Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47491 * 2 1 4 4 C 1.36939 * 119.99916 * 95.33999 * 3 2 1 5 5 H 1.07997 * 120.00211 * 221.18497 * 4 3 2 6 6 C 1.38811 * 119.99416 * 41.18959 * 4 3 2 7 7 N 1.31623 * 120.00298 * 22.59723 * 6 4 3 8 8 Si 1.86802 * 119.99793 * 202.59170 * 6 4 3 9 9 H 1.48501 * 109.46903 * 90.00024 * 8 6 4 10 10 H 1.48500 * 109.47284 * 330.00085 * 8 6 4 11 11 H 1.48499 * 109.47168 * 209.99903 * 8 6 4 12 12 C 1.46507 * 120.00105 * 275.35111 * 3 2 1 13 13 H 1.08997 * 109.47121 * 67.37109 * 12 3 2 14 14 C 1.52997 * 109.46642 * 307.36925 * 12 3 2 15 15 C 1.52995 * 109.47220 * 299.99841 * 14 12 3 16 16 C 1.53001 * 109.47504 * 300.00439 * 15 14 12 17 17 H 1.09005 * 109.47337 * 300.00062 * 16 15 14 18 18 C 1.52995 * 109.47504 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.46947 * 59.99511 * 16 15 14 20 20 H 1.09002 * 109.46822 * 60.00880 * 19 16 15 21 21 C 1.53001 * 109.46947 * 180.02562 * 19 16 15 22 22 C 1.52995 * 109.47418 * 300.00542 * 19 16 15 23 23 H 1.09006 * 109.47228 * 299.99846 * 1 2 3 24 24 H 1.09002 * 109.46974 * 59.99835 * 1 2 3 25 25 H 1.08992 * 109.47182 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46992 * 240.00638 * 2 1 3 27 27 H 1.08991 * 109.47486 * 120.00082 * 2 1 3 28 28 H 0.97004 * 119.99693 * 4.80187 * 7 6 4 29 29 H 1.08996 * 109.47471 * 60.00466 * 14 12 3 30 30 H 1.09005 * 109.46557 * 180.02562 * 14 12 3 31 31 H 1.09003 * 109.47591 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.47400 * 60.00255 * 15 14 12 33 33 H 1.09002 * 109.47400 * 299.99816 * 18 16 15 34 34 H 1.08997 * 109.47312 * 59.99628 * 18 16 15 35 35 H 1.09004 * 109.47336 * 180.02562 * 18 16 15 36 36 H 1.09011 * 109.46913 * 180.02562 * 21 19 16 37 37 H 1.08998 * 109.47700 * 300.00391 * 21 19 16 38 38 H 1.09000 * 109.47118 * 60.00995 * 21 19 16 39 39 H 1.09005 * 109.46874 * 299.99454 * 22 19 16 40 40 H 1.09005 * 109.47086 * 180.02562 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3507 1.9899 1.1808 5 1 2.0760 3.0200 1.3534 6 6 3.0408 1.2828 2.1559 7 7 3.7551 0.2286 1.8229 8 14 2.9558 1.8276 3.9406 9 1 1.8153 1.1524 4.6104 10 1 2.7643 3.2990 4.0005 11 1 4.2200 1.4644 4.6298 12 6 2.1511 2.1113 -1.2632 13 1 1.1621 2.2905 -1.6849 14 6 2.9821 1.2836 -2.2457 15 6 4.3703 1.0321 -1.6537 16 6 5.0661 2.3706 -1.3985 17 1 5.1649 2.9138 -2.3384 18 6 6.4546 2.1190 -0.8072 19 6 4.2350 3.1982 -0.4161 20 1 4.1364 2.6551 0.5238 21 6 4.9306 4.5370 -0.1613 22 6 2.8468 3.4498 -1.0080 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8562 -0.0134 0.8890 29 1 2.4864 0.3301 -2.4275 30 1 3.0812 1.8270 -3.1854 31 1 4.9626 0.4428 -2.3538 32 1 4.2716 0.4889 -0.7139 33 1 6.3563 1.5757 0.1326 34 1 7.0464 1.5296 -1.5074 35 1 6.9502 3.0727 -0.6249 36 1 4.3387 5.1265 0.5390 37 1 5.9197 4.3582 0.2602 38 1 5.0289 5.0800 -1.1013 39 1 2.9456 3.9930 -1.9478 40 1 2.2549 4.0398 -0.3082 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249849514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = -7.243848 kcal Electronic energy + Delta-G solvation = -17702.124938 eV Core-core repulsion = 15323.386187 eV Total energy + Delta-G solvation = -2378.738750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.94546 -35.17695 -32.26876 -31.35422 -30.82213 -28.16440 -26.15419 -25.02208 -23.40342 -21.29247 -21.05659 -19.38016 -18.28497 -16.83055 -14.87389 -14.40346 -14.11935 -13.70415 -13.59547 -13.42355 -12.94617 -12.70517 -12.44591 -11.81475 -11.49243 -11.31925 -11.08488 -11.02103 -10.90631 -10.81999 -10.73678 -10.50376 -10.28037 -10.08167 -10.07858 -9.83102 -9.50219 -9.28771 -9.08743 -8.80437 -8.09237 -6.64023 -5.88293 -3.29571 3.52388 3.52606 3.68886 4.60383 5.29207 5.41692 5.52845 5.57166 5.69790 5.90897 6.01867 6.11199 6.17457 6.19057 6.24267 6.29913 6.40744 6.42605 6.47625 6.52837 6.55223 6.60700 6.63310 6.66203 6.73082 6.80184 6.83888 6.89461 7.13328 7.16261 7.23077 7.28740 7.35253 7.42236 7.87198 8.23065 8.72256 9.27021 9.89205 10.42112 11.25484 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.015247 C = 0.011316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.784549 B = 1835.936665 C = 2473.770423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 N -0.588 5.588 4 C -0.330 4.330 5 H 0.049 0.951 6 C -0.018 4.018 7 N -0.909 5.909 8 Si 1.058 2.942 9 H -0.294 1.294 10 H -0.292 1.292 11 H -0.290 1.290 12 C 0.172 3.828 13 H 0.017 0.983 14 C -0.131 4.131 15 C -0.109 4.109 16 C -0.073 4.073 17 H 0.043 0.957 18 C -0.145 4.145 19 C -0.104 4.104 20 H 0.136 0.864 21 C -0.143 4.143 22 C -0.089 4.089 23 H 0.050 0.950 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.273 0.727 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 3.206 -5.317 6.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.008 3.992 3 N -0.311 5.311 4 C -0.460 4.460 5 H 0.066 0.934 6 C -0.222 4.222 7 N -0.549 5.549 8 Si 0.889 3.111 9 H -0.221 1.221 10 H -0.218 1.218 11 H -0.217 1.217 12 C 0.065 3.935 13 H 0.035 0.965 14 C -0.171 4.171 15 C -0.147 4.147 16 C -0.092 4.092 17 H 0.062 0.938 18 C -0.202 4.202 19 C -0.121 4.121 20 H 0.153 0.847 21 C -0.200 4.200 22 C -0.127 4.127 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.122 2.847 -3.770 4.856 hybrid contribution -0.577 0.450 -1.727 1.876 sum 0.545 3.297 -5.497 6.433 Atomic orbital electron populations 1.22246 1.00526 0.98698 1.00626 1.20859 0.90851 0.87384 1.00085 1.43934 1.74559 1.11209 1.01421 1.19636 1.33435 0.99062 0.93826 0.93387 1.25836 0.93650 0.98246 1.04446 1.70798 1.34448 1.28590 1.21114 0.83599 0.76177 0.75099 0.76223 1.22146 1.21836 1.21655 1.20444 0.93843 0.91709 0.87454 0.96507 1.21973 0.97159 0.99940 0.97998 1.21553 0.94512 0.96929 1.01682 1.20976 0.94443 0.96305 0.97429 0.93839 1.21852 0.96619 1.00538 1.01192 1.21621 0.92426 0.95076 1.03006 0.84697 1.21870 1.00096 0.98268 0.99752 1.21414 0.96876 0.96256 0.98155 0.93094 0.94686 0.94817 0.95537 0.90884 0.91334 0.93251 0.93906 0.94678 0.89479 0.92018 0.94219 0.93412 0.93551 0.93394 0.94640 0.94624 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.23 37.16 0.38 -2.87 16 2 C 0.13 3.05 5.17 -4.04 -0.02 3.03 16 3 N -0.59 -13.77 1.54 -165.67 -0.26 -14.02 16 4 C -0.33 -8.41 5.75 -15.06 -0.09 -8.49 16 5 H 0.05 1.28 6.70 -52.49 -0.35 0.93 16 6 C -0.02 -0.48 4.13 -17.43 -0.07 -0.55 16 7 N -0.91 -25.20 12.39 55.49 0.69 -24.51 16 8 Si 1.06 24.52 29.98 -169.99 -5.10 19.43 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.17 3.60 3.36 -67.93 -0.23 3.38 16 13 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 14 C -0.13 -2.53 5.10 -26.74 -0.14 -2.66 16 15 C -0.11 -2.16 5.05 -26.73 -0.13 -2.30 16 16 C -0.07 -1.38 2.25 -90.62 -0.20 -1.58 16 17 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.14 -2.58 8.84 37.15 0.33 -2.26 16 19 C -0.10 -2.10 1.91 -90.62 -0.17 -2.27 16 20 H 0.14 3.27 4.48 -51.93 -0.23 3.03 16 21 C -0.14 -2.53 8.84 37.16 0.33 -2.20 16 22 C -0.09 -1.79 4.22 -26.74 -0.11 -1.91 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.58 6.14 -51.92 -0.32 0.26 16 27 H 0.07 1.87 5.83 -51.93 -0.30 1.57 16 28 H 0.27 7.50 4.65 -40.82 -0.19 7.31 16 29 H 0.05 0.94 6.54 -51.93 -0.34 0.60 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 2.02 5.00 -51.93 -0.26 1.76 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.78 6.43 -51.93 -0.33 0.44 16 36 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.05 0.81 6.43 -51.93 -0.33 0.48 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 LS Contribution 286.96 15.07 4.32 4.32 Total: -1.00 -26.07 286.96 -7.36 -33.43 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.89 Total: 2.03 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -0.13 Total: -20.68 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.43 Total: -38.53 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.10 Total: 19.43 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.07 -7.36 -33.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249849514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.189 kcal (2) G-P(sol) polarization free energy of solvation -26.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds