Wall clock time and date at job start Mon Mar 30 2020 02:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47260 * 2 1 4 4 C 1.50698 * 109.47479 * 120.00335 * 2 1 3 5 5 H 1.07999 * 119.99682 * 84.92849 * 4 2 1 6 6 C 1.37875 * 120.00017 * 264.94038 * 4 2 1 7 7 N 1.31515 * 120.00011 * 179.66289 * 6 4 2 8 8 Si 1.86807 * 120.00142 * 359.65435 * 6 4 2 9 9 H 1.48500 * 109.47090 * 269.96128 * 8 6 4 10 10 H 1.48501 * 109.46816 * 29.96044 * 8 6 4 11 11 H 1.48501 * 109.47056 * 149.96060 * 8 6 4 12 12 N 1.46897 * 109.46985 * 240.00699 * 2 1 3 13 13 C 1.46898 * 111.00546 * 84.99705 * 12 2 1 14 14 C 1.52997 * 109.47218 * 180.02562 * 13 12 2 15 15 C 1.52997 * 109.47070 * 60.00124 * 14 13 12 16 16 C 1.52999 * 109.47271 * 299.99951 * 14 13 12 17 17 C 1.52997 * 109.47271 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47220 * 59.99989 * 17 16 14 19 19 C 1.52995 * 109.47209 * 300.00456 * 18 17 16 20 20 C 1.52997 * 109.47402 * 59.99655 * 19 18 17 21 21 H 1.09005 * 109.46630 * 294.34025 * 1 2 3 22 22 H 1.09003 * 109.47263 * 54.33923 * 1 2 3 23 23 H 1.08995 * 109.47247 * 174.33793 * 1 2 3 24 24 H 0.96998 * 119.99976 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99747 * 208.95764 * 12 2 1 26 26 H 1.08996 * 109.47245 * 300.00193 * 13 12 2 27 27 H 1.09000 * 109.47033 * 59.99952 * 13 12 2 28 28 H 1.09001 * 109.47516 * 59.99980 * 15 14 13 29 29 H 1.09006 * 109.47075 * 180.02562 * 15 14 13 30 30 H 1.08997 * 109.47372 * 299.99622 * 15 14 13 31 31 H 1.09000 * 109.47074 * 300.00128 * 16 14 13 32 32 H 1.09006 * 109.47050 * 60.00152 * 16 14 13 33 33 H 1.09000 * 109.47177 * 300.00066 * 17 16 14 34 34 H 1.08996 * 109.47151 * 180.02562 * 17 16 14 35 35 H 1.08999 * 109.47502 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.46983 * 59.99958 * 18 17 16 37 37 H 1.09000 * 109.46742 * 299.99650 * 19 18 17 38 38 H 1.09002 * 109.47567 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.46967 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47177 * 60.00261 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.1345 -1.7856 1.2292 6 6 2.3615 0.0121 2.3576 7 7 2.7937 -0.6085 3.4335 8 14 2.1938 1.8726 2.3564 9 1 3.4666 2.4841 1.8966 10 1 1.0945 2.2699 1.4405 11 1 1.8871 2.3428 3.7312 12 7 2.0196 -0.6923 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 1.6450 -1.6886 -3.8953 16 6 3.9920 -1.0861 -3.2864 17 6 4.5043 -1.8424 -4.5138 18 6 4.5695 -0.8897 -5.7093 19 6 3.1725 -0.3365 -5.9974 20 6 2.6602 0.4197 -4.7700 21 1 -0.3633 0.4236 0.9364 22 1 -0.3634 0.5991 -0.8350 23 1 -0.3633 -1.0226 -0.1014 24 1 3.0249 -0.1002 4.2267 25 1 2.9172 -1.1204 -1.0288 26 1 1.0870 0.6165 -2.5525 27 1 2.7588 1.0463 -2.1182 28 1 0.6497 -1.2946 -4.1006 29 1 2.0104 -2.2273 -4.7696 30 1 1.5984 -2.3677 -3.0440 31 1 4.6687 -0.2627 -3.0579 32 1 3.9455 -1.7652 -2.4350 33 1 3.8275 -2.6657 -4.7418 34 1 5.4994 -2.2368 -4.3083 35 1 4.9340 -1.4286 -6.5838 36 1 5.2464 -0.0663 -5.4812 37 1 2.4957 -1.1599 -6.2255 38 1 3.2188 0.3418 -6.8494 39 1 1.6647 0.8134 -4.9752 40 1 3.3371 1.2431 -4.5419 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229573075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:57 Heat of formation + Delta-G solvation = -51.793317 kcal Electronic energy + Delta-G solvation = -16496.087111 eV Core-core repulsion = 14115.416550 eV Total energy + Delta-G solvation = -2380.670560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51973 -37.47627 -34.72342 -33.27632 -31.66747 -30.28406 -27.69974 -27.35178 -25.57301 -23.45987 -21.87219 -21.32222 -19.31057 -18.90176 -17.16523 -16.27591 -15.87658 -15.80874 -15.28768 -15.10698 -14.63211 -14.37979 -14.14182 -13.93591 -13.49955 -13.05834 -13.02528 -12.81084 -12.71792 -12.60494 -12.31834 -12.15694 -11.98597 -11.83657 -11.79341 -11.73778 -11.11175 -10.96977 -10.84184 -10.72130 -10.65387 -9.01848 -8.32703 -6.37912 1.28665 1.31851 1.43102 2.29969 3.01173 3.57432 3.82611 3.87056 3.94390 4.26484 4.43255 4.49766 4.51022 4.55818 4.60092 4.71027 4.76334 4.82681 4.87025 4.89324 4.98254 5.03232 5.08555 5.16316 5.22122 5.23324 5.26517 5.33699 5.37655 5.45083 5.52598 5.54897 5.62106 5.71113 5.79489 6.06172 6.56633 6.69906 6.87906 7.31870 8.84080 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039337 B = 0.006660 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.626992 B = 4203.474244 C = 4302.176950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.181 3.819 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.037 0.963 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.939 3.061 9 H -0.272 1.272 10 H -0.247 1.247 11 H -0.283 1.283 12 N -0.680 5.680 13 C 0.067 3.933 14 C -0.051 4.051 15 C -0.125 4.125 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.106 4.106 21 H 0.035 0.965 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.266 0.734 25 H 0.334 0.666 26 H 0.064 0.936 27 H 0.008 0.992 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 2.599 -19.410 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.055 0.945 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.763 3.237 9 H -0.198 1.198 10 H -0.170 1.170 11 H -0.209 1.209 12 N -0.311 5.311 13 C -0.063 4.063 14 C -0.051 4.051 15 C -0.182 4.182 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.152 4.152 20 C -0.144 4.144 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.153 0.847 26 H 0.082 0.918 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.463 2.376 -19.394 19.545 hybrid contribution 0.835 1.136 1.198 1.850 sum 1.298 3.511 -18.196 18.577 Atomic orbital electron populations 1.21746 0.96811 1.00399 0.98801 1.19458 0.93398 0.91807 0.88190 0.98337 1.21297 1.43010 0.94232 0.97210 0.94506 1.25860 0.94090 1.03264 0.94976 1.70043 1.46377 1.37957 1.04124 0.85856 0.79678 0.80354 0.77780 1.19777 1.17021 1.20916 1.60665 1.32767 1.33002 1.04705 1.22094 0.99391 0.93414 0.91397 1.20491 0.95127 0.95962 0.93553 1.21742 0.97976 0.97491 1.01035 1.21581 0.95657 0.99444 0.98324 1.21536 1.00857 0.98379 0.94557 1.21521 0.97188 0.98824 0.97794 1.21537 0.96679 1.00084 0.96928 1.21547 1.01186 0.97347 0.94319 0.94638 0.93708 0.93516 0.92450 0.84749 0.91800 0.97350 0.93371 0.91481 0.93508 0.93277 0.93161 0.91420 0.92061 0.90908 0.92515 0.91302 0.91044 0.91713 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 9.32 71.98 0.67 -4.49 16 2 C 0.18 8.56 2.17 44.17 0.10 8.66 16 3 H 0.00 -0.05 5.05 -2.39 -0.01 -0.06 16 4 C -0.52 -29.78 8.84 25.60 0.23 -29.55 16 5 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 6 C 0.02 0.94 5.47 84.65 0.46 1.40 16 7 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 8 Si 0.94 44.58 26.83 68.60 1.84 46.42 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.25 -10.95 6.77 99.48 0.67 -10.27 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 N -0.68 -27.90 5.51 -495.47 -2.73 -30.63 16 13 C 0.07 2.24 4.45 86.30 0.38 2.62 16 14 C -0.05 -1.36 0.59 -52.18 -0.03 -1.39 16 15 C -0.13 -3.26 7.62 71.98 0.55 -2.71 16 16 C -0.11 -3.02 4.40 30.59 0.13 -2.88 16 17 C -0.12 -2.46 5.65 30.59 0.17 -2.28 16 18 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16 19 C -0.11 -2.02 5.65 30.59 0.17 -1.85 16 20 C -0.11 -2.30 4.73 30.59 0.14 -2.16 16 21 H 0.03 1.55 7.97 -2.38 -0.02 1.53 16 22 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 25 H 0.33 14.32 6.39 -89.69 -0.57 13.75 16 26 H 0.06 2.10 7.55 -2.39 -0.02 2.09 16 27 H 0.01 0.29 8.06 -2.39 -0.02 0.27 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.46 4.81 -2.38 -0.01 1.45 16 30 H 0.05 1.43 7.60 -2.39 -0.02 1.41 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.55 6.57 -2.38 -0.02 1.54 16 33 H 0.07 1.40 6.43 -2.39 -0.02 1.38 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.18 6.43 -2.39 -0.02 1.16 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -62.28 296.20 2.96 -59.33 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.38 Total: 20.16 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.16 Total: -36.51 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -2.43 Total: -89.39 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.84 Total: 46.42 kcal Total: -62.28 2.96 -59.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229573075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.534 kcal (2) G-P(sol) polarization free energy of solvation -62.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds