Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 C 1.53001 * 109.47414 * 120.00142 * 2 1 3 5 5 C 1.52999 * 109.46967 * 64.99978 * 4 2 1 6 6 N 1.46903 * 109.47005 * 185.05784 * 5 4 2 7 7 C 1.46903 * 110.99945 * 291.36008 * 6 5 4 8 8 H 1.09001 * 109.47084 * 55.00263 * 7 6 5 9 9 C 1.52999 * 109.46993 * 295.00151 * 7 6 5 10 10 C 1.50694 * 109.47169 * 175.00405 * 7 6 5 11 11 H 1.08001 * 120.00270 * 5.58273 * 10 7 6 12 12 C 1.37885 * 119.99958 * 185.58701 * 10 7 6 13 13 N 1.31517 * 119.99839 * 198.54921 * 12 10 7 14 14 Si 1.86798 * 119.99796 * 18.55217 * 12 10 7 15 15 H 1.48499 * 109.46816 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47220 * 299.99825 * 14 12 10 17 17 H 1.48496 * 109.47450 * 60.00368 * 14 12 10 18 18 C 1.46904 * 110.99953 * 167.40950 * 6 5 4 19 19 C 1.53000 * 117.50053 * 6.34056 * 18 6 5 20 20 C 1.52999 * 117.49569 * 297.71765 * 18 6 5 21 21 H 1.08999 * 109.47125 * 60.00111 * 1 2 3 22 22 H 1.09005 * 109.47085 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46924 * 299.99369 * 1 2 3 24 24 H 1.09002 * 109.47153 * 240.00161 * 2 1 3 25 25 H 1.08996 * 109.47323 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47405 * 300.00296 * 3 2 1 27 27 H 1.09002 * 109.46914 * 60.00014 * 3 2 1 28 28 H 1.09002 * 109.47091 * 305.00266 * 4 2 1 29 29 H 1.09004 * 109.47414 * 184.99945 * 4 2 1 30 30 H 1.08998 * 109.47226 * 65.05882 * 5 4 2 31 31 H 1.08994 * 109.47242 * 305.05151 * 5 4 2 32 32 H 1.09002 * 109.46828 * 176.46284 * 9 7 6 33 33 H 1.08996 * 109.47288 * 296.46298 * 9 7 6 34 34 H 1.09004 * 109.47111 * 56.46542 * 9 7 6 35 35 H 0.96993 * 120.00024 * 354.96813 * 13 12 10 36 36 H 1.09000 * 115.54873 * 152.04742 * 18 6 5 37 37 H 1.09009 * 117.49578 * 0.02562 * 19 18 6 38 38 H 1.08992 * 117.49901 * 145.02205 * 19 18 6 39 39 H 1.09004 * 117.49862 * 214.97518 * 20 18 6 40 40 H 1.08993 * 117.50052 * 0.02562 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.0183 -2.8609 2.4403 7 6 3.4792 -2.9602 2.5583 8 1 3.9201 -1.9685 2.4577 9 6 4.0190 -3.8727 1.4551 10 6 3.8365 -3.5346 3.9048 11 1 3.0579 -3.8831 4.5672 12 6 5.1576 -3.6152 4.2914 13 7 5.5088 -4.4229 5.2681 14 14 6.4484 -2.5773 3.4278 15 1 7.7809 -2.8464 4.0254 16 1 6.4756 -2.9218 1.9835 17 1 6.1151 -1.1390 3.5874 18 6 1.3904 -4.1847 2.5464 19 6 0.6085 -4.6951 1.3344 20 6 -0.1380 -4.2402 2.5901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6054 -0.2618 2.1370 29 1 3.1264 -0.6444 1.2951 30 1 2.1416 -2.6768 0.3512 31 1 0.5565 -2.2707 1.0518 32 1 5.1077 -3.8965 1.5037 33 1 3.6270 -4.8804 1.5928 34 1 3.7070 -3.4911 0.4829 35 1 4.8307 -4.9067 5.7650 36 1 1.9377 -4.9186 3.1380 37 1 0.5604 -4.0486 0.4579 38 1 0.6414 -5.7648 1.1282 39 1 -0.5962 -5.0109 3.2100 40 1 -0.6776 -3.2945 2.5396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109274881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = 15.055406 kcal Electronic energy + Delta-G solvation = -16631.851500 eV Core-core repulsion = 14254.079718 eV Total energy + Delta-G solvation = -2377.771782 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83496 -36.18090 -34.32088 -32.21695 -29.78466 -27.34573 -27.06420 -24.86449 -22.85170 -21.79764 -21.14820 -19.75176 -18.46424 -17.18332 -15.81763 -15.21713 -14.86786 -14.34130 -13.72787 -13.61295 -13.13644 -12.73755 -12.46074 -12.30338 -12.15181 -11.70070 -11.65614 -11.44538 -11.33531 -11.05960 -10.93798 -10.50090 -10.46538 -10.33581 -10.17282 -9.92863 -9.90877 -9.68289 -9.45999 -8.89425 -8.11028 -7.17431 -6.42297 -3.99405 3.38250 3.44469 3.60838 4.36134 4.51187 4.69499 5.04015 5.08610 5.13057 5.30121 5.46441 5.53084 5.58454 5.66451 5.68803 5.81971 5.85211 5.91937 5.98687 6.02508 6.08280 6.21406 6.24768 6.30842 6.37183 6.38618 6.47602 6.53730 6.56835 6.70660 6.74979 6.77649 7.03458 7.30900 7.78471 8.11753 8.36866 8.48428 9.02336 9.67043 10.98577 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.010024 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.348242 B = 2792.594104 C = 3741.374752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.044 3.956 6 N -0.493 5.493 7 C 0.187 3.813 8 H 0.035 0.965 9 C -0.183 4.183 10 C -0.587 4.587 11 H 0.064 0.936 12 C 0.030 3.970 13 N -0.908 5.908 14 Si 1.042 2.958 15 H -0.286 1.286 16 H -0.276 1.276 17 H -0.283 1.283 18 C 0.060 3.940 19 C -0.232 4.232 20 C -0.187 4.187 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.023 0.977 35 H 0.267 0.733 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 6.163 -10.666 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.149 4.149 5 C -0.083 4.083 6 N -0.213 5.213 7 C 0.080 3.920 8 H 0.052 0.948 9 C -0.242 4.242 10 C -0.625 4.625 11 H 0.082 0.918 12 C -0.175 4.175 13 N -0.542 5.542 14 Si 0.871 3.129 15 H -0.212 1.212 16 H -0.202 1.202 17 H -0.209 1.209 18 C -0.050 4.050 19 C -0.271 4.271 20 C -0.225 4.225 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.727 6.775 -10.310 14.051 hybrid contribution -1.450 -0.863 -0.615 1.796 sum -8.176 5.912 -10.925 14.871 Atomic orbital electron populations 1.21876 0.95605 1.01658 1.01191 1.21099 0.95650 0.96045 0.98752 1.21821 1.01027 0.96126 1.01290 1.21648 1.01171 0.94936 0.97169 1.22296 0.99672 0.94209 0.92169 1.62056 1.11208 1.16341 1.31691 1.19645 0.82327 0.94637 0.95392 0.94768 1.22859 1.01924 1.01327 0.98111 1.21971 0.94488 1.44930 1.01160 0.91816 1.25645 0.98300 0.95833 0.97675 1.70863 1.36613 1.23625 1.23143 0.84100 0.76246 0.76553 0.76026 1.21208 1.20231 1.20903 1.22579 0.91342 0.92845 0.98251 1.23514 1.09122 1.00889 0.93616 1.23000 0.96725 1.02101 1.00707 0.93345 0.92600 0.92706 0.91703 0.92731 0.93179 0.92701 0.91256 0.91867 0.94987 0.91624 0.92599 0.93353 0.95783 0.92296 0.85722 0.89121 0.89836 0.89453 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.95 37.15 0.33 -1.34 16 2 C -0.10 -1.23 2.92 -90.62 -0.26 -1.49 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 4 C -0.11 -1.78 4.56 -26.73 -0.12 -1.90 16 5 C 0.04 0.77 3.31 -3.82 -0.01 0.76 16 6 N -0.49 -10.33 4.67 -220.10 -1.03 -11.36 16 7 C 0.19 4.43 1.79 -68.87 -0.12 4.30 16 8 H 0.03 0.83 5.11 -51.93 -0.27 0.57 16 9 C -0.18 -4.07 8.35 37.16 0.31 -3.76 16 10 C -0.59 -16.31 8.01 -34.44 -0.28 -16.59 16 11 H 0.06 1.92 7.27 -52.49 -0.38 1.54 16 12 C 0.03 0.87 5.33 -17.82 -0.10 0.78 16 13 N -0.91 -27.74 13.70 55.43 0.76 -26.99 16 14 Si 1.04 25.15 26.43 -169.99 -4.49 20.66 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.16 5.57 56.52 0.31 -5.85 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.06 1.19 4.31 -67.71 -0.29 0.90 16 19 C -0.23 -3.81 9.52 -26.73 -0.25 -4.06 16 20 C -0.19 -3.10 9.97 -26.73 -0.27 -3.37 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.65 6.46 -51.93 -0.34 0.32 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.10 6.77 -51.93 -0.35 0.75 16 30 H 0.03 0.57 5.70 -51.93 -0.30 0.27 16 31 H 0.07 1.05 4.24 -51.93 -0.22 0.83 16 32 H 0.06 1.28 4.88 -51.93 -0.25 1.03 16 33 H 0.05 1.08 7.22 -51.93 -0.37 0.71 16 34 H 0.02 0.47 6.20 -51.93 -0.32 0.15 16 35 H 0.27 8.14 8.73 -40.82 -0.36 7.79 16 36 H 0.13 2.81 6.64 -51.93 -0.34 2.47 16 37 H 0.09 1.42 5.92 -51.92 -0.31 1.11 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.09 1.41 7.67 -51.93 -0.40 1.01 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -28.80 296.89 -7.90 -36.70 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.89 Total: 3.60 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -0.72 Total: -27.09 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.27 Total: -38.34 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -4.49 Total: 20.66 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.80 -7.90 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109274881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.756 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds