Wall clock time and date at job start Mon Mar 30 2020 03:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47512 * 2 1 4 4 C 1.36940 * 119.99758 * 264.51655 * 3 2 1 5 5 H 1.08001 * 120.00010 * 146.49500 * 4 3 2 6 6 C 1.38811 * 119.99867 * 326.49029 * 4 3 2 7 7 N 1.31623 * 119.99834 * 337.38536 * 6 4 3 8 8 Si 1.86793 * 120.00209 * 157.38524 * 6 4 3 9 9 H 1.48510 * 109.47301 * 59.99864 * 8 6 4 10 10 H 1.48504 * 109.47640 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47110 * 300.00036 * 8 6 4 12 12 C 1.46500 * 120.00233 * 84.51026 * 3 2 1 13 13 H 1.08998 * 109.47190 * 359.97438 * 12 3 2 14 14 C 1.52999 * 109.47018 * 240.00313 * 12 3 2 15 15 C 1.53000 * 109.47341 * 180.02562 * 14 12 3 16 16 C 1.53001 * 109.47165 * 59.99737 * 15 14 12 17 17 H 1.08998 * 109.47199 * 60.00138 * 16 15 14 18 18 C 1.52995 * 109.47279 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47205 * 300.00346 * 16 15 14 20 20 H 1.09001 * 109.47352 * 300.00154 * 19 16 15 21 21 C 1.53001 * 109.47512 * 179.97438 * 19 16 15 22 22 C 1.53000 * 109.46961 * 120.00447 * 12 3 2 23 23 H 1.09007 * 109.46793 * 60.00138 * 1 2 3 24 24 H 1.08994 * 109.47265 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47609 * 300.00867 * 1 2 3 26 26 H 1.08997 * 109.47609 * 239.99133 * 2 1 3 27 27 H 1.09002 * 109.46655 * 119.99375 * 2 1 3 28 28 H 0.97000 * 119.99568 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47553 * 60.00100 * 14 12 3 30 30 H 1.08997 * 109.47563 * 300.00141 * 14 12 3 31 31 H 1.08993 * 109.47404 * 180.02562 * 15 14 12 32 32 H 1.09010 * 109.46850 * 300.00193 * 15 14 12 33 33 H 1.09010 * 109.47040 * 60.00269 * 18 16 15 34 34 H 1.09002 * 109.47245 * 180.02562 * 18 16 15 35 35 H 1.09002 * 109.47241 * 300.00365 * 18 16 15 36 36 H 1.08997 * 109.46849 * 300.00612 * 21 19 16 37 37 H 1.09000 * 109.46512 * 60.00217 * 21 19 16 38 38 H 1.08991 * 109.47204 * 180.02562 * 21 19 16 39 39 H 1.08991 * 109.46837 * 299.99926 * 22 12 3 40 40 H 1.08997 * 109.46977 * 60.00252 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3535 1.9889 -1.1805 5 1 2.1912 3.0490 -1.3073 6 6 2.9019 1.2422 -2.2143 7 7 3.5066 0.1024 -1.9539 8 14 2.7819 1.8549 -3.9748 9 1 3.4565 3.1732 -4.0873 10 1 3.4413 0.8829 -4.8834 11 1 1.3529 1.9964 -4.3533 12 6 2.1482 2.1123 1.2629 13 1 1.8369 1.4711 2.0875 14 6 1.2617 3.3587 1.2240 15 6 1.3977 4.1226 2.5427 16 6 2.8561 4.5400 2.7422 17 1 3.1667 5.1811 1.9172 18 6 2.9923 5.3034 4.0611 19 6 3.7426 3.2936 2.7811 20 1 3.4321 2.6524 3.6060 21 6 5.2011 3.7109 2.9800 22 6 3.6065 2.5296 1.4629 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.8901 -0.4191 -2.6763 29 1 0.2228 3.0614 1.0815 30 1 1.5725 4.0000 0.3993 31 1 0.7659 5.0103 2.5152 32 1 1.0872 3.4814 3.3677 33 1 2.6818 4.6618 4.8859 34 1 4.0312 5.6011 4.2030 35 1 2.3606 6.1913 4.0339 36 1 5.5113 4.3519 2.1548 37 1 5.2982 4.2553 3.9193 38 1 5.8326 2.8230 3.0072 39 1 4.2380 1.6417 1.4906 40 1 3.9173 3.1710 0.6382 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249849510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:08 Heat of formation + Delta-G solvation = -28.455386 kcal Electronic energy + Delta-G solvation = -16855.133648 eV Core-core repulsion = 14475.475097 eV Total energy + Delta-G solvation = -2379.658552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17818 -37.32132 -33.85329 -32.96038 -32.59071 -30.11830 -27.83953 -26.49522 -25.42055 -22.85003 -22.35336 -21.26065 -20.47302 -18.18365 -16.91528 -15.97139 -15.84645 -15.46122 -15.03211 -14.96349 -14.83469 -14.30581 -13.77380 -13.49783 -13.24511 -13.08998 -12.84241 -12.68984 -12.60039 -12.54540 -12.46401 -12.28320 -12.07339 -11.94382 -11.68278 -11.53136 -11.36729 -11.15750 -10.80052 -10.71099 -10.38545 -8.50942 -7.77274 -5.31691 1.44583 1.47196 1.53355 2.53469 3.28477 3.59286 3.86810 3.97920 4.19203 4.34185 4.38557 4.55706 4.61140 4.68756 4.72141 4.77252 4.82684 4.87385 4.92656 4.97614 5.05120 5.06984 5.14274 5.14569 5.20711 5.25507 5.28918 5.39576 5.50254 5.51574 5.56800 5.65024 5.71771 5.75197 5.80663 5.90927 6.52072 7.23430 7.97195 8.46949 9.20172 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.008755 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.451220 B = 3197.542247 C = 3502.372146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.242 4.242 5 H 0.054 0.946 6 C -0.045 4.045 7 N -0.921 5.921 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.171 3.829 13 H 0.050 0.950 14 C -0.115 4.115 15 C -0.102 4.102 16 C -0.083 4.083 17 H 0.053 0.947 18 C -0.140 4.140 19 C -0.080 4.080 20 H 0.069 0.931 21 C -0.142 4.142 22 C -0.101 4.101 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.018 0.982 28 H 0.248 0.752 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.024 0.976 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 7.242 10.988 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 N -0.318 5.318 4 C -0.372 4.372 5 H 0.072 0.928 6 C -0.241 4.241 7 N -0.567 5.567 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.065 3.935 13 H 0.068 0.932 14 C -0.155 4.155 15 C -0.140 4.140 16 C -0.102 4.102 17 H 0.072 0.928 18 C -0.197 4.197 19 C -0.099 4.099 20 H 0.088 0.912 21 C -0.199 4.199 22 C -0.141 4.141 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.208 7.118 10.882 13.189 hybrid contribution 0.190 -0.183 -1.493 1.516 sum -2.018 6.936 9.389 11.846 Atomic orbital electron populations 1.22145 0.98364 1.00060 1.00138 1.20892 0.91769 0.86311 1.00122 1.44195 1.74103 1.11502 1.02029 1.19067 1.33199 0.93630 0.91330 0.92828 1.25670 0.97858 0.98547 1.02069 1.70129 1.38126 1.17015 1.31423 0.85615 0.77639 0.77442 0.81465 1.20409 1.22044 1.20829 1.20546 0.93249 0.92392 0.87342 0.93195 1.21806 0.98815 0.97304 0.97533 1.21534 0.96368 0.99651 0.96468 1.21109 0.94672 0.95806 0.98570 0.92798 1.21832 1.02154 0.99849 0.95893 1.21135 0.95905 0.96417 0.96407 0.91231 1.21839 0.95298 1.00874 1.01912 1.21778 0.97713 0.97957 0.96625 0.94904 0.92525 0.93523 0.91527 0.96392 0.94279 0.93497 0.94279 0.91194 0.91502 0.92129 0.91887 0.92106 0.93709 0.90455 0.93680 0.95741 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.00 10.23 71.98 0.74 -5.26 16 2 C 0.14 6.59 5.90 86.38 0.51 7.10 16 3 N -0.60 -30.03 2.40 -678.04 -1.62 -31.65 16 4 C -0.24 -13.31 8.25 84.03 0.69 -12.61 16 5 H 0.05 2.98 6.83 -2.91 -0.02 2.96 16 6 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16 7 N -0.92 -54.83 11.34 21.65 0.25 -54.58 16 8 Si 0.95 45.68 29.61 68.60 2.03 47.71 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 C 0.17 7.16 2.63 44.99 0.12 7.28 16 13 H 0.05 2.01 7.87 -2.39 -0.02 1.99 16 14 C -0.12 -4.22 5.17 30.59 0.16 -4.06 16 15 C -0.10 -2.83 5.20 30.59 0.16 -2.67 16 16 C -0.08 -2.21 2.25 -10.80 -0.02 -2.24 16 17 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 18 C -0.14 -2.78 8.84 71.98 0.64 -2.15 16 19 C -0.08 -2.39 2.25 -10.81 -0.02 -2.42 16 20 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 21 C -0.14 -3.78 8.84 71.98 0.64 -3.15 16 22 C -0.10 -4.13 4.45 30.58 0.14 -3.99 16 23 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 3.72 5.33 -2.39 -0.01 3.71 16 27 H 0.02 0.84 8.04 -2.39 -0.02 0.82 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.59 6.97 -2.39 -0.02 1.57 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.06 1.15 6.43 -2.39 -0.02 1.13 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.63 6.43 -2.39 -0.02 1.61 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.03 1.58 7.66 -2.39 -0.02 1.56 16 Total: -1.00 -60.70 303.30 5.77 -54.93 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.96 Total: 9.92 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 4.15 Total: -26.33 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.38 Total: -86.23 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -60.70 5.77 -54.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249849510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.474 kcal (2) G-P(sol) polarization free energy of solvation -60.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds