.408 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds