Wall clock time and date at job start Mon Mar 30 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47237 * 2 1 4 4 C 1.36933 * 120.00133 * 270.01430 * 3 2 1 5 5 H 1.08003 * 120.00014 * 144.81629 * 4 3 2 6 6 C 1.38814 * 120.00141 * 324.82090 * 4 3 2 7 7 N 1.31612 * 120.00107 * 164.42189 * 6 4 3 8 8 Si 1.86809 * 119.99589 * 344.42674 * 6 4 3 9 9 H 1.48491 * 109.47086 * 95.77182 * 8 6 4 10 10 H 1.48501 * 109.46790 * 215.77649 * 8 6 4 11 11 H 1.48495 * 109.46921 * 335.77059 * 8 6 4 12 12 C 1.46503 * 119.99974 * 90.00813 * 3 2 1 13 13 H 1.08995 * 109.47119 * 298.43918 * 12 3 2 14 14 C 1.52999 * 109.47013 * 58.44083 * 12 3 2 15 15 C 1.53000 * 109.47207 * 59.99783 * 14 12 3 16 16 H 1.09005 * 109.47004 * 299.99955 * 15 14 12 17 17 C 1.53006 * 109.47030 * 180.02562 * 15 14 12 18 18 C 1.52988 * 109.47236 * 60.00075 * 15 14 12 19 19 C 1.52996 * 109.47468 * 300.00195 * 18 15 14 20 20 H 1.09007 * 109.47261 * 300.00028 * 19 18 15 21 21 C 1.52997 * 109.47675 * 179.97438 * 19 18 15 22 22 C 1.52999 * 109.47234 * 178.43561 * 12 3 2 23 23 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47428 * 300.00037 * 1 2 3 25 25 H 1.09003 * 109.46757 * 60.00106 * 1 2 3 26 26 H 1.08997 * 109.47428 * 239.99963 * 2 1 3 27 27 H 1.09003 * 109.46757 * 119.99894 * 2 1 3 28 28 H 0.97003 * 119.99495 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47638 * 180.02562 * 14 12 3 30 30 H 1.09007 * 109.46778 * 299.99757 * 14 12 3 31 31 H 1.08995 * 109.47731 * 59.99562 * 17 15 14 32 32 H 1.08995 * 109.47136 * 180.02562 * 17 15 14 33 33 H 1.09005 * 109.46700 * 299.99541 * 17 15 14 34 34 H 1.09004 * 109.47570 * 179.97438 * 18 15 14 35 35 H 1.09005 * 109.47222 * 60.00013 * 18 15 14 36 36 H 1.08995 * 109.47339 * 300.00144 * 21 19 18 37 37 H 1.09007 * 109.46857 * 60.00074 * 21 19 18 38 38 H 1.08999 * 109.47419 * 179.97438 * 21 19 18 39 39 H 1.08995 * 109.46974 * 179.97438 * 22 12 3 40 40 H 1.09009 * 109.46884 * 60.00537 * 22 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2463 2.0268 -1.1859 5 1 2.0489 3.0852 -1.2711 6 6 2.7311 1.3210 -2.2784 7 7 2.6638 1.8459 -3.4835 8 14 3.4789 -0.3740 -2.0383 9 1 2.4475 -1.4109 -2.2953 10 1 4.6093 -0.5548 -2.9842 11 1 3.9744 -0.5033 -0.6444 12 6 2.2627 2.0717 1.2688 13 1 1.3302 2.1446 1.8282 14 6 3.2887 1.2859 2.0877 15 6 4.5978 1.1836 1.3023 16 1 4.4159 0.6698 0.3584 17 6 5.6236 0.3972 2.1211 18 6 5.1361 2.5881 1.0230 19 6 4.1102 3.3741 0.2041 20 1 3.9282 2.8603 -0.7399 21 6 4.6482 4.7789 -0.0747 22 6 2.8011 3.4764 0.9895 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0029 1.3527 -4.2469 29 1 3.4703 1.7994 3.0319 30 1 2.9052 0.2852 2.2867 31 1 5.2399 -0.6034 2.3198 32 1 6.5563 0.3247 1.5618 33 1 5.8055 0.9107 3.0652 34 1 6.0689 2.5153 0.4639 35 1 5.3179 3.1020 1.9670 36 1 4.8297 5.2925 0.8694 37 1 5.5809 4.7063 -0.6341 38 1 3.9174 5.3386 -0.6585 39 1 2.9825 3.9903 1.9334 40 1 2.0701 4.0363 0.4060 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249991222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:12 Heat of formation + Delta-G solvation = -6.044760 kcal Electronic energy + Delta-G solvation = -17643.443199 eV Core-core repulsion = 15264.756445 eV Total energy + Delta-G solvation = -2378.686754 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58788 -36.74327 -34.42074 -33.66670 -32.26183 -29.95388 -27.34442 -27.18625 -25.57538 -23.82344 -21.77852 -21.21262 -20.04077 -18.40729 -17.44226 -16.14056 -16.11655 -15.62034 -15.01663 -14.80889 -14.58594 -14.36371 -13.97853 -13.69450 -13.26733 -13.07763 -12.96316 -12.89280 -12.68344 -12.56119 -12.48357 -12.22474 -12.19234 -11.83462 -11.56805 -11.49828 -11.07111 -10.74787 -10.63517 -10.55242 -10.30308 -8.57372 -8.02753 -5.35951 1.32602 1.43729 1.52904 2.50606 3.21640 3.38529 4.00925 4.07095 4.14384 4.29269 4.45340 4.49746 4.59376 4.65033 4.74159 4.76779 4.83523 4.88787 4.91446 4.95082 5.00404 5.08156 5.10220 5.13511 5.16883 5.18597 5.20110 5.29746 5.39145 5.48170 5.66349 5.71791 5.72578 5.83696 6.07101 6.16659 6.34010 7.12558 7.78987 8.19268 9.15874 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.014658 C = 0.013346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.784651 B = 1909.728752 C = 2097.472057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 N -0.611 5.611 4 C -0.198 4.198 5 H 0.055 0.945 6 C -0.033 4.033 7 N -0.964 5.964 8 Si 0.927 3.073 9 H -0.297 1.297 10 H -0.331 1.331 11 H -0.223 1.223 12 C 0.168 3.832 13 H 0.041 0.959 14 C -0.116 4.116 15 C -0.109 4.109 16 H 0.060 0.940 17 C -0.138 4.138 18 C -0.089 4.089 19 C -0.121 4.121 20 H 0.089 0.911 21 C -0.133 4.133 22 C -0.088 4.088 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.254 0.746 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -1.207 13.385 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 N -0.336 5.336 4 C -0.328 4.328 5 H 0.072 0.928 6 C -0.226 4.226 7 N -0.611 5.611 8 Si 0.762 3.238 9 H -0.226 1.226 10 H -0.262 1.262 11 H -0.148 1.148 12 C 0.063 3.937 13 H 0.059 0.941 14 C -0.155 4.155 15 C -0.128 4.128 16 H 0.078 0.922 17 C -0.196 4.196 18 C -0.127 4.127 19 C -0.139 4.139 20 H 0.107 0.893 21 C -0.191 4.191 22 C -0.126 4.126 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.991 -1.205 13.290 13.676 hybrid contribution 0.201 -0.768 -1.001 1.278 sum 3.193 -1.974 12.289 12.849 Atomic orbital electron populations 1.22124 0.97626 1.00750 1.01022 1.21180 0.93809 0.86366 0.98520 1.44344 1.75791 1.11484 1.01976 1.18456 1.32824 0.94230 0.87298 0.92751 1.25840 1.00493 1.00889 0.95405 1.69918 1.51844 1.40442 0.98902 0.86261 0.76790 0.82156 0.78639 1.22596 1.26188 1.14775 1.20639 0.95114 0.92085 0.85830 0.94141 1.21957 0.95199 1.00177 0.98209 1.21359 0.95321 0.96453 0.99618 0.92178 1.21775 0.98114 0.99655 1.00006 1.21436 0.96925 0.95137 0.99180 1.21628 0.94411 0.95978 1.01848 0.89292 1.21701 0.99687 0.96860 1.00808 1.21410 0.96529 0.95648 0.98971 0.91955 0.92140 0.95150 0.96111 0.91488 0.93714 0.90527 0.92683 0.93094 0.93491 0.91436 0.93958 0.91477 0.91847 0.93833 0.94626 0.90937 0.94566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 10.24 71.98 0.74 -4.93 16 2 C 0.13 5.11 4.90 86.38 0.42 5.53 16 3 N -0.61 -26.65 1.54 -678.03 -1.04 -27.69 16 4 C -0.20 -10.45 6.25 84.03 0.52 -9.92 16 5 H 0.05 3.20 6.28 -2.91 -0.02 3.18 16 6 C -0.03 -1.86 5.13 84.86 0.44 -1.42 16 7 N -0.96 -60.30 13.97 21.65 0.30 -60.00 16 8 Si 0.93 46.14 23.70 68.60 1.63 47.76 16 9 H -0.30 -14.71 6.83 99.48 0.68 -14.03 16 10 H -0.33 -17.42 7.11 99.48 0.71 -16.71 16 11 H -0.22 -9.98 4.48 99.48 0.45 -9.53 16 12 C 0.17 6.07 3.32 44.99 0.15 6.22 16 13 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 14 C -0.12 -3.58 4.54 30.59 0.14 -3.44 16 15 C -0.11 -3.65 2.56 -10.80 -0.03 -3.68 16 16 H 0.06 2.47 3.90 -2.38 -0.01 2.46 16 17 C -0.14 -3.72 9.20 71.98 0.66 -3.06 16 18 C -0.09 -2.94 4.48 30.59 0.14 -2.80 16 19 C -0.12 -4.59 2.22 -10.80 -0.02 -4.61 16 20 H 0.09 4.34 4.44 -2.38 -0.01 4.33 16 21 C -0.13 -4.51 9.19 71.98 0.66 -3.85 16 22 C -0.09 -3.15 4.20 30.59 0.13 -3.02 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.02 0.96 2.42 -2.39 -0.01 0.96 16 27 H 0.07 2.38 6.35 -2.39 -0.02 2.36 16 28 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 1.64 6.61 -2.38 -0.02 1.63 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.04 1.45 7.05 -2.38 -0.02 1.43 16 Total: -1.00 -61.43 283.20 5.53 -55.90 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.70 Total: 13.02 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.95 Total: -28.99 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -0.74 Total: -87.69 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.63 Total: 47.76 kcal Total: -61.43 5.53 -55.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249991222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.856 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds