Wall clock time and date at job start Mon Mar 30 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47491 * 2 1 4 4 C 1.36939 * 119.99916 * 95.33999 * 3 2 1 5 5 H 1.07997 * 120.00211 * 221.18497 * 4 3 2 6 6 C 1.38811 * 119.99416 * 41.18959 * 4 3 2 7 7 N 1.31623 * 120.00298 * 22.59723 * 6 4 3 8 8 Si 1.86802 * 119.99793 * 202.59170 * 6 4 3 9 9 H 1.48501 * 109.46903 * 90.00024 * 8 6 4 10 10 H 1.48500 * 109.47284 * 330.00085 * 8 6 4 11 11 H 1.48499 * 109.47168 * 209.99903 * 8 6 4 12 12 C 1.46507 * 120.00105 * 275.35111 * 3 2 1 13 13 H 1.08997 * 109.47121 * 67.37109 * 12 3 2 14 14 C 1.52997 * 109.46642 * 307.36925 * 12 3 2 15 15 C 1.52995 * 109.47220 * 299.99841 * 14 12 3 16 16 C 1.53001 * 109.47504 * 300.00439 * 15 14 12 17 17 H 1.09005 * 109.47337 * 300.00062 * 16 15 14 18 18 C 1.52995 * 109.47504 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.46947 * 59.99511 * 16 15 14 20 20 H 1.09002 * 109.46822 * 60.00880 * 19 16 15 21 21 C 1.53001 * 109.46947 * 180.02562 * 19 16 15 22 22 C 1.52995 * 109.47418 * 300.00542 * 19 16 15 23 23 H 1.09006 * 109.47228 * 299.99846 * 1 2 3 24 24 H 1.09002 * 109.46974 * 59.99835 * 1 2 3 25 25 H 1.08992 * 109.47182 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46992 * 240.00638 * 2 1 3 27 27 H 1.08991 * 109.47486 * 120.00082 * 2 1 3 28 28 H 0.97004 * 119.99693 * 4.80187 * 7 6 4 29 29 H 1.08996 * 109.47471 * 60.00466 * 14 12 3 30 30 H 1.09005 * 109.46557 * 180.02562 * 14 12 3 31 31 H 1.09003 * 109.47591 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.47400 * 60.00255 * 15 14 12 33 33 H 1.09002 * 109.47400 * 299.99816 * 18 16 15 34 34 H 1.08997 * 109.47312 * 59.99628 * 18 16 15 35 35 H 1.09004 * 109.47336 * 180.02562 * 18 16 15 36 36 H 1.09011 * 109.46913 * 180.02562 * 21 19 16 37 37 H 1.08998 * 109.47700 * 300.00391 * 21 19 16 38 38 H 1.09000 * 109.47118 * 60.00995 * 21 19 16 39 39 H 1.09005 * 109.46874 * 299.99454 * 22 19 16 40 40 H 1.09005 * 109.47086 * 180.02562 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3507 1.9899 1.1808 5 1 2.0760 3.0200 1.3534 6 6 3.0408 1.2828 2.1559 7 7 3.7551 0.2286 1.8229 8 14 2.9558 1.8276 3.9406 9 1 1.8153 1.1524 4.6104 10 1 2.7643 3.2990 4.0005 11 1 4.2200 1.4644 4.6298 12 6 2.1511 2.1113 -1.2632 13 1 1.1621 2.2905 -1.6849 14 6 2.9821 1.2836 -2.2457 15 6 4.3703 1.0321 -1.6537 16 6 5.0661 2.3706 -1.3985 17 1 5.1649 2.9138 -2.3384 18 6 6.4546 2.1190 -0.8072 19 6 4.2350 3.1982 -0.4161 20 1 4.1364 2.6551 0.5238 21 6 4.9306 4.5370 -0.1613 22 6 2.8468 3.4498 -1.0080 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8562 -0.0134 0.8890 29 1 2.4864 0.3301 -2.4275 30 1 3.0812 1.8270 -3.1854 31 1 4.9626 0.4428 -2.3538 32 1 4.2716 0.4889 -0.7139 33 1 6.3563 1.5757 0.1326 34 1 7.0464 1.5296 -1.5074 35 1 6.9502 3.0727 -0.6249 36 1 4.3387 5.1265 0.5390 37 1 5.9197 4.3582 0.2602 38 1 5.0289 5.0800 -1.1013 39 1 2.9456 3.9930 -1.9478 40 1 2.2549 4.0398 -0.3082 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249849514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:10 Heat of formation + Delta-G solvation = -18.684670 kcal Electronic energy + Delta-G solvation = -17702.621049 eV Core-core repulsion = 15323.386187 eV Total energy + Delta-G solvation = -2379.234862 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58282 -36.90514 -34.04365 -32.93337 -32.55435 -29.88974 -27.71562 -26.67786 -25.19949 -23.02457 -22.62346 -21.03302 -19.95231 -18.72466 -16.59188 -16.08596 -15.86688 -15.51475 -15.17429 -14.95675 -14.61459 -14.30741 -14.14919 -13.47170 -13.02738 -12.87046 -12.66847 -12.60546 -12.54884 -12.53639 -12.42378 -12.12273 -11.92470 -11.91160 -11.77075 -11.51826 -11.19042 -11.04768 -10.64754 -10.46080 -10.02527 -8.58323 -7.86484 -5.29578 1.61495 1.65966 1.82451 2.71693 3.40363 3.61243 3.99450 4.04906 4.10722 4.40124 4.42858 4.49930 4.61499 4.68416 4.74991 4.78414 4.83853 4.84342 4.89421 4.96746 5.00889 5.05161 5.08671 5.11340 5.17987 5.24118 5.28651 5.36647 5.39261 5.53052 5.61245 5.67205 5.74865 5.78795 6.16411 6.21943 6.72842 7.36738 7.96716 8.47641 9.23139 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.015247 C = 0.011316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.784549 B = 1835.936665 C = 2473.770423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.313 4.313 5 H 0.034 0.966 6 C -0.057 4.057 7 N -0.936 5.936 8 Si 1.093 2.907 9 H -0.292 1.292 10 H -0.279 1.279 11 H -0.298 1.298 12 C 0.164 3.836 13 H 0.019 0.981 14 C -0.124 4.124 15 C -0.108 4.108 16 C -0.070 4.070 17 H 0.066 0.934 18 C -0.138 4.138 19 C -0.105 4.105 20 H 0.093 0.907 21 C -0.137 4.137 22 C -0.085 4.085 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.267 0.733 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.027 0.973 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 4.212 -6.952 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.010 3.990 3 N -0.321 5.321 4 C -0.444 4.444 5 H 0.051 0.949 6 C -0.257 4.257 7 N -0.579 5.579 8 Si 0.921 3.079 9 H -0.219 1.219 10 H -0.204 1.204 11 H -0.225 1.225 12 C 0.058 3.942 13 H 0.037 0.963 14 C -0.163 4.163 15 C -0.146 4.146 16 C -0.088 4.088 17 H 0.084 0.916 18 C -0.195 4.195 19 C -0.123 4.123 20 H 0.111 0.889 21 C -0.194 4.194 22 C -0.123 4.123 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.156 3.864 -5.419 6.755 hybrid contribution -0.613 0.141 -1.278 1.424 sum 0.544 4.004 -6.697 7.822 Atomic orbital electron populations 1.22092 0.98356 1.00158 1.00283 1.20778 0.92451 0.86943 0.98814 1.44060 1.74758 1.11359 1.01894 1.19530 1.31936 0.98267 0.94644 0.94865 1.26619 0.93714 0.98432 1.06905 1.70842 1.36282 1.29971 1.20809 0.83118 0.75681 0.75563 0.73547 1.21886 1.20417 1.22460 1.20605 0.94468 0.92324 0.86764 0.96347 1.21885 0.96233 0.99791 0.98358 1.21502 0.95437 0.97425 1.00219 1.20960 0.94352 0.95605 0.97918 0.91596 1.21781 0.96683 1.01214 0.99865 1.21472 0.93237 0.96137 1.01453 0.88880 1.21801 0.99821 0.96964 1.00862 1.21381 0.96365 0.95655 0.98888 0.94693 0.93594 0.92501 0.94862 0.94167 0.92034 0.93471 0.91263 0.93137 0.93214 0.95423 0.92455 0.91798 0.94091 0.93017 0.92294 0.92005 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.87 10.23 71.98 0.74 -5.13 16 2 C 0.14 6.21 5.17 86.38 0.45 6.65 16 3 N -0.60 -27.99 1.54 -678.05 -1.05 -29.04 16 4 C -0.31 -16.20 5.75 84.03 0.48 -15.71 16 5 H 0.03 1.82 6.70 -2.91 -0.02 1.80 16 6 C -0.06 -3.09 4.13 84.86 0.35 -2.74 16 7 N -0.94 -53.57 12.39 21.65 0.27 -53.30 16 8 Si 1.09 50.49 29.98 68.60 2.06 52.54 16 9 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 12 C 0.16 6.65 3.36 44.99 0.15 6.80 16 13 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 14 C -0.12 -4.47 5.10 30.59 0.16 -4.31 16 15 C -0.11 -4.13 5.05 30.59 0.15 -3.98 16 16 C -0.07 -2.48 2.25 -10.79 -0.02 -2.51 16 17 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 18 C -0.14 -4.72 8.84 71.98 0.64 -4.08 16 19 C -0.10 -4.11 1.91 -10.79 -0.02 -4.13 16 20 H 0.09 4.55 4.48 -2.39 -0.01 4.54 16 21 C -0.14 -4.58 8.84 71.98 0.64 -3.94 16 22 C -0.09 -3.27 4.22 30.59 0.13 -3.14 16 23 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.03 1.45 6.14 -2.38 -0.01 1.43 16 27 H 0.04 2.11 5.83 -2.39 -0.01 2.10 16 28 H 0.27 15.22 4.65 -92.70 -0.43 14.79 16 29 H 0.05 1.71 6.54 -2.39 -0.02 1.69 16 30 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.32 5.00 -2.39 -0.01 2.31 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.94 6.43 -2.38 -0.02 1.92 16 36 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.05 1.66 6.43 -2.39 -0.02 1.64 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.04 1.61 6.95 -2.38 -0.02 1.59 16 Total: -1.00 -56.40 286.96 6.44 -49.96 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.32 Total: 16.06 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 3.84 Total: -36.23 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -0.78 Total: -82.34 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.06 Total: 52.54 kcal Total: -56.40 6.44 -49.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249849514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.278 kcal (2) G-P(sol) polarization free energy of solvation -56.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds