Wall clock time and date at job start Mon Mar 30 2020 03:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86805 * 119.99966 * 2 1 4 4 H 1.48493 * 109.47133 * 275.02771 * 3 2 1 5 5 H 1.48498 * 109.46961 * 35.03303 * 3 2 1 6 6 H 1.48504 * 109.46581 * 155.02760 * 3 2 1 7 7 C 1.39558 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99969 * 347.91166 * 7 2 1 9 9 N 1.36415 * 120.00106 * 167.91428 * 7 2 1 10 10 N 1.29003 * 120.00088 * 316.18005 * 9 7 2 11 11 O 1.21796 * 119.99818 * 354.69636 * 10 9 7 12 12 C 1.39859 * 120.00469 * 136.18474 * 9 7 2 13 13 C 1.38962 * 120.06449 * 359.97399 * 12 9 7 14 14 C 1.38076 * 119.94952 * 180.02562 * 13 12 9 15 15 C 1.38305 * 120.09118 * 0.02562 * 14 13 12 16 16 C 1.38394 * 120.13548 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 119.97610 * 180.02562 * 16 15 14 18 18 C 1.38233 * 120.04807 * 0.02562 * 16 15 14 19 19 H 0.97008 * 120.00143 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.02842 * 0.02562 * 13 12 9 21 21 H 1.08004 * 119.95727 * 180.02562 * 14 13 12 22 22 H 1.07999 * 119.93349 * 180.02562 * 15 14 13 23 23 H 1.08002 * 120.03795 * 180.27570 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3844 2.1078 -1.3946 5 1 1.4978 2.6196 0.8037 6 1 3.5898 1.4117 0.5911 7 6 2.0070 -1.2086 -0.0005 8 1 1.4849 -2.1336 0.1949 9 7 3.3484 -1.2216 -0.2479 10 7 3.8348 -0.5068 -1.2053 11 8 3.0882 0.1038 -1.9491 12 6 4.1966 -2.0100 0.5364 13 6 3.6744 -2.7803 1.5684 14 6 4.5140 -3.5573 2.3415 15 6 5.8740 -3.5697 2.0905 16 6 6.3980 -2.8040 1.0637 17 17 8.1057 -2.8231 0.7519 18 6 5.5627 -2.0239 0.2861 19 1 -0.4851 0.8401 0.0004 20 1 2.6126 -2.7712 1.7656 21 1 4.1082 -4.1564 3.1433 22 1 6.5283 -4.1787 2.6966 23 1 5.9712 -1.4299 -0.5180 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224653071.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:23 Heat of formation + Delta-G solvation = 25.177508 kcal Electronic energy + Delta-G solvation = -13145.454386 eV Core-core repulsion = 10600.072406 eV Total energy + Delta-G solvation = -2545.381979 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.82037 -39.91492 -37.64996 -36.57465 -34.79725 -31.99575 -31.09799 -28.61325 -25.55304 -23.55768 -22.38155 -20.39258 -19.34384 -18.09341 -17.28724 -16.62722 -16.14257 -16.04125 -15.70717 -14.92316 -14.74238 -14.55882 -13.98312 -13.65641 -12.96413 -12.83821 -12.65471 -12.39802 -12.18436 -11.98350 -11.22419 -11.11380 -10.31291 -9.91129 -9.26938 -8.79269 -6.80074 -0.26763 0.11424 0.94667 1.00107 1.25949 1.31082 1.44953 2.09223 2.18903 2.54454 2.81050 3.78881 3.97649 4.08863 4.28028 4.40360 4.70307 4.96432 5.11373 5.28878 5.38279 5.43345 5.69934 6.04322 6.28326 6.73644 7.90957 8.25407 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.040507 B = 0.009191 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.073213 B = 3045.623030 C = 3441.729444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.074 3.926 3 Si 0.960 3.040 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.407 4.407 8 H 0.104 0.896 9 N -0.206 5.206 10 N -0.132 5.132 11 O -0.234 6.234 12 C 0.127 3.873 13 C -0.125 4.125 14 C -0.071 4.071 15 C -0.114 4.114 16 C -0.020 4.020 17 Cl -0.059 7.059 18 C -0.143 4.143 19 H 0.296 0.704 20 H 0.139 0.861 21 H 0.182 0.818 22 H 0.173 0.827 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 -6.820 7.501 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.142 4.142 3 Si 0.789 3.211 4 H -0.178 1.178 5 H -0.209 1.209 6 H -0.217 1.217 7 C -0.541 4.541 8 H 0.121 0.879 9 N -0.036 5.036 10 N 0.126 4.874 11 O -0.454 6.454 12 C 0.033 3.967 13 C -0.147 4.147 14 C -0.089 4.089 15 C -0.133 4.133 16 C -0.047 4.047 17 Cl -0.030 7.030 18 C -0.165 4.165 19 H 0.107 0.893 20 H 0.157 0.843 21 H 0.199 0.801 22 H 0.191 0.809 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.789 -6.921 7.586 15.634 hybrid contribution -0.780 1.019 -0.568 1.403 sum 11.009 -5.902 7.018 14.327 Atomic orbital electron populations 1.69439 1.07587 1.31008 1.39705 1.25893 0.95889 1.01901 0.90509 0.85593 0.77390 0.79163 0.78993 1.17808 1.20926 1.21748 1.19728 0.82402 0.97042 1.54968 0.87890 1.44615 1.07079 1.31382 1.20515 1.76756 1.24099 0.96732 0.89839 1.93585 1.65553 1.46014 1.40209 1.18415 0.89472 0.95099 0.93719 1.21401 1.02328 0.96630 0.94309 1.21409 0.91859 0.96896 0.98738 1.21473 0.96213 0.99130 0.96522 1.20708 0.85145 1.00266 0.98579 1.98354 1.11443 1.97726 1.95435 1.20739 0.91120 1.02255 1.02364 0.89338 0.84301 0.80105 0.80942 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.02 13.93 21.75 0.30 -46.72 14 2 C 0.07 4.12 5.00 85.15 0.43 4.54 14 3 Si 0.96 48.61 24.67 68.60 1.69 50.31 14 4 H -0.25 -13.17 6.47 99.48 0.64 -12.53 14 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 14 6 H -0.29 -15.22 7.10 99.48 0.71 -14.52 14 7 C -0.41 -22.40 8.53 84.30 0.72 -21.68 14 8 H 0.10 5.74 7.30 -2.91 -0.02 5.72 14 9 N -0.21 -10.61 2.90 -183.82 -0.53 -11.14 14 10 N -0.13 -7.12 10.00 37.02 0.37 -6.75 14 11 O -0.23 -13.51 13.76 -5.23 -0.07 -13.58 14 12 C 0.13 5.32 6.57 38.19 0.25 5.57 14 13 C -0.13 -4.29 9.27 22.40 0.21 -4.08 14 14 C -0.07 -1.67 10.04 22.25 0.22 -1.44 14 15 C -0.11 -2.57 9.83 22.32 0.22 -2.35 14 16 C -0.02 -0.57 6.32 22.31 0.14 -0.43 14 17 Cl -0.06 -1.45 28.95 -2.72 -0.08 -1.53 14 18 C -0.14 -5.29 9.26 22.42 0.21 -5.08 14 19 H 0.30 15.09 8.30 -92.70 -0.77 14.32 14 20 H 0.14 4.98 6.60 -2.91 -0.02 4.96 14 21 H 0.18 2.66 8.06 -2.91 -0.02 2.64 14 22 H 0.17 2.54 8.06 -2.91 -0.02 2.51 14 23 H 0.13 4.94 7.40 -2.91 -0.02 4.92 14 Total: -1.00 -63.96 225.42 5.25 -58.70 By element: Atomic # 1 Polarization: -5.51 SS G_CDS: 1.18 Total: -4.33 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 2.39 Total: -24.95 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: 0.14 Total: -64.62 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.07 Total: -13.58 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.69 Total: 50.31 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -63.96 5.25 -58.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224653071.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.879 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds