Wall clock time and date at job start Mon Mar 30 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46792 * 2 1 4 4 C 1.50701 * 109.47278 * 239.99905 * 2 1 3 5 5 H 1.07994 * 119.99952 * 239.99793 * 4 2 1 6 6 C 1.37876 * 120.00209 * 59.99746 * 4 2 1 7 7 N 1.31519 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00261 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46876 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46953 * 119.99813 * 8 6 4 11 11 H 1.48497 * 109.47118 * 240.00074 * 8 6 4 12 12 N 1.46899 * 109.47088 * 119.99672 * 2 1 3 13 13 C 1.47439 * 111.00210 * 55.84520 * 12 2 1 14 14 C 1.54316 * 107.23664 * 236.74393 * 13 12 2 15 15 C 1.55141 * 103.01475 * 337.71368 * 14 13 12 16 16 H 1.09002 * 110.99138 * 277.56012 * 15 14 13 17 17 C 1.53002 * 110.99095 * 153.74522 * 15 14 13 18 18 C 1.53004 * 109.47080 * 308.38891 * 17 15 14 19 19 C 1.53008 * 109.46810 * 68.38851 * 17 15 14 20 20 C 1.53002 * 109.47372 * 188.38904 * 17 15 14 21 21 C 1.47842 * 111.00026 * 295.00049 * 12 2 1 22 22 H 1.08995 * 109.47247 * 300.00347 * 1 2 3 23 23 H 1.09001 * 109.47292 * 60.00418 * 1 2 3 24 24 H 1.09007 * 109.47316 * 180.02562 * 1 2 3 25 25 H 0.96993 * 120.00299 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.88395 * 356.14947 * 13 12 2 27 27 H 1.09003 * 109.88706 * 117.33442 * 13 12 2 28 28 H 1.08996 * 110.70593 * 219.33407 * 14 13 12 29 29 H 1.08999 * 110.85878 * 96.16136 * 14 13 12 30 30 H 1.09000 * 109.46864 * 66.40812 * 18 17 15 31 31 H 1.09003 * 109.46898 * 186.40035 * 18 17 15 32 32 H 1.08996 * 109.46917 * 306.40711 * 18 17 15 33 33 H 1.09001 * 109.46921 * 60.00157 * 19 17 15 34 34 H 1.09005 * 109.46658 * 179.97438 * 19 17 15 35 35 H 1.08994 * 109.46770 * 300.00019 * 19 17 15 36 36 H 1.08997 * 109.47288 * 59.99899 * 20 17 15 37 37 H 1.08997 * 109.47197 * 180.02562 * 20 17 15 38 38 H 1.09001 * 109.46710 * 300.00103 * 20 17 15 39 39 H 1.09001 * 110.37491 * 265.19409 * 21 12 2 40 40 H 1.09000 * 110.37665 * 27.42206 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1660 -1.5869 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 7 2.0196 -0.6924 1.1995 13 6 1.4672 -2.0567 1.2846 14 6 0.7391 -2.1715 2.6403 15 6 1.4036 -1.0559 3.4893 16 1 2.3452 -1.3996 3.9175 17 6 0.4550 -0.5610 4.5830 18 6 -0.8934 -0.1932 3.9605 19 6 0.2528 -1.6666 5.6213 20 6 1.0569 0.6715 5.2609 21 6 1.6463 0.0440 2.4259 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7088 1.1612 -3.4844 26 1 0.7623 -2.2228 0.4699 27 1 2.2744 -2.7875 1.2341 28 1 0.9105 -3.1503 3.0881 29 1 -0.3283 -1.9836 2.5247 30 1 -1.3744 -1.0932 3.5776 31 1 -1.5301 0.2649 4.7174 32 1 -0.7363 0.5107 3.1433 33 1 1.2135 -1.9286 6.0647 34 1 -0.4226 -1.3138 6.4007 35 1 -0.1760 -2.5445 5.1383 36 1 1.2010 1.4590 4.5213 37 1 0.3814 1.0237 6.0404 38 1 2.0176 0.4093 5.7044 39 1 2.4593 0.6999 2.7370 40 1 0.7366 0.6211 2.2599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108304220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:26 Heat of formation + Delta-G solvation = -10.174040 kcal Electronic energy + Delta-G solvation = -16867.816156 eV Core-core repulsion = 14488.950342 eV Total energy + Delta-G solvation = -2378.865813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.42545 -36.21489 -33.08600 -30.62321 -28.53197 -27.38209 -26.84188 -26.77312 -25.12252 -21.89476 -21.21539 -18.90477 -17.99812 -15.96247 -15.76403 -15.05476 -14.42892 -13.95217 -13.89139 -13.59608 -13.21088 -12.63737 -12.40646 -12.12203 -11.78692 -11.59736 -11.45059 -11.40367 -11.14265 -11.01484 -10.88045 -10.67548 -10.40600 -10.35395 -10.09407 -10.02633 -9.99843 -9.74665 -9.59862 -8.79062 -8.34336 -7.01876 -5.96884 -3.99935 3.32360 3.40115 3.45357 4.45467 4.82622 4.88277 4.97800 5.31320 5.34691 5.46024 5.46524 5.66470 5.73523 5.74721 5.80005 5.87625 5.97328 6.02896 6.07181 6.18617 6.22088 6.29855 6.40611 6.45075 6.49527 6.62428 6.66597 6.75226 6.86404 6.93322 6.98618 7.20347 7.49524 7.77645 7.94434 8.19077 8.46793 8.67162 9.07563 9.65214 11.10405 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.051990 B = 0.006844 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.434374 B = 4090.047026 C = 4242.762097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.205 3.795 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.525 5.525 13 C 0.050 3.950 14 C -0.141 4.141 15 C -0.085 4.085 16 H 0.074 0.926 17 C -0.059 4.059 18 C -0.147 4.147 19 C -0.138 4.138 20 C -0.140 4.140 21 C 0.041 3.959 22 H 0.009 0.991 23 H 0.086 0.914 24 H 0.030 0.970 25 H 0.259 0.741 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -2.891 13.341 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.098 3.902 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.248 5.248 13 C -0.078 4.078 14 C -0.179 4.179 15 C -0.104 4.104 16 H 0.092 0.908 17 C -0.060 4.060 18 C -0.204 4.204 19 C -0.195 4.195 20 C -0.198 4.198 21 C -0.087 4.087 22 H 0.028 0.972 23 H 0.105 0.895 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.087 -2.798 13.134 13.589 hybrid contribution -0.609 -0.341 -0.880 1.124 sum -2.696 -3.139 12.253 12.933 Atomic orbital electron populations 1.22429 1.00896 0.99234 1.00373 1.19415 0.89715 0.94581 0.86506 0.94573 1.21165 1.30219 1.12324 0.89729 0.92055 1.24936 0.95322 0.95166 0.98989 1.69901 1.37322 1.23166 1.23171 0.86485 0.78517 0.79696 0.82982 1.19765 1.21224 1.21104 1.63808 1.57296 1.01451 1.02290 1.22639 0.97238 0.92461 0.95448 1.22983 1.00109 0.97948 0.96845 1.22306 0.97603 0.96027 0.94427 0.90786 1.20442 0.95427 0.95192 0.94913 1.22045 0.96023 1.01706 1.00641 1.21856 1.01149 0.98328 0.98198 1.21873 1.00225 0.97578 1.00087 1.23135 0.99158 0.96054 0.90342 0.97188 0.89548 0.95098 0.93156 0.91528 0.92617 0.92315 0.91461 0.92454 0.93332 0.91820 0.92964 0.93194 0.92696 0.92270 0.93231 0.92890 0.92102 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.41 37.16 0.31 -3.82 16 2 C 0.20 5.24 2.30 -68.87 -0.16 5.08 16 3 H 0.04 1.03 8.13 -51.93 -0.42 0.61 16 4 C -0.50 -13.83 7.86 -34.44 -0.27 -14.10 16 5 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 N -0.52 -11.61 5.16 -224.68 -1.16 -12.77 16 13 C 0.05 1.00 5.62 -2.84 -0.02 0.99 16 14 C -0.14 -2.25 5.53 -24.91 -0.14 -2.39 16 15 C -0.08 -1.29 2.39 -88.48 -0.21 -1.50 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.06 -0.75 0.60 -154.50 -0.09 -0.85 16 18 C -0.15 -1.93 7.72 37.16 0.29 -1.65 16 19 C -0.14 -1.52 8.34 37.16 0.31 -1.21 16 20 C -0.14 -1.65 8.24 37.16 0.31 -1.35 16 21 C 0.04 0.76 4.73 -2.30 -0.01 0.75 16 22 H 0.01 0.21 5.93 -51.93 -0.31 -0.10 16 23 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 24 H 0.03 0.72 6.10 -51.92 -0.32 0.41 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 26 H 0.07 1.46 5.34 -51.93 -0.28 1.19 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.07 5.64 -51.93 -0.29 0.78 16 30 H 0.06 0.76 6.33 -51.93 -0.33 0.43 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.95 5.64 -51.93 -0.29 0.66 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.61 7.58 -51.93 -0.39 0.21 16 36 H 0.06 0.75 7.21 -51.93 -0.37 0.37 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 40 H 0.05 0.96 3.60 -51.93 -0.19 0.78 16 LS Contribution 291.05 15.07 4.39 4.39 Total: -1.00 -28.25 291.05 -7.79 -36.04 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.84 Total: -0.54 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 0.22 Total: -18.55 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.53 Total: -37.96 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.25 -7.79 -36.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108304220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.862 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds