Wall clock time and date at job start Mon Mar 30 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86798 * 120.00786 * 2 1 4 4 H 1.48493 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46727 * 300.00259 * 3 2 1 6 6 H 1.48497 * 109.46822 * 59.99513 * 3 2 1 7 7 C 1.39915 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00288 * 197.44271 * 7 2 1 9 9 C 1.41219 * 120.00295 * 17.43969 * 7 2 1 10 10 C 1.40825 * 120.18193 * 204.79486 * 9 7 2 11 11 C 1.36448 * 119.80560 * 180.02562 * 10 9 7 12 12 C 1.39292 * 120.19266 * 0.02562 * 11 10 9 13 13 O 1.35722 * 119.81916 * 179.97438 * 12 11 10 14 14 C 1.34377 * 116.99897 * 84.87899 * 13 12 11 15 15 O 1.21250 * 120.00103 * 355.22563 * 14 13 12 16 16 Cl 1.73602 * 119.99745 * 175.22444 * 14 13 12 17 17 C 1.39287 * 120.36261 * 0.23241 * 12 11 10 18 18 C 1.36454 * 120.19063 * 359.48050 * 17 12 11 19 19 H 0.97007 * 119.99343 * 359.97438 * 1 2 3 20 20 H 1.07992 * 120.09783 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.90811 * 179.97438 * 11 10 9 22 22 H 1.08004 * 119.90426 * 179.74624 * 17 12 11 23 23 H 1.07997 * 120.09644 * 180.25149 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7027 1.3461 -0.0006 5 1 1.8840 2.3963 -1.2125 6 1 1.8840 2.3963 1.2124 7 6 2.0081 -1.2117 -0.0005 8 1 3.0509 -1.2335 0.2798 9 6 1.3506 -2.4065 -0.3676 10 6 1.8236 -3.6475 0.1008 11 6 1.1828 -4.7971 -0.2591 12 6 0.0642 -4.7457 -1.0877 13 8 -0.5670 -5.8940 -1.4413 14 6 -1.4853 -6.3738 -0.5855 15 8 -1.6557 -5.8335 0.4865 16 17 -2.4276 -7.7671 -1.0150 17 6 -0.4068 -3.5228 -1.5596 18 6 0.2189 -2.3633 -1.2045 19 1 -0.4849 0.8402 0.0004 20 1 2.6914 -3.6892 0.7422 21 1 1.5443 -5.7498 0.0988 22 1 -1.2722 -3.4919 -2.2049 23 1 -0.1501 -1.4156 -1.5680 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167060580.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:07 Heat of formation + Delta-G solvation = -78.295757 kcal Electronic energy + Delta-G solvation = -12776.207153 eV Core-core repulsion = 10194.045485 eV Total energy + Delta-G solvation = -2582.161668 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.01907 -39.42917 -38.17010 -37.74960 -35.49542 -31.76734 -31.32569 -27.55795 -24.90773 -23.22699 -22.33365 -19.74276 -19.43742 -18.89323 -17.68918 -17.11104 -16.01631 -15.71896 -15.46198 -14.62701 -14.15972 -13.91297 -13.40394 -13.15540 -12.95368 -12.78310 -12.68095 -12.62017 -12.27009 -12.19314 -11.76416 -11.30962 -11.11515 -9.70559 -9.44889 -8.81196 -6.50573 -0.48833 0.65425 0.73958 0.99328 1.40048 1.47114 1.56993 2.16093 2.48926 3.07355 3.56522 4.20400 4.25483 4.74764 4.92828 4.98771 5.10457 5.20105 5.47188 5.59030 5.83085 5.89643 6.07355 6.36087 6.54731 6.72251 6.85952 8.14685 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.072640 B = 0.006090 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.371522 B = 4596.532597 C = 4746.304138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.031 3.969 3 Si 0.993 3.007 4 H -0.252 1.252 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.089 3.911 10 C -0.230 4.230 11 C -0.071 4.071 12 C -0.099 4.099 13 O -0.245 6.245 14 C 0.485 3.515 15 O -0.490 6.490 16 Cl -0.004 7.004 17 C -0.087 4.087 18 C -0.180 4.180 19 H 0.296 0.704 20 H 0.118 0.882 21 H 0.120 0.880 22 H 0.115 0.885 23 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -4.761 -2.680 5.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.187 4.187 3 Si 0.813 3.187 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.110 0.890 9 C 0.086 3.914 10 C -0.249 4.249 11 C -0.090 4.090 12 C -0.141 4.141 13 O -0.159 6.159 14 C 0.303 3.697 15 O -0.378 6.378 16 Cl 0.021 6.979 17 C -0.106 4.106 18 C -0.199 4.199 19 H 0.107 0.893 20 H 0.136 0.864 21 H 0.138 0.862 22 H 0.133 0.867 23 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.032 -4.556 -2.365 5.236 hybrid contribution -0.119 0.419 0.179 0.471 sum -1.151 -4.137 -2.186 4.819 Atomic orbital electron populations 1.69878 1.09398 1.31593 1.32087 1.27005 0.95551 1.05251 0.90848 0.84981 0.79509 0.75136 0.79110 1.17561 1.18629 1.19003 1.20113 0.98733 0.91843 1.38624 0.88972 1.18165 0.91312 0.93461 0.88440 1.20870 1.05135 0.91871 1.07049 1.20669 0.94850 0.98471 0.94993 1.18173 0.98491 0.82857 1.14572 1.84836 1.47073 1.38684 1.45333 1.25872 0.78863 0.81574 0.83351 1.90913 1.65674 1.56624 1.24545 1.98522 1.67200 1.38224 1.93908 1.20685 0.99155 0.91370 0.99351 1.20935 1.00591 0.96461 1.01927 0.89258 0.86433 0.86204 0.86732 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.53 10.95 21.82 0.24 -39.30 14 2 C 0.03 1.46 5.14 85.24 0.44 1.90 14 3 Si 0.99 34.74 29.59 68.60 2.03 36.77 14 4 H -0.25 -8.55 7.11 99.48 0.71 -7.84 14 5 H -0.26 -8.80 7.11 99.48 0.71 -8.10 14 6 H -0.27 -8.97 7.11 99.48 0.71 -8.26 14 7 C -0.47 -23.26 9.04 23.41 0.21 -23.05 14 8 H 0.09 4.33 7.90 -2.91 -0.02 4.30 14 9 C 0.09 4.63 5.57 -21.28 -0.12 4.51 14 10 C -0.23 -10.98 9.74 22.48 0.22 -10.76 14 11 C -0.07 -3.23 9.88 22.11 0.22 -3.01 14 12 C -0.10 -4.54 4.96 22.78 0.11 -4.43 14 13 O -0.25 -9.90 10.04 5.67 0.06 -9.85 14 14 C 0.48 18.38 8.60 113.37 0.97 19.35 14 15 O -0.49 -22.02 16.91 20.65 0.35 -21.67 14 16 Cl 0.00 -0.12 29.32 -2.72 -0.08 -0.20 14 17 C -0.09 -4.12 9.92 22.11 0.22 -3.90 14 18 C -0.18 -9.20 8.64 22.49 0.19 -9.01 14 19 H 0.30 12.93 8.30 -92.70 -0.77 12.16 14 20 H 0.12 5.11 8.06 -2.91 -0.02 5.09 14 21 H 0.12 4.75 8.06 -2.91 -0.02 4.73 14 22 H 0.11 4.88 8.06 -2.91 -0.02 4.86 14 23 H 0.12 6.10 6.16 -2.91 -0.02 6.08 14 Total: -1.00 -55.93 236.16 6.31 -49.63 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.24 Total: 13.02 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 2.47 Total: -28.39 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.24 Total: -39.30 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: 0.41 Total: -31.52 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -55.93 6.31 -49.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167060580.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.669 kcal (2) G-P(sol) polarization free energy of solvation -55.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds