Wall clock time and date at job start Mon Mar 30 2020 03:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31496 * 1 3 3 Si 1.86806 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46819 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47036 * 300.00206 * 3 2 1 6 6 H 1.48498 * 109.46751 * 59.99763 * 3 2 1 7 7 C 1.38725 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99662 * 180.02562 * 7 2 1 9 9 O 1.34781 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.35479 * 116.99708 * 180.02562 * 9 7 2 11 11 C 1.38932 * 120.18591 * 90.00089 * 10 9 7 12 12 Cl 1.73599 * 119.96695 * 0.02562 * 11 10 9 13 13 C 1.38125 * 120.06977 * 179.74229 * 11 10 9 14 14 C 1.38644 * 120.45666 * 0.26036 * 13 11 10 15 15 C 1.37706 * 120.37814 * 359.96977 * 14 13 11 16 16 C 1.40003 * 119.91472 * 0.03167 * 15 14 13 17 17 C 1.46768 * 120.22715 * 179.97438 * 16 15 14 18 18 O 1.21304 * 120.00456 * 179.97438 * 17 16 15 19 19 H 0.96998 * 120.00467 * 0.02562 * 1 2 3 20 20 H 1.07996 * 119.76732 * 180.23269 * 13 11 10 21 21 H 1.08003 * 119.80961 * 179.97438 * 14 13 11 22 22 H 1.08001 * 120.04524 * 179.97438 * 15 14 13 23 23 H 1.08002 * 119.99787 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.7089 1.3464 0.0006 5 1 1.8901 2.3965 -1.2125 6 1 1.8901 2.3964 1.2125 7 6 2.0086 -1.2014 -0.0005 8 1 3.0886 -1.2013 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0726 -3.5048 -0.0005 11 6 2.4531 -4.0907 1.2004 12 17 1.9819 -3.3665 2.7061 13 6 3.2009 -5.2520 1.1976 14 6 3.5824 -5.8393 0.0011 15 6 3.2195 -5.2719 -1.2001 16 6 2.4617 -4.0948 -1.2155 17 6 2.0716 -3.4839 -2.4918 18 8 1.4145 -2.4643 -2.5005 19 1 -0.4851 0.8400 -0.0004 20 1 3.4908 -5.7053 2.1340 21 1 4.1674 -6.7471 0.0111 22 1 3.5200 -5.7337 -2.1290 23 1 2.3697 -3.9422 -3.4232 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159177107.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:21 Heat of formation + Delta-G solvation = -56.217589 kcal Electronic energy + Delta-G solvation = -13215.696683 eV Core-core repulsion = 10634.492397 eV Total energy + Delta-G solvation = -2581.204287 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.00519 -39.00935 -38.04686 -37.16887 -33.98912 -32.16101 -30.65267 -27.01195 -25.52946 -23.34532 -21.87453 -19.91448 -18.50074 -17.76241 -17.07766 -16.24245 -15.77485 -15.67044 -15.33545 -15.19186 -14.73734 -13.92150 -13.45892 -13.43372 -13.09124 -12.78168 -12.30457 -12.14965 -12.06932 -11.83295 -11.61558 -10.49035 -10.17732 -9.79556 -9.39457 -8.15202 -5.85510 -0.24560 0.29604 1.32967 1.35639 1.39960 1.49061 1.68837 2.29715 2.82402 3.19960 3.44597 3.72092 4.04390 4.20662 4.37529 4.50836 4.83096 4.95831 5.15969 5.26001 5.35793 5.43448 5.87996 6.19271 6.87067 7.26701 8.09955 9.09195 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.026863 B = 0.012298 C = 0.009468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.086521 B = 2276.247474 C = 2956.480221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.029 4.029 3 Si 0.994 3.006 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.059 0.941 9 O -0.254 6.254 10 C 0.141 3.859 11 C -0.109 4.109 12 Cl -0.079 7.079 13 C -0.070 4.070 14 C -0.135 4.135 15 C -0.038 4.038 16 C -0.241 4.241 17 C 0.360 3.640 18 O -0.472 6.472 19 H 0.258 0.742 20 H 0.159 0.841 21 H 0.185 0.815 22 H 0.187 0.813 23 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.562 -13.283 -1.486 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.223 4.223 3 Si 0.817 3.183 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.412 4.412 8 H 0.077 0.923 9 O -0.166 6.166 10 C 0.094 3.906 11 C -0.136 4.136 12 Cl -0.050 7.050 13 C -0.089 4.089 14 C -0.153 4.153 15 C -0.056 4.056 16 C -0.243 4.243 17 C 0.218 3.782 18 O -0.345 6.345 19 H 0.067 0.933 20 H 0.177 0.823 21 H 0.202 0.798 22 H 0.204 0.796 23 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.829 -12.529 -1.351 15.982 hybrid contribution -0.078 1.076 0.471 1.177 sum 9.751 -11.453 -0.881 15.068 Atomic orbital electron populations 1.70168 1.07395 1.26737 1.53099 1.26000 0.96595 1.01293 0.98434 0.84864 0.78180 0.77323 0.77951 1.18217 1.20339 1.19864 1.20795 0.89261 0.81238 1.49895 0.92329 1.83725 1.30499 1.10403 1.92002 1.19919 0.88900 0.89794 0.91941 1.21932 1.05412 0.99634 0.86608 1.98326 1.91467 1.84104 1.31137 1.21570 0.94102 0.91410 1.01782 1.21517 1.01697 1.01984 0.90068 1.21861 0.91666 0.90847 1.01206 1.21940 1.05732 1.01330 0.95294 1.24698 0.76534 0.83756 0.93178 1.90772 1.29644 1.23458 1.90599 0.93327 0.82350 0.79823 0.79583 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -62.11 13.67 21.62 0.30 -61.81 14 2 C -0.03 -1.82 5.49 84.86 0.47 -1.35 14 3 Si 0.99 48.02 29.55 68.60 2.03 50.05 14 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 14 5 H -0.28 -13.09 7.11 99.48 0.71 -12.39 14 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 14 7 C -0.34 -20.51 8.77 67.94 0.60 -19.92 14 8 H 0.06 3.48 7.76 -2.91 -0.02 3.46 14 9 O -0.25 -15.32 7.66 1.65 0.01 -15.30 14 10 C 0.14 6.67 5.60 23.00 0.13 6.79 14 11 C -0.11 -4.36 6.33 22.41 0.14 -4.22 14 12 Cl -0.08 -3.36 28.50 -2.72 -0.08 -3.44 14 13 C -0.07 -1.93 9.81 22.34 0.22 -1.71 14 14 C -0.14 -2.73 10.02 22.24 0.22 -2.51 14 15 C -0.04 -0.85 9.79 22.57 0.22 -0.63 14 16 C -0.24 -8.80 5.88 -20.05 -0.12 -8.92 14 17 C 0.36 13.23 11.44 70.05 0.80 14.04 14 18 O -0.47 -24.70 15.18 17.82 0.27 -24.43 14 19 H 0.26 16.09 8.31 -92.71 -0.77 15.32 14 20 H 0.16 3.34 8.06 -2.91 -0.02 3.32 14 21 H 0.18 1.83 8.06 -2.91 -0.02 1.80 14 22 H 0.19 2.10 8.06 -2.91 -0.02 2.08 14 23 H 0.16 3.43 8.06 -2.91 -0.02 3.40 14 Total: -1.00 -85.67 237.32 6.44 -79.23 By element: Atomic # 1 Polarization: -7.10 SS G_CDS: 1.23 Total: -5.86 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 2.68 Total: -18.43 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 0.30 Total: -61.81 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: 0.28 Total: -39.74 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Atomic # 17 Polarization: -3.36 SS G_CDS: -0.08 Total: -3.44 kcal Total: -85.67 6.44 -79.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159177107.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.016 kcal (2) G-P(sol) polarization free energy of solvation -85.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds