Wall clock time and date at job start Mon Mar 30 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47047 * 239.99922 * 3 2 1 5 5 H 1.48492 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46952 * 120.00222 * 3 2 1 7 7 C 1.40238 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00471 * 197.74057 * 7 2 1 9 9 C 1.41112 * 119.99603 * 17.74060 * 7 2 1 10 10 C 1.40944 * 120.08861 * 24.79869 * 9 7 2 11 11 C 1.36247 * 119.92868 * 180.25210 * 10 9 7 12 12 C 1.40118 * 120.11711 * 359.50303 * 11 10 9 13 13 C 1.47435 * 119.91338 * 180.23054 * 12 11 10 14 14 O 1.21514 * 120.00519 * 179.97438 * 13 12 11 15 15 O 1.34784 * 119.99939 * 0.02562 * 13 12 11 16 16 C 1.40165 * 120.17273 * 0.25197 * 12 11 10 17 17 Cl 1.73603 * 119.96256 * 180.02562 * 16 12 11 18 18 C 1.36481 * 120.07328 * 0.02562 * 16 12 11 19 19 H 0.96996 * 120.00010 * 359.97438 * 1 2 3 20 20 H 1.07995 * 120.03486 * 0.03775 * 10 9 7 21 21 H 1.08000 * 119.94260 * 179.78278 * 11 10 9 22 22 H 0.96698 * 117.00126 * 179.97438 * 15 13 12 23 23 H 1.07996 * 120.06497 * 179.97438 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2754 2.7464 0.0006 6 1 3.0941 1.6963 1.2125 7 6 2.0075 -1.2145 -0.0005 8 1 3.0490 -1.2369 0.2844 9 6 1.3523 -2.4073 -0.3735 10 6 0.2232 -2.3596 -1.2157 11 6 -0.4101 -3.5129 -1.5696 12 6 0.0654 -4.7468 -1.1061 13 6 -0.6203 -5.9924 -1.4960 14 8 -0.2092 -7.0634 -1.0954 15 8 -1.7028 -5.9433 -2.2976 16 6 1.1909 -4.7999 -0.2725 17 17 1.7757 -6.3317 0.2981 18 6 1.8276 -3.6488 0.0912 19 1 -0.4850 0.8400 0.0004 20 1 -0.1417 -1.4097 -1.5774 21 1 -1.2774 -3.4764 -2.2121 22 1 -2.1183 -6.7859 -2.5262 23 1 2.6945 -3.6899 0.7339 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238664132.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:03 Heat of formation + Delta-G solvation = -88.033357 kcal Electronic energy + Delta-G solvation = -12868.284490 eV Core-core repulsion = 10285.700568 eV Total energy + Delta-G solvation = -2582.583922 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26825 -37.54826 -35.54961 -35.04401 -33.97713 -30.51296 -29.39689 -26.38689 -22.78053 -21.25488 -20.27085 -17.78106 -17.12204 -16.32896 -15.56484 -14.68969 -14.43059 -13.95533 -13.38491 -12.96725 -12.45177 -12.25588 -11.88447 -11.52837 -11.36965 -11.02917 -10.72096 -10.53570 -10.34601 -10.24625 -9.88414 -9.47827 -8.97517 -7.92626 -7.64086 -7.23576 -4.84184 1.90287 2.71145 2.82576 2.86237 2.88934 3.20076 3.56967 3.62379 4.02365 4.31957 5.29395 5.96625 6.24027 6.58218 6.62082 6.66381 6.80347 7.04191 7.23372 7.38099 7.54222 7.62740 7.76242 8.15918 8.37606 8.46225 8.85796 9.67486 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.043380 B = 0.008082 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.303337 B = 3463.760223 C = 4033.095289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.426 4.426 8 H 0.091 0.909 9 C 0.137 3.863 10 C -0.183 4.183 11 C -0.034 4.034 12 C -0.274 4.274 13 C 0.523 3.477 14 O -0.537 6.537 15 O -0.526 6.526 16 C 0.071 3.929 17 Cl -0.088 7.088 18 C -0.232 4.232 19 H 0.292 0.708 20 H 0.127 0.873 21 H 0.110 0.890 22 H 0.395 0.605 23 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -0.204 -1.881 1.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.151 4.151 3 Si 0.743 3.257 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.452 4.452 8 H 0.109 0.891 9 C 0.133 3.867 10 C -0.202 4.202 11 C -0.053 4.053 12 C -0.277 4.277 13 C 0.373 3.627 14 O -0.430 6.430 15 O -0.337 6.337 16 C 0.044 3.956 17 Cl -0.059 7.059 18 C -0.252 4.252 19 H 0.104 0.896 20 H 0.144 0.856 21 H 0.128 0.872 22 H 0.251 0.749 23 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.122 -0.075 -1.595 1.601 hybrid contribution -0.010 0.051 -0.025 0.058 sum -0.131 -0.024 -1.620 1.625 Atomic orbital electron populations 1.69715 1.08059 1.30828 1.29424 1.26190 0.94914 1.02260 0.91783 0.86147 0.80184 0.78822 0.80589 1.18215 1.19819 1.18420 1.19924 0.98523 0.90897 1.35844 0.89115 1.17702 0.90412 0.91456 0.87165 1.21084 0.99781 0.97379 1.01989 1.20593 0.97231 0.91132 0.96349 1.17919 1.03416 0.90624 1.15776 1.21054 0.77147 0.89812 0.74716 1.90852 1.65502 1.31928 1.54701 1.84638 1.43951 1.40333 1.64811 1.20351 0.94072 0.85678 0.95459 1.98308 1.87882 1.31764 1.87922 1.20616 1.05181 0.90747 1.08686 0.89638 0.85570 0.87155 0.74912 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.19 10.95 55.56 0.61 -16.58 14 2 C 0.07 1.58 5.14 -17.31 -0.09 1.49 14 3 Si 0.92 16.21 29.60 -169.99 -5.03 11.18 14 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 14 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 14 6 H -0.26 -4.55 7.11 56.52 0.40 -4.15 14 7 C -0.43 -9.97 9.04 -37.74 -0.34 -10.31 14 8 H 0.09 2.00 7.91 -52.49 -0.42 1.59 14 9 C 0.14 3.33 5.57 -106.80 -0.60 2.74 14 10 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 14 11 C -0.03 -0.77 9.54 -39.59 -0.38 -1.15 14 12 C -0.27 -6.38 5.89 -104.72 -0.62 -7.00 14 13 C 0.52 11.31 8.26 34.48 0.28 11.60 14 14 O -0.54 -12.40 14.71 -19.28 -0.28 -12.68 14 15 O -0.53 -9.25 12.66 -40.72 -0.52 -9.77 14 16 C 0.07 1.68 6.31 -39.49 -0.25 1.43 14 17 Cl -0.09 -1.91 25.97 -51.86 -1.35 -3.26 14 18 C -0.23 -5.47 9.50 -39.24 -0.37 -5.84 14 19 H 0.29 5.93 8.29 -40.82 -0.34 5.59 14 20 H 0.13 3.00 6.16 -52.49 -0.32 2.68 14 21 H 0.11 2.26 7.59 -52.49 -0.40 1.86 14 22 H 0.40 4.82 9.11 45.56 0.42 5.24 14 23 H 0.11 2.48 8.06 -52.49 -0.42 2.06 14 LS Contribution 230.20 15.07 3.47 3.47 Total: -1.00 -26.89 230.20 -6.07 -32.96 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -0.28 Total: 6.43 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.70 Total: -11.75 kcal Atomic # 7 Polarization: -17.19 SS G_CDS: 0.61 Total: -16.58 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.80 Total: -22.45 kcal Atomic # 14 Polarization: 16.21 SS G_CDS: -5.03 Total: 11.18 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -1.35 Total: -3.26 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -26.89 -6.07 -32.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238664132.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.074 kcal (2) G-P(sol) polarization free energy of solvation -26.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds