Wall clock time and date at job start Mon Mar 30 2020 03:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47512 * 2 1 4 4 C 1.36940 * 119.99758 * 264.51655 * 3 2 1 5 5 H 1.08001 * 120.00010 * 146.49500 * 4 3 2 6 6 C 1.38811 * 119.99867 * 326.49029 * 4 3 2 7 7 N 1.31623 * 119.99834 * 337.38536 * 6 4 3 8 8 Si 1.86793 * 120.00209 * 157.38524 * 6 4 3 9 9 H 1.48510 * 109.47301 * 59.99864 * 8 6 4 10 10 H 1.48504 * 109.47640 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47110 * 300.00036 * 8 6 4 12 12 C 1.46500 * 120.00233 * 84.51026 * 3 2 1 13 13 H 1.08998 * 109.47190 * 359.97438 * 12 3 2 14 14 C 1.52999 * 109.47018 * 240.00313 * 12 3 2 15 15 C 1.53000 * 109.47341 * 180.02562 * 14 12 3 16 16 C 1.53001 * 109.47165 * 59.99737 * 15 14 12 17 17 H 1.08998 * 109.47199 * 60.00138 * 16 15 14 18 18 C 1.52995 * 109.47279 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47205 * 300.00346 * 16 15 14 20 20 H 1.09001 * 109.47352 * 300.00154 * 19 16 15 21 21 C 1.53001 * 109.47512 * 179.97438 * 19 16 15 22 22 C 1.53000 * 109.46961 * 120.00447 * 12 3 2 23 23 H 1.09007 * 109.46793 * 60.00138 * 1 2 3 24 24 H 1.08994 * 109.47265 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47609 * 300.00867 * 1 2 3 26 26 H 1.08997 * 109.47609 * 239.99133 * 2 1 3 27 27 H 1.09002 * 109.46655 * 119.99375 * 2 1 3 28 28 H 0.97000 * 119.99568 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47553 * 60.00100 * 14 12 3 30 30 H 1.08997 * 109.47563 * 300.00141 * 14 12 3 31 31 H 1.08993 * 109.47404 * 180.02562 * 15 14 12 32 32 H 1.09010 * 109.46850 * 300.00193 * 15 14 12 33 33 H 1.09010 * 109.47040 * 60.00269 * 18 16 15 34 34 H 1.09002 * 109.47245 * 180.02562 * 18 16 15 35 35 H 1.09002 * 109.47241 * 300.00365 * 18 16 15 36 36 H 1.08997 * 109.46849 * 300.00612 * 21 19 16 37 37 H 1.09000 * 109.46512 * 60.00217 * 21 19 16 38 38 H 1.08991 * 109.47204 * 180.02562 * 21 19 16 39 39 H 1.08991 * 109.46837 * 299.99926 * 22 12 3 40 40 H 1.08997 * 109.46977 * 60.00252 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3535 1.9889 -1.1805 5 1 2.1912 3.0490 -1.3073 6 6 2.9019 1.2422 -2.2143 7 7 3.5066 0.1024 -1.9539 8 14 2.7819 1.8549 -3.9748 9 1 3.4565 3.1732 -4.0873 10 1 3.4413 0.8829 -4.8834 11 1 1.3529 1.9964 -4.3533 12 6 2.1482 2.1123 1.2629 13 1 1.8369 1.4711 2.0875 14 6 1.2617 3.3587 1.2240 15 6 1.3977 4.1226 2.5427 16 6 2.8561 4.5400 2.7422 17 1 3.1667 5.1811 1.9172 18 6 2.9923 5.3034 4.0611 19 6 3.7426 3.2936 2.7811 20 1 3.4321 2.6524 3.6060 21 6 5.2011 3.7109 2.9800 22 6 3.6065 2.5296 1.4629 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.8901 -0.4191 -2.6763 29 1 0.2228 3.0614 1.0815 30 1 1.5725 4.0000 0.3993 31 1 0.7659 5.0103 2.5152 32 1 1.0872 3.4814 3.3677 33 1 2.6818 4.6618 4.8859 34 1 4.0312 5.6011 4.2030 35 1 2.3606 6.1913 4.0339 36 1 5.5113 4.3519 2.1548 37 1 5.2982 4.2553 3.9193 38 1 5.8326 2.8230 3.0072 39 1 4.2380 1.6417 1.4906 40 1 3.9173 3.1710 0.6382 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249849510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:08 Heat of formation + Delta-G solvation = -15.150763 kcal Electronic energy + Delta-G solvation = -16854.556717 eV Core-core repulsion = 14475.475097 eV Total energy + Delta-G solvation = -2379.081620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.72600 -35.56969 -32.12600 -31.48782 -30.90086 -28.42298 -26.39169 -24.91519 -23.72297 -21.37794 -20.74206 -19.50086 -19.14383 -16.23008 -14.98269 -14.30208 -14.17210 -14.09101 -13.63250 -13.59462 -13.25538 -12.59266 -12.31935 -11.90005 -11.70995 -11.63480 -11.36963 -11.24115 -11.16197 -10.91899 -10.77700 -10.57851 -10.35073 -10.31873 -10.05599 -10.02866 -9.79058 -9.41617 -9.32466 -9.14251 -8.34369 -6.48413 -5.69119 -3.20194 3.41433 3.47460 3.49884 4.55248 5.08050 5.17422 5.21218 5.40568 5.53148 5.64854 5.77024 5.84297 5.87557 6.02810 6.06259 6.13709 6.18975 6.26735 6.35873 6.38226 6.39992 6.48234 6.48616 6.55663 6.64665 6.70467 6.77201 6.84035 6.94941 7.01421 7.05456 7.30613 7.38225 7.42722 7.84245 7.91532 8.60939 9.30408 9.95715 10.51879 11.31954 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.008755 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.451220 B = 3197.542247 C = 3502.372146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 N -0.583 5.583 4 C -0.244 4.244 5 H 0.060 0.940 6 C 0.005 3.995 7 N -0.891 5.891 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.285 1.285 12 C 0.177 3.823 13 H 0.043 0.957 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.085 4.085 17 H 0.066 0.934 18 C -0.147 4.147 19 C -0.086 4.086 20 H 0.059 0.941 21 C -0.145 4.145 22 C -0.112 4.112 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.098 0.902 27 H 0.017 0.983 28 H 0.252 0.748 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 5.848 9.270 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 N -0.302 5.302 4 C -0.374 4.374 5 H 0.078 0.922 6 C -0.194 4.194 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.218 1.218 11 H -0.211 1.211 12 C 0.070 3.930 13 H 0.061 0.939 14 C -0.164 4.164 15 C -0.147 4.147 16 C -0.103 4.103 17 H 0.085 0.915 18 C -0.204 4.204 19 C -0.105 4.105 20 H 0.078 0.922 21 C -0.202 4.202 22 C -0.152 4.152 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.116 0.884 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.375 5.704 9.145 10.866 hybrid contribution -0.064 0.273 -0.998 1.036 sum -1.440 5.977 8.147 10.207 Atomic orbital electron populations 1.22357 1.01193 0.98489 1.00255 1.20942 0.89544 0.86638 1.01604 1.43947 1.73815 1.11200 1.01258 1.18930 1.34399 0.93833 0.90229 0.92204 1.25035 0.97439 0.98044 0.98897 1.69996 1.36709 1.15823 1.30926 0.86526 0.77791 0.77982 0.85454 1.20927 1.21771 1.21150 1.20329 0.92255 0.91627 0.88778 0.93853 1.21955 0.99994 0.98555 0.95936 1.21569 0.95451 0.99182 0.98536 1.21138 0.95618 0.96518 0.97071 0.91519 1.21900 1.01106 0.99658 0.97757 1.21187 0.94171 0.96062 0.99081 0.92242 1.21867 0.96754 1.00907 1.00718 1.21934 0.98991 0.99321 0.94905 0.93404 0.94928 0.94974 0.88401 0.96499 0.93749 0.93050 0.92040 0.93157 0.92854 0.93142 0.92806 0.93403 0.92980 0.93321 0.93116 0.92688 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.23 37.16 0.38 -3.02 16 2 C 0.14 3.34 5.90 -4.04 -0.02 3.32 16 3 N -0.58 -14.37 2.40 -165.66 -0.40 -14.76 16 4 C -0.24 -6.57 8.25 -15.06 -0.12 -6.69 16 5 H 0.06 1.62 6.83 -52.49 -0.36 1.26 16 6 C 0.00 0.14 4.91 -17.43 -0.09 0.05 16 7 N -0.89 -25.69 11.34 55.49 0.63 -25.07 16 8 Si 0.89 21.79 29.61 -169.99 -5.03 16.76 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.18 3.71 2.63 -67.93 -0.18 3.53 16 13 H 0.04 0.89 7.87 -51.93 -0.41 0.48 16 14 C -0.13 -2.34 5.17 -26.73 -0.14 -2.48 16 15 C -0.11 -1.66 5.20 -26.73 -0.14 -1.80 16 16 C -0.08 -1.24 2.25 -90.62 -0.20 -1.44 16 17 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.15 -1.76 8.84 37.15 0.33 -1.43 16 19 C -0.09 -1.36 2.25 -90.64 -0.20 -1.56 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.15 -2.06 8.84 37.16 0.33 -1.73 16 22 C -0.11 -2.25 4.45 -26.75 -0.12 -2.37 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 2.66 5.33 -51.93 -0.28 2.38 16 27 H 0.02 0.39 8.04 -51.93 -0.42 -0.03 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.25 6.97 -51.93 -0.36 0.89 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.05 0.61 6.43 -51.93 -0.33 0.27 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.43 7.66 -51.93 -0.40 1.03 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -27.69 303.30 -7.93 -35.62 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.52 Total: -1.50 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -0.18 Total: -15.62 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.23 Total: -39.83 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.69 -7.93 -35.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249849510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.468 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds