Wall clock time and date at job start Mon Mar 30 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86798 * 120.00505 * 2 1 4 4 H 1.48510 * 109.46879 * 84.81821 * 3 2 1 5 5 H 1.48494 * 109.47423 * 204.81716 * 3 2 1 6 6 H 1.48493 * 109.47005 * 324.81939 * 3 2 1 7 7 C 1.39922 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99841 * 333.88407 * 7 2 1 9 9 C 1.41134 * 120.00280 * 153.88846 * 7 2 1 10 10 C 1.41139 * 120.26348 * 138.57337 * 9 7 2 11 11 C 1.38868 * 119.62690 * 179.97438 * 10 9 7 12 12 C 1.38769 * 120.00355 * 359.97438 * 11 10 9 13 13 C 1.38708 * 120.60962 * 359.97438 * 12 11 10 14 14 C 1.37635 * 120.45358 * 359.73845 * 13 12 11 15 15 Cl 1.73606 * 120.08297 * 180.25808 * 14 13 12 16 16 O 1.36594 * 108.61192 * 179.97438 * 11 10 9 17 17 C 1.43997 * 105.43892 * 17.25827 * 16 11 10 18 18 O 1.36205 * 131.55336 * 359.97438 * 10 9 7 19 19 H 0.96996 * 119.99472 * 359.97438 * 1 2 3 20 20 H 1.07999 * 119.69134 * 179.97438 * 12 11 10 21 21 H 1.08007 * 119.77209 * 180.02562 * 13 12 11 22 22 H 1.09003 * 110.58401 * 91.50950 * 17 16 11 23 23 H 1.08996 * 110.58864 * 214.27390 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.3809 2.1095 1.3945 5 1 3.5909 1.4109 -0.5876 6 1 1.4995 2.6185 -0.8066 7 6 2.0083 -1.2118 -0.0005 8 1 1.5509 -2.0996 0.4108 9 6 3.3117 -1.2741 -0.5385 10 6 4.3163 -2.0191 0.1155 11 6 5.5940 -2.0718 -0.4258 12 6 5.8772 -1.3947 -1.6035 13 6 4.8934 -0.6619 -2.2509 14 6 3.6181 -0.5995 -1.7371 15 17 2.3925 0.3151 -2.5589 16 8 6.3779 -2.8460 0.3816 17 6 5.4614 -3.5968 1.2000 18 8 4.2930 -2.7575 1.2598 19 1 -0.4849 0.8401 0.0004 20 1 6.8728 -1.4387 -2.0198 21 1 5.1286 -0.1404 -3.1671 22 1 5.2234 -4.5519 0.7316 23 1 5.8760 -3.7523 2.1960 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214829772.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:49 Heat of formation + Delta-G solvation = -44.260308 kcal Electronic energy + Delta-G solvation = -13498.253779 eV Core-core repulsion = 10917.567999 eV Total energy + Delta-G solvation = -2580.685780 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.08780 -37.13506 -35.32632 -35.12549 -33.58801 -30.40572 -28.76095 -25.35952 -24.95721 -21.82493 -21.16932 -18.12591 -17.02675 -16.53179 -16.26084 -15.56004 -14.80148 -13.92802 -13.35297 -13.29773 -12.87731 -12.71368 -12.27209 -12.04688 -11.74141 -11.66591 -11.12879 -10.57392 -10.32575 -9.95337 -9.70318 -9.18956 -9.04185 -7.65943 -7.12412 -7.00494 -4.58567 2.14141 2.30378 3.08562 3.15574 3.24263 3.34485 3.78428 4.00685 4.28501 4.40749 4.97442 5.31017 5.49206 5.72216 5.88307 6.09229 6.31160 6.64231 6.99485 7.02455 7.18171 7.26723 7.43851 7.96549 8.22522 8.39617 8.61507 9.95733 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.033879 B = 0.013473 C = 0.011077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.266333 B = 2077.780469 C = 2527.195400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.106 3.894 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.234 1.234 6 H -0.276 1.276 7 C -0.446 4.446 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.061 4.061 11 C 0.059 3.941 12 C -0.212 4.212 13 C -0.060 4.060 14 C -0.123 4.123 15 Cl -0.079 7.079 16 O -0.326 6.326 17 C 0.212 3.788 18 O -0.301 6.301 19 H 0.287 0.713 20 H 0.115 0.885 21 H 0.120 0.880 22 H 0.066 0.934 23 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -0.785 -1.540 6.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.117 4.117 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.157 1.157 6 H -0.201 1.201 7 C -0.472 4.472 8 H 0.117 0.883 9 C 0.111 3.889 10 C -0.105 4.105 11 C 0.015 3.985 12 C -0.232 4.232 13 C -0.079 4.079 14 C -0.150 4.150 15 Cl -0.051 7.051 16 O -0.243 6.243 17 C 0.099 3.901 18 O -0.218 6.218 19 H 0.098 0.902 20 H 0.133 0.867 21 H 0.138 0.862 22 H 0.083 0.917 23 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.836 -0.656 -1.406 6.039 hybrid contribution 0.113 0.554 0.114 0.576 sum 5.949 -0.102 -1.293 6.088 Atomic orbital electron populations 1.69753 1.08279 1.30571 1.31783 1.26120 0.94573 1.01543 0.89468 0.86382 0.83527 0.80142 0.78722 1.20818 1.15666 1.20119 1.19162 0.95654 0.97611 1.34808 0.88344 1.16328 0.91599 0.91252 0.89754 1.19656 0.93471 1.08232 0.89170 1.19667 0.88342 0.97317 0.93135 1.19142 0.99881 1.08549 0.95664 1.20237 0.90719 0.97981 0.99007 1.20289 0.89690 1.08480 0.96554 1.98175 1.56741 1.72718 1.77435 1.87217 1.31739 1.55500 1.49796 1.25357 0.77289 0.91688 0.95748 1.87215 1.44263 1.52728 1.37601 0.90241 0.86711 0.86215 0.91662 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.47 13.93 55.55 0.77 -19.70 14 2 C 0.11 2.77 4.17 -17.33 -0.07 2.69 14 3 Si 0.89 20.82 24.30 -169.99 -4.13 16.69 14 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 5 H -0.23 -5.52 5.47 56.52 0.31 -5.21 14 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 7 C -0.45 -12.10 9.20 -37.85 -0.35 -12.45 14 8 H 0.10 2.84 8.06 -52.48 -0.42 2.41 14 9 C 0.11 2.93 4.68 -106.69 -0.50 2.44 14 10 C -0.06 -1.48 6.90 -38.25 -0.26 -1.75 14 11 C 0.06 1.32 7.14 -39.15 -0.28 1.04 14 12 C -0.21 -4.35 10.05 -39.21 -0.39 -4.75 14 13 C -0.06 -1.25 9.79 -39.63 -0.39 -1.64 14 14 C -0.12 -2.87 4.36 -38.79 -0.17 -3.04 14 15 Cl -0.08 -1.77 22.72 -51.86 -1.18 -2.94 14 16 O -0.33 -6.55 11.41 -46.01 -0.52 -7.08 14 17 C 0.21 3.70 8.90 101.05 0.90 4.60 14 18 O -0.30 -6.86 11.38 -44.74 -0.51 -7.37 14 19 H 0.29 6.84 8.30 -40.82 -0.34 6.50 14 20 H 0.11 2.02 8.06 -52.49 -0.42 1.60 14 21 H 0.12 2.09 8.06 -52.48 -0.42 1.67 14 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 14 23 H 0.11 1.53 8.14 -51.93 -0.42 1.11 14 LS Contribution 217.40 15.07 3.28 3.28 Total: -1.00 -28.09 217.40 -5.15 -33.24 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: -1.34 Total: -3.25 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.52 Total: -12.86 kcal Atomic # 7 Polarization: -20.47 SS G_CDS: 0.77 Total: -19.70 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.03 Total: -14.45 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.13 Total: 16.69 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.18 Total: -2.94 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.09 -5.15 -33.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214829772.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.017 kcal (2) G-P(sol) polarization free energy of solvation -28.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds