Wall clock time and date at job start Mon Mar 30 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47260 * 2 1 4 4 C 1.50698 * 109.47479 * 120.00335 * 2 1 3 5 5 H 1.07999 * 119.99682 * 84.92849 * 4 2 1 6 6 C 1.37875 * 120.00017 * 264.94038 * 4 2 1 7 7 N 1.31515 * 120.00011 * 179.66289 * 6 4 2 8 8 Si 1.86807 * 120.00142 * 359.65435 * 6 4 2 9 9 H 1.48500 * 109.47090 * 269.96128 * 8 6 4 10 10 H 1.48501 * 109.46816 * 29.96044 * 8 6 4 11 11 H 1.48501 * 109.47056 * 149.96060 * 8 6 4 12 12 N 1.46897 * 109.46985 * 240.00699 * 2 1 3 13 13 C 1.46898 * 111.00546 * 84.99705 * 12 2 1 14 14 C 1.52997 * 109.47218 * 180.02562 * 13 12 2 15 15 C 1.52997 * 109.47070 * 60.00124 * 14 13 12 16 16 C 1.52999 * 109.47271 * 299.99951 * 14 13 12 17 17 C 1.52997 * 109.47271 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47220 * 59.99989 * 17 16 14 19 19 C 1.52995 * 109.47209 * 300.00456 * 18 17 16 20 20 C 1.52997 * 109.47402 * 59.99655 * 19 18 17 21 21 H 1.09005 * 109.46630 * 294.34025 * 1 2 3 22 22 H 1.09003 * 109.47263 * 54.33923 * 1 2 3 23 23 H 1.08995 * 109.47247 * 174.33793 * 1 2 3 24 24 H 0.96998 * 119.99976 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99747 * 208.95764 * 12 2 1 26 26 H 1.08996 * 109.47245 * 300.00193 * 13 12 2 27 27 H 1.09000 * 109.47033 * 59.99952 * 13 12 2 28 28 H 1.09001 * 109.47516 * 59.99980 * 15 14 13 29 29 H 1.09006 * 109.47075 * 180.02562 * 15 14 13 30 30 H 1.08997 * 109.47372 * 299.99622 * 15 14 13 31 31 H 1.09000 * 109.47074 * 300.00128 * 16 14 13 32 32 H 1.09006 * 109.47050 * 60.00152 * 16 14 13 33 33 H 1.09000 * 109.47177 * 300.00066 * 17 16 14 34 34 H 1.08996 * 109.47151 * 180.02562 * 17 16 14 35 35 H 1.08999 * 109.47502 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.46983 * 59.99958 * 18 17 16 37 37 H 1.09000 * 109.46742 * 299.99650 * 19 18 17 38 38 H 1.09002 * 109.47567 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.46967 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47177 * 60.00261 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.1345 -1.7856 1.2292 6 6 2.3615 0.0121 2.3576 7 7 2.7937 -0.6085 3.4335 8 14 2.1938 1.8726 2.3564 9 1 3.4666 2.4841 1.8966 10 1 1.0945 2.2699 1.4405 11 1 1.8871 2.3428 3.7312 12 7 2.0196 -0.6923 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 1.6450 -1.6886 -3.8953 16 6 3.9920 -1.0861 -3.2864 17 6 4.5043 -1.8424 -4.5138 18 6 4.5695 -0.8897 -5.7093 19 6 3.1725 -0.3365 -5.9974 20 6 2.6602 0.4197 -4.7700 21 1 -0.3633 0.4236 0.9364 22 1 -0.3634 0.5991 -0.8350 23 1 -0.3633 -1.0226 -0.1014 24 1 3.0249 -0.1002 4.2267 25 1 2.9172 -1.1204 -1.0288 26 1 1.0870 0.6165 -2.5525 27 1 2.7588 1.0463 -2.1182 28 1 0.6497 -1.2946 -4.1006 29 1 2.0104 -2.2273 -4.7696 30 1 1.5984 -2.3677 -3.0440 31 1 4.6687 -0.2627 -3.0579 32 1 3.9455 -1.7652 -2.4350 33 1 3.8275 -2.6657 -4.7418 34 1 5.4994 -2.2368 -4.3083 35 1 4.9340 -1.4286 -6.5838 36 1 5.2464 -0.0663 -5.4812 37 1 2.4957 -1.1599 -6.2255 38 1 3.2188 0.3418 -6.8494 39 1 1.6647 0.8134 -4.9752 40 1 3.3371 1.2431 -4.5419 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229573075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:58 Heat of formation + Delta-G solvation = -34.674631 kcal Electronic energy + Delta-G solvation = -16495.344789 eV Core-core repulsion = 14115.416550 eV Total energy + Delta-G solvation = -2379.928238 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.41568 -35.81665 -33.01098 -31.60657 -30.68194 -28.68365 -26.59963 -25.37005 -24.10364 -22.45519 -20.73141 -19.53747 -18.08809 -16.95450 -15.57472 -14.99218 -14.58232 -14.37882 -13.87295 -13.76194 -13.12667 -12.95966 -12.55867 -12.48334 -12.10390 -11.99270 -11.63456 -11.33563 -11.26274 -11.02893 -10.83113 -10.78467 -10.69841 -10.58429 -10.27827 -9.94352 -9.87342 -9.67985 -9.62858 -8.90955 -8.60574 -7.32303 -6.10144 -4.10513 3.25030 3.34406 3.37959 4.39116 4.76357 4.82346 4.89122 5.09903 5.28762 5.31916 5.48117 5.55005 5.56404 5.64691 5.70355 5.74764 5.88291 6.07688 6.10514 6.12647 6.18626 6.19958 6.29251 6.34381 6.40512 6.45096 6.48026 6.60308 6.68980 6.75971 6.84401 6.90140 6.96040 7.45715 7.66101 8.04289 8.47062 8.70708 8.99457 9.54598 11.02985 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039337 B = 0.006660 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.626992 B = 4203.474244 C = 4302.176950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.179 3.821 3 H 0.002 0.998 4 C -0.516 4.516 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.279 1.279 10 H -0.264 1.264 11 H -0.288 1.288 12 N -0.681 5.681 13 C 0.067 3.933 14 C -0.056 4.056 15 C -0.131 4.131 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.109 4.109 21 H 0.042 0.958 22 H 0.016 0.984 23 H 0.050 0.950 24 H 0.264 0.736 25 H 0.339 0.661 26 H 0.060 0.940 27 H 0.015 0.985 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 1.173 -16.958 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.070 3.930 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.205 1.205 10 H -0.188 1.188 11 H -0.214 1.214 12 N -0.313 5.313 13 C -0.063 4.063 14 C -0.056 4.056 15 C -0.188 4.188 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.147 4.147 21 H 0.061 0.939 22 H 0.035 0.965 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.158 0.842 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.779 0.954 -16.915 16.960 hybrid contribution 0.720 1.678 0.447 1.880 sum 1.499 2.631 -16.468 16.744 Atomic orbital electron populations 1.21850 0.98280 1.00105 0.98027 1.19550 0.92298 0.92466 0.88659 0.98056 1.21093 1.43287 0.95872 0.95219 0.90296 1.25023 0.94339 0.98122 0.95511 1.69900 1.44665 1.35836 1.03204 0.86896 0.78999 0.86604 0.77298 1.20531 1.18819 1.21373 1.60717 1.33019 1.32610 1.04996 1.21981 0.99166 0.93782 0.91380 1.20530 0.95248 0.95684 0.94163 1.21800 0.97815 0.97976 1.01203 1.21603 0.95667 0.99870 0.97802 1.21559 1.00679 0.98291 0.95136 1.21522 0.97064 0.99049 0.97900 1.21546 0.96811 0.99829 0.97401 1.21571 1.00684 0.97794 0.94627 0.93939 0.96458 0.93095 0.92643 0.84159 0.92127 0.96677 0.93597 0.93487 0.91146 0.92581 0.90967 0.91693 0.92525 0.92675 0.92391 0.91723 0.92730 0.92288 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.32 37.16 0.35 -2.43 16 2 C 0.18 4.27 2.17 -68.87 -0.15 4.12 16 3 H 0.00 0.04 5.05 -51.93 -0.26 -0.22 16 4 C -0.52 -14.44 8.84 -34.44 -0.30 -14.75 16 5 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 8 Si 0.87 21.70 26.83 -169.99 -4.56 17.14 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.26 -6.33 6.77 56.52 0.38 -5.94 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 N -0.68 -13.96 5.51 -107.96 -0.60 -14.56 16 13 C 0.07 1.16 4.45 -3.83 -0.02 1.15 16 14 C -0.06 -0.79 0.59 -154.51 -0.09 -0.88 16 15 C -0.13 -1.81 7.62 37.16 0.28 -1.52 16 16 C -0.11 -1.54 4.40 -26.73 -0.12 -1.66 16 17 C -0.12 -1.38 5.65 -26.73 -0.15 -1.53 16 18 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 19 C -0.12 -1.25 5.65 -26.74 -0.15 -1.40 16 20 C -0.11 -1.33 4.73 -26.73 -0.13 -1.45 16 21 H 0.04 0.96 7.97 -51.93 -0.41 0.55 16 22 H 0.02 0.33 7.60 -51.93 -0.39 -0.06 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.34 7.08 6.39 -39.29 -0.25 6.83 16 26 H 0.06 1.06 7.55 -51.93 -0.39 0.67 16 27 H 0.02 0.28 8.06 -51.93 -0.42 -0.14 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.57 4.81 -51.93 -0.25 0.32 16 30 H 0.07 1.10 7.60 -51.93 -0.39 0.70 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.09 6.57 -51.93 -0.34 0.75 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 296.20 15.07 4.46 4.46 Total: -1.00 -28.78 296.20 -7.82 -36.60 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.17 Total: 2.68 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.73 Total: -19.75 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.18 Total: -41.13 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.56 Total: 17.14 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.78 -7.82 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229573075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.927 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds