Wall clock time and date at job start Mon Mar 30 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46792 * 2 1 4 4 C 1.50701 * 109.47278 * 239.99905 * 2 1 3 5 5 H 1.07994 * 119.99952 * 239.99793 * 4 2 1 6 6 C 1.37876 * 120.00209 * 59.99746 * 4 2 1 7 7 N 1.31519 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00261 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46876 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46953 * 119.99813 * 8 6 4 11 11 H 1.48497 * 109.47118 * 240.00074 * 8 6 4 12 12 N 1.46899 * 109.47088 * 119.99672 * 2 1 3 13 13 C 1.47439 * 111.00210 * 55.84520 * 12 2 1 14 14 C 1.54316 * 107.23664 * 236.74393 * 13 12 2 15 15 C 1.55141 * 103.01475 * 337.71368 * 14 13 12 16 16 H 1.09002 * 110.99138 * 277.56012 * 15 14 13 17 17 C 1.53002 * 110.99095 * 153.74522 * 15 14 13 18 18 C 1.53004 * 109.47080 * 308.38891 * 17 15 14 19 19 C 1.53008 * 109.46810 * 68.38851 * 17 15 14 20 20 C 1.53002 * 109.47372 * 188.38904 * 17 15 14 21 21 C 1.47842 * 111.00026 * 295.00049 * 12 2 1 22 22 H 1.08995 * 109.47247 * 300.00347 * 1 2 3 23 23 H 1.09001 * 109.47292 * 60.00418 * 1 2 3 24 24 H 1.09007 * 109.47316 * 180.02562 * 1 2 3 25 25 H 0.96993 * 120.00299 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.88395 * 356.14947 * 13 12 2 27 27 H 1.09003 * 109.88706 * 117.33442 * 13 12 2 28 28 H 1.08996 * 110.70593 * 219.33407 * 14 13 12 29 29 H 1.08999 * 110.85878 * 96.16136 * 14 13 12 30 30 H 1.09000 * 109.46864 * 66.40812 * 18 17 15 31 31 H 1.09003 * 109.46898 * 186.40035 * 18 17 15 32 32 H 1.08996 * 109.46917 * 306.40711 * 18 17 15 33 33 H 1.09001 * 109.46921 * 60.00157 * 19 17 15 34 34 H 1.09005 * 109.46658 * 179.97438 * 19 17 15 35 35 H 1.08994 * 109.46770 * 300.00019 * 19 17 15 36 36 H 1.08997 * 109.47288 * 59.99899 * 20 17 15 37 37 H 1.08997 * 109.47197 * 180.02562 * 20 17 15 38 38 H 1.09001 * 109.46710 * 300.00103 * 20 17 15 39 39 H 1.09001 * 110.37491 * 265.19409 * 21 12 2 40 40 H 1.09000 * 110.37665 * 27.42206 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1660 -1.5869 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 7 2.0196 -0.6924 1.1995 13 6 1.4672 -2.0567 1.2846 14 6 0.7391 -2.1715 2.6403 15 6 1.4036 -1.0559 3.4893 16 1 2.3452 -1.3996 3.9175 17 6 0.4550 -0.5610 4.5830 18 6 -0.8934 -0.1932 3.9605 19 6 0.2528 -1.6666 5.6213 20 6 1.0569 0.6715 5.2609 21 6 1.6463 0.0440 2.4259 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7088 1.1612 -3.4844 26 1 0.7623 -2.2228 0.4699 27 1 2.2744 -2.7875 1.2341 28 1 0.9105 -3.1503 3.0881 29 1 -0.3283 -1.9836 2.5247 30 1 -1.3744 -1.0932 3.5776 31 1 -1.5301 0.2649 4.7174 32 1 -0.7363 0.5107 3.1433 33 1 1.2135 -1.9286 6.0647 34 1 -0.4226 -1.3138 6.4007 35 1 -0.1760 -2.5445 5.1383 36 1 1.2010 1.4590 4.5213 37 1 0.3814 1.0237 6.0404 38 1 2.0176 0.4093 5.7044 39 1 2.4593 0.6999 2.7370 40 1 0.7366 0.6211 2.2599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108304220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:26 Heat of formation + Delta-G solvation = -26.901752 kcal Electronic energy + Delta-G solvation = -16868.541524 eV Core-core repulsion = 14488.950342 eV Total energy + Delta-G solvation = -2379.591181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83087 -37.65980 -34.99680 -32.39237 -29.99010 -28.74927 -28.10771 -27.81646 -27.22777 -23.58139 -22.57337 -20.72432 -19.17570 -18.02699 -17.28660 -16.67420 -16.08944 -15.32980 -15.16752 -14.94491 -14.69326 -14.12403 -13.79521 -13.66531 -13.15284 -12.97617 -12.95937 -12.78377 -12.58459 -12.47398 -12.37353 -12.28111 -12.18407 -11.98283 -11.79977 -11.60247 -11.18319 -11.11022 -11.04578 -10.83741 -10.49899 -8.77643 -8.11693 -6.22566 1.39903 1.41501 1.53848 2.42397 3.16966 3.46584 3.72788 3.86344 3.97973 4.21047 4.28100 4.41969 4.54011 4.61699 4.74306 4.76969 4.81555 4.87682 4.93140 4.96176 5.00802 5.02769 5.06945 5.12826 5.16958 5.24860 5.27356 5.30984 5.38626 5.43198 5.52443 5.58958 5.67350 5.69977 5.87339 6.20857 6.52717 6.76612 6.92602 7.47172 8.94817 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.051990 B = 0.006844 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.434374 B = 4090.047026 C = 4242.762097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.211 3.789 3 H -0.002 1.002 4 C -0.513 4.513 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.542 5.542 13 C 0.049 3.951 14 C -0.130 4.130 15 C -0.073 4.073 16 H 0.080 0.920 17 C -0.055 4.055 18 C -0.146 4.146 19 C -0.134 4.134 20 C -0.140 4.140 21 C 0.039 3.961 22 H 0.027 0.973 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.261 0.739 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 -4.055 14.871 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.103 3.897 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.265 5.265 13 C -0.079 4.079 14 C -0.168 4.168 15 C -0.092 4.092 16 H 0.098 0.902 17 C -0.056 4.056 18 C -0.203 4.203 19 C -0.191 4.191 20 C -0.197 4.197 21 C -0.088 4.088 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.311 -3.966 14.681 15.382 hybrid contribution -0.516 0.055 -1.332 1.430 sum -2.827 -3.910 13.349 14.194 Atomic orbital electron populations 1.22180 1.00025 0.99113 0.99783 1.19136 0.90211 0.92619 0.87684 0.98409 1.21394 1.30435 1.12272 0.91098 0.93005 1.25715 0.95431 0.95849 1.01879 1.70026 1.38010 1.24234 1.23926 0.85475 0.78116 0.78606 0.79243 1.19366 1.20450 1.20643 1.63680 1.57900 1.02570 1.02375 1.22631 0.97037 0.91124 0.97116 1.22910 0.99669 0.99648 0.94544 1.22262 0.98572 0.94205 0.94120 0.90210 1.20429 0.94339 0.96302 0.94519 1.22032 0.96710 1.01168 1.00422 1.21818 1.02025 0.97441 0.97851 1.21867 1.01046 0.96694 1.00088 1.23186 0.98676 0.96910 0.90039 0.95421 0.92352 0.94824 0.92980 0.93948 0.92639 0.89710 0.91259 0.92546 0.91499 0.94218 0.92200 0.91697 0.92597 0.93783 0.91523 0.92150 0.92312 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.55 8.41 71.98 0.61 -6.94 16 2 C 0.21 11.16 2.30 44.17 0.10 11.26 16 3 H 0.00 -0.12 8.13 -2.38 -0.02 -0.14 16 4 C -0.51 -29.33 7.86 25.60 0.20 -29.13 16 5 H 0.05 2.99 7.60 -2.91 -0.02 2.97 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -54.24 11.32 21.45 0.24 -54.00 16 8 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 N -0.54 -24.28 5.16 -864.76 -4.46 -28.74 16 13 C 0.05 1.94 5.62 86.65 0.49 2.43 16 14 C -0.13 -3.89 5.53 31.77 0.18 -3.71 16 15 C -0.07 -2.07 2.39 -9.41 -0.02 -2.09 16 16 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.06 -1.26 0.60 -52.18 -0.03 -1.29 16 18 C -0.15 -3.54 7.72 71.98 0.56 -2.99 16 19 C -0.13 -2.44 8.34 71.98 0.60 -1.84 16 20 C -0.14 -2.95 8.24 71.98 0.59 -2.36 16 21 C 0.04 1.45 4.73 86.77 0.41 1.86 16 22 H 0.03 1.23 5.93 -2.39 -0.01 1.21 16 23 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 24 H 0.03 1.61 6.10 -2.38 -0.01 1.59 16 25 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.04 1.88 5.34 -2.38 -0.01 1.87 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.07 5.64 -2.39 -0.01 2.06 16 30 H 0.06 1.36 6.33 -2.39 -0.02 1.35 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.14 5.64 -2.39 -0.01 1.13 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.05 1.02 7.58 -2.39 -0.02 1.00 16 36 H 0.04 1.05 7.21 -2.39 -0.02 1.04 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 40 H 0.04 1.67 3.60 -2.39 -0.01 1.66 16 Total: -1.00 -61.32 291.05 2.93 -58.39 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.99 Total: 11.34 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 4.13 Total: -33.82 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -4.22 Total: -82.74 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -61.32 2.93 -58.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108304220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.492 kcal (2) G-P(sol) polarization free energy of solvation -61.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds