Wall clock time and date at job start Mon Mar 30 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47237 * 2 1 4 4 C 1.36933 * 120.00133 * 270.01430 * 3 2 1 5 5 H 1.08003 * 120.00014 * 144.81629 * 4 3 2 6 6 C 1.38814 * 120.00141 * 324.82090 * 4 3 2 7 7 N 1.31612 * 120.00107 * 164.42189 * 6 4 3 8 8 Si 1.86809 * 119.99589 * 344.42674 * 6 4 3 9 9 H 1.48491 * 109.47086 * 95.77182 * 8 6 4 10 10 H 1.48501 * 109.46790 * 215.77649 * 8 6 4 11 11 H 1.48495 * 109.46921 * 335.77059 * 8 6 4 12 12 C 1.46503 * 119.99974 * 90.00813 * 3 2 1 13 13 H 1.08995 * 109.47119 * 298.43918 * 12 3 2 14 14 C 1.52999 * 109.47013 * 58.44083 * 12 3 2 15 15 C 1.53000 * 109.47207 * 59.99783 * 14 12 3 16 16 H 1.09005 * 109.47004 * 299.99955 * 15 14 12 17 17 C 1.53006 * 109.47030 * 180.02562 * 15 14 12 18 18 C 1.52988 * 109.47236 * 60.00075 * 15 14 12 19 19 C 1.52996 * 109.47468 * 300.00195 * 18 15 14 20 20 H 1.09007 * 109.47261 * 300.00028 * 19 18 15 21 21 C 1.52997 * 109.47675 * 179.97438 * 19 18 15 22 22 C 1.52999 * 109.47234 * 178.43561 * 12 3 2 23 23 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47428 * 300.00037 * 1 2 3 25 25 H 1.09003 * 109.46757 * 60.00106 * 1 2 3 26 26 H 1.08997 * 109.47428 * 239.99963 * 2 1 3 27 27 H 1.09003 * 109.46757 * 119.99894 * 2 1 3 28 28 H 0.97003 * 119.99495 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47638 * 180.02562 * 14 12 3 30 30 H 1.09007 * 109.46778 * 299.99757 * 14 12 3 31 31 H 1.08995 * 109.47731 * 59.99562 * 17 15 14 32 32 H 1.08995 * 109.47136 * 180.02562 * 17 15 14 33 33 H 1.09005 * 109.46700 * 299.99541 * 17 15 14 34 34 H 1.09004 * 109.47570 * 179.97438 * 18 15 14 35 35 H 1.09005 * 109.47222 * 60.00013 * 18 15 14 36 36 H 1.08995 * 109.47339 * 300.00144 * 21 19 18 37 37 H 1.09007 * 109.46857 * 60.00074 * 21 19 18 38 38 H 1.08999 * 109.47419 * 179.97438 * 21 19 18 39 39 H 1.08995 * 109.46974 * 179.97438 * 22 12 3 40 40 H 1.09009 * 109.46884 * 60.00537 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2463 2.0268 -1.1859 5 1 2.0489 3.0852 -1.2711 6 6 2.7311 1.3210 -2.2784 7 7 2.6638 1.8459 -3.4835 8 14 3.4789 -0.3740 -2.0383 9 1 2.4475 -1.4109 -2.2953 10 1 4.6093 -0.5548 -2.9842 11 1 3.9744 -0.5033 -0.6444 12 6 2.2627 2.0717 1.2688 13 1 1.3302 2.1446 1.8282 14 6 3.2887 1.2859 2.0877 15 6 4.5978 1.1836 1.3023 16 1 4.4159 0.6698 0.3584 17 6 5.6236 0.3972 2.1211 18 6 5.1361 2.5881 1.0230 19 6 4.1102 3.3741 0.2041 20 1 3.9282 2.8603 -0.7399 21 6 4.6482 4.7789 -0.0747 22 6 2.8011 3.4764 0.9895 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0029 1.3527 -4.2469 29 1 3.4703 1.7994 3.0319 30 1 2.9052 0.2852 2.2867 31 1 5.2399 -0.6034 2.3198 32 1 6.5563 0.3247 1.5618 33 1 5.8055 0.9107 3.0652 34 1 6.0689 2.5153 0.4639 35 1 5.3179 3.1020 1.9670 36 1 4.8297 5.2925 0.8694 37 1 5.5809 4.7063 -0.6341 38 1 3.9174 5.3386 -0.6585 39 1 2.9825 3.9903 1.9334 40 1 2.0701 4.0363 0.4060 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249991222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:12 Heat of formation + Delta-G solvation = 8.746228 kcal Electronic energy + Delta-G solvation = -17642.801814 eV Core-core repulsion = 15264.756445 eV Total energy + Delta-G solvation = -2378.045369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.02200 -35.06364 -32.92046 -31.74987 -30.70443 -28.19193 -26.00322 -25.73603 -23.73182 -22.17915 -20.18091 -19.72648 -18.45592 -16.46513 -15.57837 -14.63803 -14.44378 -14.08478 -13.50769 -13.11905 -12.92087 -12.61662 -12.39780 -12.09716 -11.81584 -11.62565 -11.49008 -11.26263 -11.21256 -11.01479 -10.96301 -10.62542 -10.45672 -10.31495 -9.85566 -9.69816 -9.36884 -9.26411 -9.04412 -8.97267 -8.31196 -6.71165 -5.90792 -3.29493 3.33447 3.46150 3.51568 4.54390 4.99839 5.31803 5.40841 5.50922 5.57795 5.85489 5.89413 5.94139 6.05504 6.11795 6.14976 6.21962 6.30097 6.31664 6.34647 6.38841 6.41728 6.47709 6.51209 6.54999 6.63691 6.65848 6.70788 6.78006 6.79710 7.05775 7.15339 7.19097 7.21833 7.30126 7.81562 8.11153 8.43473 9.05785 9.76687 10.18830 11.23618 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.014658 C = 0.013346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.784651 B = 1909.728752 C = 2097.472057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 N -0.603 5.603 4 C -0.243 4.243 5 H 0.087 0.913 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.877 3.123 9 H -0.292 1.292 10 H -0.309 1.309 11 H -0.252 1.252 12 C 0.176 3.824 13 H 0.029 0.971 14 C -0.125 4.125 15 C -0.104 4.104 16 H 0.097 0.903 17 C -0.144 4.144 18 C -0.095 4.095 19 C -0.119 4.119 20 H 0.139 0.861 21 C -0.138 4.138 22 C -0.091 4.091 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.261 0.739 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.445 -0.619 9.722 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.327 5.327 4 C -0.371 4.371 5 H 0.105 0.895 6 C -0.174 4.174 7 N -0.552 5.552 8 Si 0.711 3.289 9 H -0.221 1.221 10 H -0.238 1.238 11 H -0.178 1.178 12 C 0.070 3.930 13 H 0.046 0.954 14 C -0.164 4.164 15 C -0.122 4.122 16 H 0.115 0.885 17 C -0.201 4.201 18 C -0.132 4.132 19 C -0.137 4.137 20 H 0.156 0.844 21 C -0.195 4.195 22 C -0.129 4.129 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.492 -0.602 9.559 9.897 hybrid contribution 0.418 -1.056 0.053 1.137 sum 2.911 -1.658 9.612 10.179 Atomic orbital electron populations 1.22228 0.99237 0.99178 1.01694 1.21061 0.92463 0.87206 0.98424 1.44208 1.75521 1.11029 1.01985 1.18701 1.36426 0.95704 0.86285 0.89533 1.25388 0.98729 0.97712 0.95578 1.69784 1.48655 1.38702 0.98069 0.87054 0.78336 0.85589 0.77878 1.22148 1.23840 1.17761 1.20403 0.93695 0.91879 0.86987 0.95374 1.22045 0.96635 0.99956 0.97778 1.21371 0.93807 0.96338 1.00672 0.88495 1.21838 0.99085 0.99602 0.99575 1.21485 0.97934 0.95282 0.98504 1.21815 0.93035 0.95102 1.03729 0.84427 1.21764 1.00264 0.97905 0.99605 1.21433 0.97647 0.95737 0.98078 0.94582 0.93776 0.92258 0.93902 0.94134 0.92887 0.93420 0.93295 0.93642 0.93545 0.93654 0.93550 0.94122 0.94670 0.93826 0.93187 0.94073 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 10.24 37.16 0.38 -2.78 16 2 C 0.13 2.85 4.90 -4.04 -0.02 2.83 16 3 N -0.60 -13.48 1.54 -165.66 -0.25 -13.73 16 4 C -0.24 -6.25 6.25 -15.06 -0.09 -6.34 16 5 H 0.09 2.42 6.28 -52.48 -0.33 2.09 16 6 C 0.02 0.69 5.13 -17.43 -0.09 0.60 16 7 N -0.91 -26.95 13.97 55.49 0.78 -26.18 16 8 Si 0.88 21.73 23.70 -169.99 -4.03 17.70 16 9 H -0.29 -7.29 6.83 56.52 0.39 -6.90 16 10 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 11 H -0.25 -5.83 4.48 56.52 0.25 -5.58 16 12 C 0.18 3.44 3.32 -67.93 -0.23 3.21 16 13 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 14 C -0.12 -2.20 4.54 -26.73 -0.12 -2.33 16 15 C -0.10 -1.92 2.56 -90.62 -0.23 -2.15 16 16 H 0.10 2.10 3.90 -51.93 -0.20 1.90 16 17 C -0.14 -2.25 9.20 37.16 0.34 -1.91 16 18 C -0.09 -1.70 4.48 -26.74 -0.12 -1.82 16 19 C -0.12 -2.33 2.22 -90.62 -0.20 -2.54 16 20 H 0.14 3.28 4.44 -51.93 -0.23 3.05 16 21 C -0.14 -2.41 9.19 37.16 0.34 -2.07 16 22 C -0.09 -1.73 4.20 -26.73 -0.11 -1.84 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.04 1.01 2.42 -51.93 -0.13 0.88 16 27 H 0.04 0.79 6.35 -51.93 -0.33 0.46 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.85 6.61 -51.93 -0.34 0.51 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.23 7.05 -51.92 -0.37 0.87 16 LS Contribution 283.20 15.07 4.27 4.27 Total: -1.00 -27.28 283.20 -6.54 -33.82 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.14 Total: 1.24 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -0.15 Total: -17.12 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.52 Total: -39.91 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.03 Total: 17.70 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.28 -6.54 -33.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249991222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.567 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds