Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47524 * 2 1 4 4 C 1.53005 * 109.46953 * 119.99621 * 2 1 3 5 5 H 1.09005 * 109.46457 * 59.88056 * 4 2 1 6 6 C 1.53033 * 109.45448 * 299.90648 * 4 2 1 7 7 C 1.53123 * 109.27739 * 180.81081 * 6 4 2 8 8 C 1.53092 * 109.15653 * 57.65163 * 7 6 4 9 9 C 1.53036 * 109.29222 * 302.33853 * 8 7 6 10 10 N 1.46845 * 109.46166 * 179.85420 * 4 2 1 11 11 C 1.46899 * 111.00334 * 305.84584 * 10 4 2 12 12 H 1.09001 * 109.46944 * 55.93187 * 11 10 4 13 13 C 1.53000 * 109.47144 * 295.93513 * 11 10 4 14 14 C 1.50701 * 109.47137 * 175.93411 * 11 10 4 15 15 H 1.08002 * 120.00318 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99570 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00264 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99483 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47036 * 60.00333 * 18 16 14 20 20 H 1.48501 * 109.46840 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47299 * 300.00043 * 18 16 14 22 22 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47432 * 300.00480 * 1 2 3 24 24 H 1.08999 * 109.46909 * 59.99879 * 1 2 3 25 25 H 1.09002 * 109.47432 * 239.99520 * 2 1 3 26 26 H 1.08997 * 109.47364 * 183.51324 * 3 2 1 27 27 H 1.09001 * 109.46522 * 303.51162 * 3 2 1 28 28 H 1.08998 * 109.46955 * 63.50761 * 3 2 1 29 29 H 1.08996 * 109.50194 * 300.74717 * 6 4 2 30 30 H 1.08991 * 109.50807 * 60.86755 * 6 4 2 31 31 H 1.08995 * 109.52300 * 177.55924 * 7 6 4 32 32 H 1.08996 * 109.52248 * 297.68407 * 7 6 4 33 33 H 1.08999 * 109.49223 * 182.39885 * 8 7 6 34 34 H 1.09000 * 109.50854 * 62.29089 * 8 7 6 35 35 H 1.09002 * 109.45978 * 299.17640 * 9 8 7 36 36 H 1.08999 * 109.46424 * 179.19445 * 9 8 7 37 37 H 1.08999 * 109.47182 * 174.73001 * 13 11 10 38 38 H 1.09003 * 109.47310 * 294.73007 * 13 11 10 39 39 H 1.09004 * 109.47243 * 54.72776 * 13 11 10 40 40 H 0.97004 * 119.99772 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6747 -1.7483 1.2504 6 6 1.5315 0.0020 2.4985 7 6 2.0607 -0.7111 3.7460 8 6 3.5905 -0.7429 3.6954 9 6 4.0394 -1.4446 2.4117 10 7 3.5084 -0.7242 1.2474 11 6 4.0321 -1.2875 -0.0041 12 1 3.6249 -0.7339 -0.8502 13 6 3.6228 -2.7578 -0.1122 14 6 5.5354 -1.1827 -0.0118 15 1 6.0504 -0.7420 0.8291 16 6 6.2535 -1.6503 -1.0920 17 7 5.6265 -2.1873 -2.1157 18 14 8.1169 -1.5197 -1.1018 19 1 8.6720 -2.2730 0.0513 20 1 8.6464 -2.0904 -2.3664 21 1 8.5137 -0.0925 -0.9980 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 3.1282 1.4431 -0.0630 27 1 1.6262 1.9741 -0.8569 28 1 1.7290 1.9378 0.9197 29 1 1.8849 1.0330 2.4913 30 1 0.4417 -0.0097 2.5076 31 1 1.7368 -0.1741 4.6375 32 1 1.6750 -1.7301 3.7743 33 1 3.9717 -1.2867 4.5598 34 1 3.9764 0.2764 3.7071 35 1 3.6648 -2.4682 2.4072 36 1 5.1284 -1.4562 2.3659 37 1 3.9301 -3.1502 -1.0815 38 1 4.1061 -3.3287 0.6807 39 1 2.5406 -2.8420 -0.0126 40 1 6.1318 -2.5166 -2.8755 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251305677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -15.667121 kcal Electronic energy + Delta-G solvation = -17206.242357 eV Core-core repulsion = 14827.138346 eV Total energy + Delta-G solvation = -2379.104011 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.16193 -34.62607 -34.20321 -31.80935 -28.93090 -28.02794 -26.66548 -25.22642 -23.39347 -23.16708 -20.23278 -19.78767 -17.71371 -16.12846 -15.43771 -14.66999 -14.32833 -14.08652 -13.76464 -13.48347 -12.88791 -12.62619 -12.48185 -12.19830 -11.72676 -11.62397 -11.47509 -10.98279 -10.91363 -10.74394 -10.68710 -10.52779 -10.40267 -10.35012 -10.13253 -9.93943 -9.85044 -9.58665 -9.12658 -8.72104 -8.29597 -6.97926 -5.96283 -3.98762 3.34782 3.39070 3.42062 4.45037 4.95798 5.27752 5.30407 5.36255 5.43945 5.56435 5.64585 5.79657 5.87123 6.03986 6.11777 6.13782 6.21612 6.24958 6.33256 6.39510 6.41234 6.48483 6.54564 6.64216 6.70202 6.79933 6.90393 6.93885 6.95060 7.00982 7.08801 7.25464 7.63852 7.79277 7.90759 8.24698 8.48922 8.72666 9.07546 9.65772 11.11083 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.009638 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.696996 B = 2904.430586 C = 3379.697755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.135 4.135 4 C 0.090 3.910 5 H 0.029 0.971 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.118 4.118 9 C 0.063 3.937 10 N -0.523 5.523 11 C 0.209 3.791 12 H 0.048 0.952 13 C -0.170 4.170 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.277 1.277 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.020 0.980 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.028 0.972 39 H 0.007 0.993 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 3.097 6.995 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.192 4.192 4 C -0.019 4.019 5 H 0.047 0.953 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.065 4.065 10 N -0.247 5.247 11 C 0.103 3.897 12 H 0.065 0.935 13 C -0.229 4.229 14 C -0.538 4.538 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.203 1.203 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.026 0.974 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.578 3.506 6.842 10.795 hybrid contribution 0.741 -0.992 -0.154 1.248 sum -6.836 2.514 6.688 9.889 Atomic orbital electron populations 1.21889 0.96435 1.00927 1.01024 1.21169 0.93918 0.97343 0.98682 1.21729 1.02966 0.94900 0.99600 1.21489 0.90280 0.96429 0.93657 0.95314 1.21727 0.98783 1.00354 0.94194 1.21553 0.96592 0.99882 0.97541 1.21630 0.95034 1.01315 0.97569 1.21922 1.00959 0.94107 0.89523 1.62237 1.04064 1.54555 1.03856 1.19338 0.94603 0.89378 0.86428 0.93462 1.22384 0.95491 1.01772 1.03236 1.21116 0.90890 1.38517 1.03263 0.92109 1.24912 0.98290 0.95447 0.95580 1.69889 1.35187 1.41071 1.07253 0.86634 0.85823 0.78317 0.77034 1.20486 1.21491 1.20291 0.93416 0.92918 0.93218 0.90440 0.90802 0.94481 0.93452 0.91180 0.92623 0.93006 0.93026 0.92929 0.91716 0.96224 0.90007 0.89905 0.95331 0.97403 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.84 37.15 0.33 -1.73 16 2 C -0.09 -1.61 2.22 -90.62 -0.20 -1.81 16 3 C -0.13 -2.28 8.67 37.16 0.32 -1.95 16 4 C 0.09 1.65 1.21 -67.72 -0.08 1.57 16 5 H 0.03 0.57 6.59 -51.93 -0.34 0.22 16 6 C -0.11 -1.74 4.67 -26.65 -0.12 -1.86 16 7 C -0.12 -1.73 6.00 -26.62 -0.16 -1.89 16 8 C -0.12 -1.90 6.09 -26.67 -0.16 -2.06 16 9 C 0.06 1.25 4.68 -3.83 -0.02 1.24 16 10 N -0.52 -11.00 3.79 -220.13 -0.83 -11.83 16 11 C 0.21 5.14 1.84 -68.86 -0.13 5.02 16 12 H 0.05 1.27 5.81 -51.93 -0.30 0.97 16 13 C -0.17 -4.14 8.17 37.16 0.30 -3.84 16 14 C -0.50 -13.52 7.86 -34.44 -0.27 -13.79 16 15 H 0.06 1.65 6.69 -52.49 -0.35 1.30 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -25.45 11.38 55.43 0.63 -24.82 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.68 6.45 -51.93 -0.33 0.34 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.56 6.23 -51.93 -0.32 1.24 16 26 H 0.07 1.46 7.51 -51.93 -0.39 1.07 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.73 6.23 -51.93 -0.32 0.40 16 29 H 0.07 1.10 6.31 -51.93 -0.33 0.77 16 30 H 0.06 0.76 6.48 -51.93 -0.34 0.43 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.40 6.75 -51.93 -0.35 0.05 16 36 H 0.08 1.77 6.28 -51.93 -0.33 1.45 16 37 H 0.08 2.22 6.23 -51.93 -0.32 1.90 16 38 H 0.03 0.69 6.84 -51.93 -0.35 0.33 16 39 H 0.01 0.16 6.38 -51.93 -0.33 -0.17 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -27.24 287.65 -7.99 -35.23 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.81 Total: 0.28 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -0.29 Total: -19.60 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.20 Total: -36.65 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.24 -7.99 -35.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251305677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.562 kcal (2) G-P(sol) polarization free energy of solvation -27.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds