Wall clock time and date at job start Mon Mar 30 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 C 1.53001 * 109.47414 * 120.00142 * 2 1 3 5 5 C 1.52999 * 109.46967 * 64.99978 * 4 2 1 6 6 N 1.46903 * 109.47005 * 185.05784 * 5 4 2 7 7 C 1.46903 * 110.99945 * 291.36008 * 6 5 4 8 8 H 1.09001 * 109.47084 * 55.00263 * 7 6 5 9 9 C 1.52999 * 109.46993 * 295.00151 * 7 6 5 10 10 C 1.50694 * 109.47169 * 175.00405 * 7 6 5 11 11 H 1.08001 * 120.00270 * 5.58273 * 10 7 6 12 12 C 1.37885 * 119.99958 * 185.58701 * 10 7 6 13 13 N 1.31517 * 119.99839 * 198.54921 * 12 10 7 14 14 Si 1.86798 * 119.99796 * 18.55217 * 12 10 7 15 15 H 1.48499 * 109.46816 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47220 * 299.99825 * 14 12 10 17 17 H 1.48496 * 109.47450 * 60.00368 * 14 12 10 18 18 C 1.46904 * 110.99953 * 167.40950 * 6 5 4 19 19 C 1.53000 * 117.50053 * 6.34056 * 18 6 5 20 20 C 1.52999 * 117.49569 * 297.71765 * 18 6 5 21 21 H 1.08999 * 109.47125 * 60.00111 * 1 2 3 22 22 H 1.09005 * 109.47085 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46924 * 299.99369 * 1 2 3 24 24 H 1.09002 * 109.47153 * 240.00161 * 2 1 3 25 25 H 1.08996 * 109.47323 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47405 * 300.00296 * 3 2 1 27 27 H 1.09002 * 109.46914 * 60.00014 * 3 2 1 28 28 H 1.09002 * 109.47091 * 305.00266 * 4 2 1 29 29 H 1.09004 * 109.47414 * 184.99945 * 4 2 1 30 30 H 1.08998 * 109.47226 * 65.05882 * 5 4 2 31 31 H 1.08994 * 109.47242 * 305.05151 * 5 4 2 32 32 H 1.09002 * 109.46828 * 176.46284 * 9 7 6 33 33 H 1.08996 * 109.47288 * 296.46298 * 9 7 6 34 34 H 1.09004 * 109.47111 * 56.46542 * 9 7 6 35 35 H 0.96993 * 120.00024 * 354.96813 * 13 12 10 36 36 H 1.09000 * 115.54873 * 152.04742 * 18 6 5 37 37 H 1.09009 * 117.49578 * 0.02562 * 19 18 6 38 38 H 1.08992 * 117.49901 * 145.02205 * 19 18 6 39 39 H 1.09004 * 117.49862 * 214.97518 * 20 18 6 40 40 H 1.08993 * 117.50052 * 0.02562 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.0183 -2.8609 2.4403 7 6 3.4792 -2.9602 2.5583 8 1 3.9201 -1.9685 2.4577 9 6 4.0190 -3.8727 1.4551 10 6 3.8365 -3.5346 3.9048 11 1 3.0579 -3.8831 4.5672 12 6 5.1576 -3.6152 4.2914 13 7 5.5088 -4.4229 5.2681 14 14 6.4484 -2.5773 3.4278 15 1 7.7809 -2.8464 4.0254 16 1 6.4756 -2.9218 1.9835 17 1 6.1151 -1.1390 3.5874 18 6 1.3904 -4.1847 2.5464 19 6 0.6085 -4.6951 1.3344 20 6 -0.1380 -4.2402 2.5901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6054 -0.2618 2.1370 29 1 3.1264 -0.6444 1.2951 30 1 2.1416 -2.6768 0.3512 31 1 0.5565 -2.2707 1.0518 32 1 5.1077 -3.8965 1.5037 33 1 3.6270 -4.8804 1.5928 34 1 3.7070 -3.4911 0.4829 35 1 4.8307 -4.9067 5.7650 36 1 1.9377 -4.9186 3.1380 37 1 0.5604 -4.0486 0.4579 38 1 0.6414 -5.7648 1.1282 39 1 -0.5962 -5.0109 3.2100 40 1 -0.6776 -3.2945 2.5396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109274881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:29 Heat of formation + Delta-G solvation = -2.586710 kcal Electronic energy + Delta-G solvation = -16632.616520 eV Core-core repulsion = 14254.079718 eV Total energy + Delta-G solvation = -2378.536802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34907 -37.29071 -36.06940 -34.15397 -31.39086 -28.79236 -27.96732 -26.85023 -24.27717 -23.14023 -22.88276 -20.82517 -20.29522 -19.07111 -17.37721 -16.81395 -16.07712 -15.79770 -15.30258 -14.79336 -14.62896 -14.30264 -14.16568 -13.80373 -13.49039 -13.18269 -13.07219 -12.85144 -12.69190 -12.39412 -12.25206 -12.17112 -11.84288 -11.67771 -11.59521 -11.41806 -11.34690 -11.27578 -11.00812 -10.94085 -10.29538 -8.78514 -8.67764 -6.28402 1.43842 1.52431 1.70342 2.49286 2.92568 3.09247 3.27667 3.93865 3.97387 4.03702 4.09992 4.19381 4.29794 4.42423 4.54816 4.56598 4.64597 4.73029 4.76002 4.82158 4.84541 4.90399 4.92374 5.04168 5.06769 5.10491 5.19182 5.21729 5.24734 5.29526 5.35686 5.50972 5.52302 5.58205 5.89125 6.08686 6.36363 6.65172 6.78140 7.47501 8.68246 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.010024 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.348242 B = 2792.594104 C = 3741.374752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.109 4.109 5 C 0.048 3.952 6 N -0.509 5.509 7 C 0.191 3.809 8 H 0.035 0.965 9 C -0.174 4.174 10 C -0.583 4.583 11 H 0.022 0.978 12 C -0.022 4.022 13 N -0.941 5.941 14 Si 1.079 2.921 15 H -0.290 1.290 16 H -0.243 1.243 17 H -0.265 1.265 18 C 0.022 3.978 19 C -0.205 4.205 20 C -0.170 4.170 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.052 0.948 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 7.564 -13.560 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.147 4.147 5 C -0.079 4.079 6 N -0.230 5.230 7 C 0.083 3.917 8 H 0.052 0.948 9 C -0.232 4.232 10 C -0.622 4.622 11 H 0.040 0.960 12 C -0.219 4.219 13 N -0.578 5.578 14 Si 0.901 3.099 15 H -0.217 1.217 16 H -0.168 1.168 17 H -0.191 1.191 18 C -0.088 4.088 19 C -0.244 4.244 20 C -0.208 4.208 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.777 8.172 -13.220 17.379 hybrid contribution -1.259 -1.341 0.343 1.871 sum -9.037 6.831 -12.876 17.150 Atomic orbital electron populations 1.21857 0.94449 1.01788 1.02016 1.21068 0.96570 0.96396 0.97018 1.21815 1.00806 0.95416 1.02150 1.21637 1.00112 0.94423 0.98530 1.22378 1.00703 0.94491 0.90333 1.61992 1.09388 1.17315 1.34256 1.19422 0.84670 0.94320 0.93279 0.94753 1.22685 1.01177 1.00446 0.98942 1.22150 0.93489 1.43896 1.02633 0.96002 1.27055 1.01059 0.96067 0.97754 1.70996 1.36129 1.25730 1.24954 0.83651 0.73503 0.75850 0.76887 1.21658 1.16811 1.19059 1.22360 0.93086 0.92160 1.01223 1.23543 1.05969 1.01806 0.93118 1.23068 0.94061 1.02907 1.00755 0.91452 0.92784 0.93020 0.91052 0.93148 0.91252 0.92941 0.92549 0.93515 0.94739 0.89853 0.93349 0.94464 0.92872 0.94114 0.89904 0.87564 0.88706 0.88332 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.95 71.98 0.64 -2.16 16 2 C -0.09 -2.05 2.92 -10.79 -0.03 -2.08 16 3 C -0.14 -2.88 9.19 71.98 0.66 -2.22 16 4 C -0.11 -3.27 4.56 30.59 0.14 -3.13 16 5 C 0.05 1.55 3.31 86.30 0.29 1.84 16 6 N -0.51 -21.06 4.67 -850.27 -3.97 -25.03 16 7 C 0.19 9.00 1.79 44.17 0.08 9.08 16 8 H 0.03 1.64 5.11 -2.39 -0.01 1.62 16 9 C -0.17 -7.48 8.35 71.98 0.60 -6.87 16 10 C -0.58 -33.56 8.01 25.60 0.21 -33.35 16 11 H 0.02 1.40 7.27 -2.91 -0.02 1.38 16 12 C -0.02 -1.27 5.33 84.66 0.45 -0.82 16 13 N -0.94 -59.88 13.70 21.45 0.29 -59.59 16 14 Si 1.08 50.42 26.43 68.60 1.81 52.23 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.24 -10.07 5.57 99.48 0.55 -9.52 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 C 0.02 0.85 4.31 44.91 0.19 1.04 16 19 C -0.21 -6.21 9.52 30.59 0.29 -5.92 16 20 C -0.17 -5.31 9.97 30.59 0.31 -5.00 16 21 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.05 1.06 6.46 -2.38 -0.02 1.05 16 23 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.54 6.77 -2.38 -0.02 1.52 16 30 H 0.03 1.10 5.70 -2.39 -0.01 1.09 16 31 H 0.08 2.39 4.24 -2.39 -0.01 2.38 16 32 H 0.05 2.13 4.88 -2.39 -0.01 2.11 16 33 H 0.04 1.65 7.22 -2.39 -0.02 1.63 16 34 H 0.05 1.96 6.20 -2.38 -0.01 1.94 16 35 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 36 H 0.08 3.94 6.64 -2.39 -0.02 3.92 16 37 H 0.11 2.90 5.92 -2.38 -0.01 2.89 16 38 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 40 H 0.10 2.87 7.67 -2.39 -0.02 2.86 16 Total: -1.00 -64.38 296.89 2.77 -61.61 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.80 Total: 20.37 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 3.83 Total: -49.60 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -3.68 Total: -84.62 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 1.81 Total: 52.23 kcal Total: -64.38 2.77 -61.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109274881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.028 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds