Wall clock time and date at job start Mon Mar 30 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48505 * 109.46934 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47160 * 120.00089 * 3 2 1 6 6 H 1.48495 * 109.47309 * 240.00389 * 3 2 1 7 7 C 1.40251 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00061 * 154.62280 * 7 2 1 9 9 C 1.41015 * 119.99974 * 334.62313 * 7 2 1 10 10 C 1.40934 * 120.11237 * 334.31497 * 9 7 2 11 11 C 1.36239 * 119.91453 * 179.76283 * 10 9 7 12 12 C 1.40124 * 120.13747 * 0.51488 * 11 10 9 13 13 C 1.47508 * 119.88603 * 179.75876 * 12 11 10 14 14 O 1.21512 * 119.99429 * 179.97438 * 13 12 11 15 15 O 1.34773 * 120.00492 * 359.97438 * 13 12 11 16 16 C 1.39977 * 120.21973 * 359.73950 * 12 11 10 17 17 C 1.36492 * 120.08789 * 359.97438 * 16 12 11 18 18 Cl 1.73599 * 120.07140 * 179.97438 * 17 16 12 19 19 H 0.97002 * 119.99492 * 174.18421 * 1 2 3 20 20 H 1.08002 * 120.03990 * 0.02562 * 10 9 7 21 21 H 1.08003 * 119.92931 * 180.25298 * 11 10 9 22 22 H 0.96700 * 117.00374 * 179.97438 * 15 13 12 23 23 H 1.08008 * 119.95499 * 180.02562 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2754 2.7465 0.0006 5 1 3.0942 1.6963 1.2124 6 1 3.0941 1.6964 -1.2125 7 6 2.0077 -1.2146 -0.0005 8 1 3.0095 -1.2596 -0.4014 9 6 1.4046 -2.3771 0.5223 10 6 0.3928 -2.2713 1.4976 11 6 -0.1905 -3.3969 1.9965 12 6 0.2211 -4.6597 1.5498 13 6 -0.4105 -5.8749 2.0976 14 8 -0.0555 -6.9709 1.7113 15 8 -1.3813 -5.7697 3.0265 16 6 1.2292 -4.7716 0.5852 17 6 1.8157 -3.6497 0.0749 18 17 3.0664 -3.7891 -1.1208 19 1 -0.4849 -0.8358 -0.0851 20 1 0.0773 -1.2989 1.8460 21 1 -0.9687 -3.3159 2.7410 22 1 -1.7655 -6.5939 3.3554 23 1 1.5428 -5.7471 0.2436 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141735111.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:25 Heat of formation + Delta-G solvation = -118.390270 kcal Electronic energy + Delta-G solvation = -12858.109344 eV Core-core repulsion = 10274.209048 eV Total energy + Delta-G solvation = -2583.900297 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.07670 -39.54301 -37.00857 -36.90201 -36.04800 -31.94120 -31.43366 -28.00135 -24.61865 -23.12196 -22.05683 -20.12818 -18.93656 -18.16225 -16.63400 -16.43571 -16.37929 -15.55007 -15.51411 -14.50175 -14.48292 -14.14048 -13.75551 -13.18808 -12.80489 -12.51217 -12.23812 -12.11679 -11.92904 -11.78443 -11.63181 -11.23645 -11.04509 -9.87647 -9.71990 -9.38154 -6.75250 0.08905 0.73976 1.43032 1.53628 1.58653 1.81669 1.85793 2.25192 2.46638 2.56435 3.27950 4.09558 4.29605 4.53739 4.72175 4.79507 5.14840 5.35201 5.44212 5.52363 5.61707 5.75613 5.85025 6.00215 6.41025 6.53675 7.20118 7.75470 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.032377 B = 0.009269 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.615213 B = 3020.240295 C = 3782.736364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.007 3.993 3 Si 1.115 2.885 4 H -0.267 1.267 5 H -0.258 1.258 6 H -0.256 1.256 7 C -0.476 4.476 8 H 0.095 0.905 9 C 0.088 3.912 10 C -0.239 4.239 11 C -0.014 4.014 12 C -0.293 4.293 13 C 0.541 3.459 14 O -0.580 6.580 15 O -0.510 6.510 16 C -0.004 4.004 17 C -0.166 4.166 18 Cl -0.093 7.093 19 H 0.295 0.705 20 H 0.113 0.887 21 H 0.133 0.867 22 H 0.424 0.576 23 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 0.240 2.343 2.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.216 4.216 3 Si 0.930 3.070 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.180 1.180 7 C -0.501 4.501 8 H 0.113 0.887 9 C 0.083 3.917 10 C -0.258 4.258 11 C -0.033 4.033 12 C -0.296 4.296 13 C 0.392 3.608 14 O -0.476 6.476 15 O -0.323 6.323 16 C -0.023 4.023 17 C -0.193 4.193 18 Cl -0.065 7.065 19 H 0.108 0.892 20 H 0.131 0.869 21 H 0.150 0.850 22 H 0.284 0.716 23 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.402 1.932 2.053 2.848 hybrid contribution -0.083 -2.607 -0.048 2.609 sum 0.319 -0.675 2.005 2.139 Atomic orbital electron populations 1.70496 1.08984 1.34412 1.25062 1.28711 0.95532 1.07584 0.89726 0.83014 0.74968 0.69353 0.79616 1.19134 1.18277 1.17987 1.21306 1.03354 0.94133 1.31284 0.88656 1.17924 0.91313 0.91814 0.90618 1.20818 1.04286 0.98104 1.02601 1.20813 0.95879 0.90857 0.95753 1.18185 1.08963 0.91016 1.11440 1.20714 0.76163 0.88394 0.75524 1.90761 1.64791 1.30278 1.61817 1.84548 1.50451 1.43049 1.54289 1.20340 0.92550 0.96802 0.92657 1.20377 1.02002 0.94458 1.02460 1.98213 1.53128 1.98133 1.57021 0.89208 0.86875 0.84956 0.71552 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.92 12.31 21.88 0.27 -35.65 14 2 C 0.01 0.29 4.93 85.36 0.42 0.72 14 3 Si 1.12 36.84 30.00 68.60 2.06 38.90 14 4 H -0.27 -8.70 7.11 99.48 0.71 -7.99 14 5 H -0.26 -8.08 7.11 99.48 0.71 -7.38 14 6 H -0.26 -7.85 7.11 99.48 0.71 -7.15 14 7 C -0.48 -22.40 8.44 23.44 0.20 -22.20 14 8 H 0.10 4.39 7.16 -2.91 -0.02 4.37 14 9 C 0.09 4.24 5.30 -21.26 -0.11 4.13 14 10 C -0.24 -10.98 7.89 22.46 0.18 -10.81 14 11 C -0.01 -0.61 9.54 22.26 0.21 -0.39 14 12 C -0.29 -12.80 5.89 -19.95 -0.12 -12.92 14 13 C 0.54 21.45 8.26 70.27 0.58 22.03 14 14 O -0.58 -25.46 17.11 19.80 0.34 -25.12 14 15 O -0.51 -15.50 12.65 -56.84 -0.72 -16.22 14 16 C 0.00 -0.19 9.30 22.28 0.21 0.02 14 17 C -0.17 -7.74 6.33 22.54 0.14 -7.60 14 18 Cl -0.09 -3.91 27.56 -2.72 -0.07 -3.99 14 19 H 0.29 14.35 6.69 -92.71 -0.62 13.73 14 20 H 0.11 5.23 6.49 -2.91 -0.02 5.21 14 21 H 0.13 4.91 7.59 -2.91 -0.02 4.88 14 22 H 0.42 8.11 9.11 -74.06 -0.67 7.44 14 23 H 0.12 5.17 7.63 -2.91 -0.02 5.14 14 Total: -1.00 -55.15 231.51 4.32 -50.83 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.74 Total: 18.27 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 1.71 Total: -27.02 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.27 Total: -35.65 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.38 Total: -41.33 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.06 Total: 38.90 kcal Atomic # 17 Polarization: -3.91 SS G_CDS: -0.07 Total: -3.99 kcal Total: -55.15 4.32 -50.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141735111.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.559 kcal (2) G-P(sol) polarization free energy of solvation -55.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds