Wall clock time and date at job start Mon Mar 30 2020 03:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48505 * 109.46934 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47160 * 120.00089 * 3 2 1 6 6 H 1.48495 * 109.47309 * 240.00389 * 3 2 1 7 7 C 1.40251 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00061 * 154.62280 * 7 2 1 9 9 C 1.41015 * 119.99974 * 334.62313 * 7 2 1 10 10 C 1.40934 * 120.11237 * 334.31497 * 9 7 2 11 11 C 1.36239 * 119.91453 * 179.76283 * 10 9 7 12 12 C 1.40124 * 120.13747 * 0.51488 * 11 10 9 13 13 C 1.47508 * 119.88603 * 179.75876 * 12 11 10 14 14 O 1.21512 * 119.99429 * 179.97438 * 13 12 11 15 15 O 1.34773 * 120.00492 * 359.97438 * 13 12 11 16 16 C 1.39977 * 120.21973 * 359.73950 * 12 11 10 17 17 C 1.36492 * 120.08789 * 359.97438 * 16 12 11 18 18 Cl 1.73599 * 120.07140 * 179.97438 * 17 16 12 19 19 H 0.97002 * 119.99492 * 174.18421 * 1 2 3 20 20 H 1.08002 * 120.03990 * 0.02562 * 10 9 7 21 21 H 1.08003 * 119.92931 * 180.25298 * 11 10 9 22 22 H 0.96700 * 117.00374 * 179.97438 * 15 13 12 23 23 H 1.08008 * 119.95499 * 180.02562 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2754 2.7465 0.0006 5 1 3.0942 1.6963 1.2124 6 1 3.0941 1.6964 -1.2125 7 6 2.0077 -1.2146 -0.0005 8 1 3.0095 -1.2596 -0.4014 9 6 1.4046 -2.3771 0.5223 10 6 0.3928 -2.2713 1.4976 11 6 -0.1905 -3.3969 1.9965 12 6 0.2211 -4.6597 1.5498 13 6 -0.4105 -5.8749 2.0976 14 8 -0.0555 -6.9709 1.7113 15 8 -1.3813 -5.7697 3.0265 16 6 1.2292 -4.7716 0.5852 17 6 1.8157 -3.6497 0.0749 18 17 3.0664 -3.7891 -1.1208 19 1 -0.4849 -0.8358 -0.0851 20 1 0.0773 -1.2989 1.8460 21 1 -0.9687 -3.3159 2.7410 22 1 -1.7655 -6.5939 3.3554 23 1 1.5428 -5.7471 0.2436 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141735111.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:26 Heat of formation + Delta-G solvation = -103.356586 kcal Electronic energy + Delta-G solvation = -12857.457435 eV Core-core repulsion = 10274.209048 eV Total energy + Delta-G solvation = -2583.248387 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.44177 -37.82181 -35.36082 -35.27219 -34.31731 -30.18469 -29.66558 -26.25509 -22.92841 -21.36050 -20.39057 -18.39245 -17.35015 -16.51393 -14.89433 -14.82773 -14.68149 -14.07485 -13.82602 -12.75068 -12.71722 -12.52846 -12.01228 -11.53376 -11.31164 -10.98258 -10.64331 -10.50743 -10.34440 -10.10219 -9.94813 -9.55510 -9.36587 -8.08299 -7.94986 -7.62048 -4.94889 1.82376 2.52973 2.91349 2.97433 3.16889 3.32419 3.44430 3.70732 3.97228 4.25301 5.05958 5.88572 5.96499 6.15381 6.49936 6.56332 6.92800 7.05750 7.13050 7.24868 7.31115 7.43969 7.62163 7.77461 8.19027 8.30142 8.69271 9.53358 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.032377 B = 0.009269 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.615213 B = 3020.240295 C = 3782.736364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.033 3.967 3 Si 1.068 2.932 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.456 4.456 8 H 0.097 0.903 9 C 0.108 3.892 10 C -0.228 4.228 11 C -0.020 4.020 12 C -0.283 4.283 13 C 0.531 3.469 14 O -0.559 6.559 15 O -0.524 6.524 16 C 0.004 3.996 17 C -0.150 4.150 18 Cl -0.107 7.107 19 H 0.307 0.693 20 H 0.117 0.883 21 H 0.110 0.890 22 H 0.397 0.603 23 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -0.051 1.791 1.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.194 4.194 3 Si 0.890 3.110 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.115 0.885 9 C 0.103 3.897 10 C -0.247 4.247 11 C -0.039 4.039 12 C -0.285 4.285 13 C 0.383 3.617 14 O -0.453 6.453 15 O -0.334 6.334 16 C -0.016 4.016 17 C -0.178 4.178 18 Cl -0.078 7.078 19 H 0.122 0.878 20 H 0.135 0.865 21 H 0.128 0.872 22 H 0.253 0.747 23 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.492 1.678 1.483 2.293 hybrid contribution -0.044 -2.393 0.080 2.395 sum 0.449 -0.714 1.563 1.776 Atomic orbital electron populations 1.70397 1.08371 1.35259 1.23480 1.27458 0.95581 1.05047 0.91284 0.83569 0.75796 0.72956 0.78711 1.19315 1.19363 1.19431 1.21138 1.03180 0.93401 1.30315 0.88546 1.17622 0.90725 0.91240 0.90080 1.20791 1.03862 0.97785 1.02284 1.20627 0.95917 0.91535 0.95853 1.17893 1.09079 0.89917 1.11636 1.21045 0.75870 0.89488 0.75310 1.90763 1.63918 1.29714 1.60920 1.84632 1.51901 1.41097 1.55804 1.20211 0.92197 0.96852 0.92296 1.20204 1.01303 0.94400 1.01846 1.98224 1.53811 1.98175 1.57635 0.87842 0.86468 0.87227 0.74688 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.63 12.31 55.56 0.68 -16.95 14 2 C 0.03 0.74 4.93 -17.30 -0.09 0.65 14 3 Si 1.07 18.89 30.00 -169.99 -5.10 13.79 14 4 H -0.27 -4.73 7.11 56.52 0.40 -4.33 14 5 H -0.27 -4.59 7.11 56.52 0.40 -4.19 14 6 H -0.27 -4.55 7.11 56.52 0.40 -4.15 14 7 C -0.46 -10.74 8.44 -37.77 -0.32 -11.05 14 8 H 0.10 2.23 7.16 -52.48 -0.38 1.86 14 9 C 0.11 2.60 5.30 -106.77 -0.57 2.04 14 10 C -0.23 -5.27 7.89 -39.28 -0.31 -5.58 14 11 C -0.02 -0.44 9.54 -39.59 -0.38 -0.82 14 12 C -0.28 -6.33 5.89 -104.76 -0.62 -6.95 14 13 C 0.53 11.08 8.26 34.51 0.29 11.37 14 14 O -0.56 -12.72 17.11 -19.27 -0.33 -13.05 14 15 O -0.52 -8.78 12.65 -40.69 -0.51 -9.30 14 16 C 0.00 0.09 9.30 -39.56 -0.37 -0.28 14 17 C -0.15 -3.52 6.33 -39.16 -0.25 -3.77 14 18 Cl -0.11 -2.26 27.56 -51.86 -1.43 -3.69 14 19 H 0.31 7.39 6.69 -40.82 -0.27 7.11 14 20 H 0.12 2.70 6.49 -52.49 -0.34 2.36 14 21 H 0.11 2.15 7.59 -52.48 -0.40 1.75 14 22 H 0.40 4.53 9.11 45.56 0.42 4.94 14 23 H 0.11 2.56 7.63 -52.48 -0.40 2.16 14 LS Contribution 231.51 15.07 3.49 3.49 Total: -1.00 -26.61 231.51 -5.98 -32.59 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -0.17 Total: 7.51 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.61 Total: -14.39 kcal Atomic # 7 Polarization: -17.63 SS G_CDS: 0.68 Total: -16.95 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.84 Total: -22.35 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.10 Total: 13.79 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.43 Total: -3.69 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -26.61 -5.98 -32.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141735111.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.769 kcal (2) G-P(sol) polarization free energy of solvation -26.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds