Wall clock time and date at job start Mon Mar 30 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47305 * 2 1 4 4 C 1.53002 * 109.47021 * 120.00308 * 2 1 3 5 5 C 1.53121 * 109.52115 * 179.97438 * 4 2 1 6 6 C 1.53036 * 109.28008 * 182.37708 * 5 4 2 7 7 N 1.46855 * 109.52227 * 59.17609 * 6 5 4 8 8 C 1.46896 * 110.99795 * 174.16327 * 7 6 5 9 9 H 1.08998 * 109.47301 * 55.00042 * 8 7 6 10 10 C 1.52995 * 109.47197 * 295.00072 * 8 7 6 11 11 C 1.50703 * 109.46945 * 175.00242 * 8 7 6 12 12 H 1.07989 * 120.00172 * 31.07133 * 11 8 7 13 13 C 1.37877 * 119.99744 * 211.07497 * 11 8 7 14 14 N 1.31516 * 120.00128 * 352.66945 * 13 11 8 15 15 Si 1.86802 * 120.00065 * 172.67076 * 13 11 8 16 16 H 1.48494 * 109.46726 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47159 * 119.99727 * 15 13 11 18 18 H 1.48494 * 109.47197 * 240.00023 * 15 13 11 19 19 C 1.46842 * 111.19711 * 298.25881 * 7 6 5 20 20 C 1.53046 * 109.52459 * 61.74709 * 19 7 6 21 21 H 1.08997 * 109.46603 * 300.00232 * 1 2 3 22 22 H 1.08999 * 109.46783 * 59.99424 * 1 2 3 23 23 H 1.09001 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46805 * 239.99726 * 2 1 3 25 25 H 1.08997 * 109.47480 * 60.00304 * 3 2 1 26 26 H 1.09002 * 109.47238 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47157 * 300.00156 * 3 2 1 28 28 H 1.08994 * 109.52171 * 300.12045 * 4 2 1 29 29 H 1.09000 * 109.50577 * 62.43356 * 5 4 2 30 30 H 1.09011 * 109.50032 * 302.31743 * 5 4 2 31 31 H 1.08997 * 109.45861 * 299.16698 * 6 5 4 32 32 H 1.08994 * 109.45629 * 179.18519 * 6 5 4 33 33 H 1.09001 * 109.47237 * 306.69244 * 10 8 7 34 34 H 1.09007 * 109.47558 * 66.68927 * 10 8 7 35 35 H 1.09000 * 109.47655 * 186.69284 * 10 8 7 36 36 H 0.97006 * 119.99865 * 354.52748 * 14 13 11 37 37 H 1.08999 * 109.46209 * 181.75740 * 19 7 6 38 38 H 1.08993 * 109.46616 * 301.72732 * 19 7 6 39 39 H 1.08998 * 109.50425 * 180.88121 * 20 19 7 40 40 H 1.08998 * 109.50058 * 60.75222 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5712 -0.7226 1.2501 6 6 4.0752 -1.4964 2.4704 7 7 3.5667 -2.8733 2.4227 8 6 4.1417 -3.6845 3.5040 9 1 3.9527 -3.1998 4.4618 10 6 5.6505 -3.8222 3.2912 11 6 3.5068 -5.0512 3.4987 12 1 3.1702 -5.4866 2.5695 13 6 3.3557 -5.7457 4.6801 14 7 3.8923 -5.2831 5.7881 15 14 2.3887 -7.3437 4.7070 16 1 1.8908 -7.6440 3.3407 17 1 3.2692 -8.4474 5.1672 18 1 1.2369 -7.2098 5.6347 19 6 2.0993 -2.8992 2.4687 20 6 1.5363 -2.1673 1.2482 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6754 -0.2095 2.1397 29 1 3.9360 0.3037 1.2938 30 1 3.9352 -1.2003 0.3404 31 1 3.7222 -1.0102 3.3798 32 1 5.1651 -1.5114 2.4660 33 1 5.8430 -4.1969 2.2858 34 1 6.1251 -2.8485 3.4130 35 1 6.0586 -4.5194 4.0230 36 1 4.4602 -4.4972 5.7606 37 1 1.7540 -3.9330 2.4633 38 1 1.7556 -2.4064 3.3781 39 1 0.4471 -2.1732 1.2908 40 1 1.8684 -2.6678 0.3387 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108304213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:49 Heat of formation + Delta-G solvation = -47.649339 kcal Electronic energy + Delta-G solvation = -16577.789117 eV Core-core repulsion = 14197.298253 eV Total energy + Delta-G solvation = -2380.490864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39188 -37.66306 -35.16470 -32.77047 -31.89888 -29.90384 -28.05249 -26.88807 -25.15577 -23.50340 -22.28802 -21.00567 -20.53339 -18.78536 -17.26241 -15.91110 -15.70979 -15.60703 -15.48227 -14.93870 -14.82718 -14.57548 -14.10668 -13.54354 -13.35085 -13.30037 -13.00769 -12.98545 -12.63086 -12.56412 -12.21072 -12.18213 -12.08590 -11.97116 -11.92525 -11.69481 -11.34035 -10.97797 -10.82840 -10.66623 -10.35234 -9.02842 -8.61212 -6.31949 1.51808 1.59959 1.77206 2.55254 3.10242 3.33208 3.80187 3.84342 3.92002 4.25685 4.35435 4.37554 4.46822 4.53264 4.61548 4.65143 4.67765 4.75926 4.80127 4.83636 4.88084 5.01979 5.06465 5.08118 5.10956 5.13810 5.15329 5.22365 5.28158 5.38629 5.40684 5.52308 5.58203 5.64647 5.95675 6.05242 6.48710 6.52184 6.78219 7.47711 8.75347 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038218 B = 0.007042 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.466697 B = 3975.203326 C = 4498.187707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.078 4.078 5 C -0.099 4.099 6 C 0.048 3.952 7 N -0.533 5.533 8 C 0.190 3.810 9 H -0.034 1.034 10 C -0.115 4.115 11 C -0.584 4.584 12 H 0.048 0.952 13 C -0.031 4.031 14 N -0.940 5.940 15 Si 1.115 2.885 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.070 3.930 20 C -0.101 4.101 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.027 0.973 36 H 0.256 0.744 37 H 0.061 0.939 38 H -0.006 1.006 39 H 0.075 0.925 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.753 10.979 -11.471 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.203 4.203 4 C -0.097 4.097 5 C -0.136 4.136 6 C -0.080 4.080 7 N -0.258 5.258 8 C 0.083 3.917 9 H -0.017 1.017 10 C -0.173 4.173 11 C -0.623 4.623 12 H 0.066 0.934 13 C -0.229 4.229 14 N -0.578 5.578 15 Si 0.938 3.062 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.058 4.058 20 C -0.139 4.139 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.012 0.988 39 H 0.094 0.906 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.175 9.608 -10.926 15.443 hybrid contribution 0.653 1.364 0.434 1.573 sum -4.522 10.972 -10.492 15.840 Atomic orbital electron populations 1.21879 0.94837 1.01857 1.01900 1.21084 0.96084 0.96374 0.96824 1.21867 1.01304 0.95215 1.01912 1.21210 0.95090 0.94990 0.98367 1.21624 0.95479 0.99482 0.97053 1.22191 0.99715 0.88971 0.97125 1.62033 1.06805 1.10003 1.46945 1.19343 0.92630 0.92755 0.86968 1.01656 1.21693 0.96845 0.98584 1.00207 1.22102 1.42374 1.02181 0.95632 0.93375 1.27199 0.97827 1.05966 0.91873 1.70850 1.31934 1.24978 1.30028 0.82960 0.75279 0.71741 0.76256 1.19561 1.20639 1.20682 1.21860 0.88020 1.00057 0.95846 1.21664 0.99829 0.95253 0.97126 0.93055 0.91631 0.92735 0.91162 0.93018 0.92303 0.91719 0.92751 0.89878 0.91428 0.97786 0.91358 0.93110 0.94199 0.95358 0.93367 0.92008 0.98805 0.90641 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.85 71.98 0.64 -2.14 16 2 C -0.09 -1.77 2.51 -10.79 -0.03 -1.79 16 3 C -0.15 -2.57 8.84 71.98 0.64 -1.93 16 4 C -0.08 -2.11 1.84 -10.71 -0.02 -2.12 16 5 C -0.10 -2.81 4.95 30.65 0.15 -2.66 16 6 C 0.05 1.79 5.29 86.32 0.46 2.25 16 7 N -0.53 -23.72 4.52 -875.53 -3.95 -27.68 16 8 C 0.19 9.96 1.73 44.17 0.08 10.04 16 9 H -0.03 -2.02 6.86 -2.39 -0.02 -2.03 16 10 C -0.12 -5.47 8.83 71.98 0.64 -4.84 16 11 C -0.58 -33.16 6.76 25.60 0.17 -32.99 16 12 H 0.05 2.77 7.48 -2.92 -0.02 2.75 16 13 C -0.03 -1.77 5.45 84.65 0.46 -1.31 16 14 N -0.94 -58.18 13.55 21.45 0.29 -57.89 16 15 Si 1.12 51.03 29.91 68.60 2.05 53.08 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 C 0.07 2.99 5.16 86.33 0.45 3.43 16 20 C -0.10 -3.19 4.96 30.65 0.15 -3.04 16 21 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.05 1.07 6.50 -2.39 -0.02 1.06 16 24 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.02 6.49 -2.39 -0.02 1.01 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.97 6.57 -2.39 -0.02 1.95 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 32 H 0.07 2.48 6.32 -2.39 -0.02 2.47 16 33 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.04 1.66 6.73 -2.38 -0.02 1.65 16 35 H 0.03 1.41 8.00 -2.39 -0.02 1.40 16 36 H 0.26 16.12 6.67 -92.70 -0.62 15.50 16 37 H 0.06 2.92 6.40 -2.39 -0.02 2.90 16 38 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.08 2.12 6.58 -2.39 -0.02 2.10 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -63.60 298.62 3.29 -60.31 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.12 Total: 9.28 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 3.78 Total: -37.11 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -3.66 Total: -85.57 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -63.60 3.29 -60.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108304213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.661 kcal (2) G-P(sol) polarization free energy of solvation -63.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds