Wall clock time and date at job start Mon Mar 30 2020 03:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48503 * 109.46887 * 240.00202 * 3 2 1 5 5 H 1.48508 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47216 * 119.99818 * 3 2 1 7 7 C 1.39871 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99917 * 162.66611 * 7 2 1 9 9 C 1.41193 * 120.00235 * 342.67226 * 7 2 1 10 10 C 1.40794 * 120.16971 * 334.75994 * 9 7 2 11 11 C 1.37752 * 119.85735 * 180.25468 * 10 9 7 12 12 C 1.39961 * 120.08310 * 359.42009 * 11 10 9 13 13 C 1.39283 * 120.19834 * 0.60319 * 12 11 10 14 14 Cl 1.73606 * 119.85255 * 179.69706 * 13 12 11 15 15 C 1.37534 * 120.29964 * 359.68014 * 13 12 11 16 16 O 1.36351 * 108.50766 * 180.36980 * 12 11 10 17 17 C 1.44324 * 105.43264 * 342.22770 * 16 12 11 18 18 O 1.36524 * 131.38450 * 179.71894 * 11 10 9 19 19 H 0.96992 * 120.00173 * 0.02562 * 1 2 3 20 20 H 1.08007 * 120.06893 * 359.97332 * 10 9 7 21 21 H 1.08004 * 120.04952 * 179.97438 * 15 13 12 22 22 H 1.09000 * 111.02791 * 269.12433 * 17 16 12 23 23 H 1.08996 * 110.37513 * 146.24056 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0967 1.6963 -1.2126 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0515 -1.2327 -0.2781 9 6 1.3504 -2.4062 0.3653 10 6 0.2227 -2.3645 1.2072 11 6 -0.4110 -3.5346 1.5632 12 6 0.0575 -4.7615 1.0793 13 6 1.1731 -4.8062 0.2466 14 17 1.7513 -6.3337 -0.3420 15 6 1.8185 -3.6458 -0.1117 16 8 -0.7408 -5.7529 1.5682 17 6 -1.4397 -5.1668 2.6867 18 8 -1.4988 -3.7672 2.3548 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1419 -1.4174 1.5768 21 1 2.6835 -3.6852 -0.7573 22 1 -0.8881 -5.3171 3.6147 23 1 -2.4435 -5.5837 2.7675 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116250694.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:50 Heat of formation + Delta-G solvation = -73.302726 kcal Electronic energy + Delta-G solvation = -13140.574118 eV Core-core repulsion = 10558.628964 eV Total energy + Delta-G solvation = -2581.945154 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.60672 -38.69404 -37.40131 -36.76973 -35.24851 -31.26078 -30.75911 -27.56477 -26.10457 -23.41329 -23.17567 -19.76332 -18.56999 -18.17288 -17.96341 -16.89008 -16.47519 -15.48443 -15.17068 -14.80536 -14.60843 -14.06429 -13.72671 -13.65968 -13.22876 -12.84536 -12.53932 -12.49074 -12.07002 -11.85632 -11.76556 -11.44650 -10.83728 -9.32515 -9.00210 -8.69568 -6.46155 0.57993 0.63854 1.28561 1.43322 1.50702 1.56700 2.13133 2.19630 2.51704 2.88274 3.41834 4.00428 4.14392 4.18486 4.56792 4.68171 4.86939 5.04910 5.16165 5.32796 5.53904 5.71955 5.86753 6.20535 6.51077 6.71674 6.74490 8.20697 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.032992 B = 0.009526 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.493249 B = 2938.635119 C = 3692.389366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.470 4.470 8 H 0.098 0.902 9 C 0.108 3.892 10 C -0.171 4.171 11 C 0.055 3.945 12 C -0.116 4.116 13 C 0.027 3.973 14 Cl -0.080 7.080 15 C -0.226 4.226 16 O -0.324 6.324 17 C 0.205 3.795 18 O -0.335 6.335 19 H 0.295 0.705 20 H 0.119 0.881 21 H 0.133 0.867 22 H 0.092 0.908 23 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -2.639 2.685 3.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.182 4.182 3 Si 0.810 3.190 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.497 4.497 8 H 0.116 0.884 9 C 0.105 3.895 10 C -0.191 4.191 11 C 0.011 3.989 12 C -0.161 4.161 13 C 0.000 4.000 14 Cl -0.051 7.051 15 C -0.246 4.246 16 O -0.242 6.242 17 C 0.094 3.906 18 O -0.252 6.252 19 H 0.106 0.894 20 H 0.137 0.863 21 H 0.151 0.849 22 H 0.109 0.891 23 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.530 -2.723 2.629 3.822 hybrid contribution -0.052 0.340 0.062 0.350 sum 0.478 -2.383 2.691 3.626 Atomic orbital electron populations 1.69882 1.09367 1.31557 1.32907 1.26928 0.95458 1.05063 0.90774 0.85106 0.78660 0.74731 0.80472 1.17820 1.19433 1.18105 1.19843 0.98896 0.91200 1.39800 0.88406 1.17478 0.90537 0.92986 0.88496 1.20364 0.99995 0.94532 1.04245 1.19703 0.88213 0.94778 0.96219 1.18973 0.99545 0.86163 1.11372 1.19624 0.93578 0.86941 0.99839 1.98268 1.88245 1.30944 1.87643 1.20821 1.05528 0.89764 1.08477 1.87191 1.55679 1.34724 1.46587 1.25899 1.00244 0.74820 0.89614 1.87218 1.42514 1.29179 1.66271 0.89423 0.86322 0.84923 0.89068 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.16 10.97 21.82 0.24 -39.92 14 2 C 0.04 1.64 5.14 85.23 0.44 2.07 14 3 Si 0.99 34.79 29.59 68.60 2.03 36.82 14 4 H -0.25 -8.56 7.11 99.48 0.71 -7.85 14 5 H -0.27 -9.10 7.11 99.48 0.71 -8.40 14 6 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 7 C -0.47 -23.14 9.04 23.39 0.21 -22.93 14 8 H 0.10 4.47 7.90 -2.91 -0.02 4.44 14 9 C 0.11 5.57 5.57 -21.30 -0.12 5.46 14 10 C -0.17 -8.98 8.69 22.78 0.20 -8.78 14 11 C 0.06 2.73 7.13 22.57 0.16 2.89 14 12 C -0.12 -5.50 6.96 22.94 0.16 -5.34 14 13 C 0.03 1.26 6.32 22.35 0.14 1.40 14 14 Cl -0.08 -3.09 28.95 -2.72 -0.08 -3.17 14 15 C -0.23 -10.70 9.55 22.74 0.22 -10.48 14 16 O -0.32 -13.62 11.41 -74.31 -0.85 -14.47 14 17 C 0.21 6.91 8.89 113.37 1.01 7.92 14 18 O -0.33 -14.64 11.40 -76.34 -0.87 -15.51 14 19 H 0.29 13.14 8.30 -92.71 -0.77 12.37 14 20 H 0.12 6.45 6.19 -2.91 -0.02 6.43 14 21 H 0.13 5.76 8.06 -2.91 -0.02 5.73 14 22 H 0.09 2.61 8.14 -2.39 -0.02 2.59 14 23 H 0.16 3.79 8.14 -2.39 -0.02 3.77 14 Total: -1.00 -57.20 227.64 4.14 -53.06 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.25 Total: 10.99 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 2.42 Total: -27.79 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.24 Total: -39.92 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.72 Total: -29.98 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Atomic # 17 Polarization: -3.09 SS G_CDS: -0.08 Total: -3.17 kcal Total: -57.20 4.14 -53.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116250694.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.242 kcal (2) G-P(sol) polarization free energy of solvation -57.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds