Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47524 * 2 1 4 4 C 1.53005 * 109.46953 * 119.99621 * 2 1 3 5 5 H 1.09005 * 109.46457 * 59.88056 * 4 2 1 6 6 C 1.53033 * 109.45448 * 299.90648 * 4 2 1 7 7 C 1.53123 * 109.27739 * 180.81081 * 6 4 2 8 8 C 1.53092 * 109.15653 * 57.65163 * 7 6 4 9 9 C 1.53036 * 109.29222 * 302.33853 * 8 7 6 10 10 N 1.46845 * 109.46166 * 179.85420 * 4 2 1 11 11 C 1.46899 * 111.00334 * 305.84584 * 10 4 2 12 12 H 1.09001 * 109.46944 * 55.93187 * 11 10 4 13 13 C 1.53000 * 109.47144 * 295.93513 * 11 10 4 14 14 C 1.50701 * 109.47137 * 175.93411 * 11 10 4 15 15 H 1.08002 * 120.00318 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99570 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00264 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99483 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47036 * 60.00333 * 18 16 14 20 20 H 1.48501 * 109.46840 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47299 * 300.00043 * 18 16 14 22 22 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47432 * 300.00480 * 1 2 3 24 24 H 1.08999 * 109.46909 * 59.99879 * 1 2 3 25 25 H 1.09002 * 109.47432 * 239.99520 * 2 1 3 26 26 H 1.08997 * 109.47364 * 183.51324 * 3 2 1 27 27 H 1.09001 * 109.46522 * 303.51162 * 3 2 1 28 28 H 1.08998 * 109.46955 * 63.50761 * 3 2 1 29 29 H 1.08996 * 109.50194 * 300.74717 * 6 4 2 30 30 H 1.08991 * 109.50807 * 60.86755 * 6 4 2 31 31 H 1.08995 * 109.52300 * 177.55924 * 7 6 4 32 32 H 1.08996 * 109.52248 * 297.68407 * 7 6 4 33 33 H 1.08999 * 109.49223 * 182.39885 * 8 7 6 34 34 H 1.09000 * 109.50854 * 62.29089 * 8 7 6 35 35 H 1.09002 * 109.45978 * 299.17640 * 9 8 7 36 36 H 1.08999 * 109.46424 * 179.19445 * 9 8 7 37 37 H 1.08999 * 109.47182 * 174.73001 * 13 11 10 38 38 H 1.09003 * 109.47310 * 294.73007 * 13 11 10 39 39 H 1.09004 * 109.47243 * 54.72776 * 13 11 10 40 40 H 0.97004 * 119.99772 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6747 -1.7483 1.2504 6 6 1.5315 0.0020 2.4985 7 6 2.0607 -0.7111 3.7460 8 6 3.5905 -0.7429 3.6954 9 6 4.0394 -1.4446 2.4117 10 7 3.5084 -0.7242 1.2474 11 6 4.0321 -1.2875 -0.0041 12 1 3.6249 -0.7339 -0.8502 13 6 3.6228 -2.7578 -0.1122 14 6 5.5354 -1.1827 -0.0118 15 1 6.0504 -0.7420 0.8291 16 6 6.2535 -1.6503 -1.0920 17 7 5.6265 -2.1873 -2.1157 18 14 8.1169 -1.5197 -1.1018 19 1 8.6720 -2.2730 0.0513 20 1 8.6464 -2.0904 -2.3664 21 1 8.5137 -0.0925 -0.9980 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 3.1282 1.4431 -0.0630 27 1 1.6262 1.9741 -0.8569 28 1 1.7290 1.9378 0.9197 29 1 1.8849 1.0330 2.4913 30 1 0.4417 -0.0097 2.5076 31 1 1.7368 -0.1741 4.6375 32 1 1.6750 -1.7301 3.7743 33 1 3.9717 -1.2867 4.5598 34 1 3.9764 0.2764 3.7071 35 1 3.6648 -2.4682 2.4072 36 1 5.1284 -1.4562 2.3659 37 1 3.9301 -3.1502 -1.0815 38 1 4.1061 -3.3287 0.6807 39 1 2.5406 -2.8420 -0.0126 40 1 6.1318 -2.5166 -2.8755 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251305677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -30.752508 kcal Electronic energy + Delta-G solvation = -17206.896509 eV Core-core repulsion = 14827.138346 eV Total energy + Delta-G solvation = -2379.758162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69001 -36.27511 -35.70082 -33.70711 -30.31540 -29.84430 -27.95425 -27.30243 -24.98226 -24.57540 -21.96610 -21.17512 -19.23135 -18.17097 -17.11473 -16.36249 -15.88670 -15.69932 -15.20499 -14.93800 -14.38399 -14.19323 -14.06462 -13.61555 -13.44115 -13.16323 -12.90572 -12.82456 -12.63136 -12.48571 -12.24270 -12.23085 -11.92837 -11.81077 -11.78697 -11.60838 -11.27210 -11.04100 -10.70307 -10.67566 -10.34159 -8.69974 -8.08483 -6.17620 1.41451 1.42747 1.50177 2.43514 3.20729 3.41532 3.94929 4.00284 4.14163 4.25016 4.40051 4.46549 4.56094 4.60828 4.77212 4.79863 4.83859 4.92237 4.92986 4.95521 5.05797 5.09554 5.16154 5.19265 5.23233 5.25817 5.30484 5.34324 5.44141 5.56087 5.59429 5.65262 5.69381 5.81309 5.86327 6.27234 6.60262 6.91222 6.98778 7.51148 8.97758 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028898 B = 0.009638 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.696996 B = 2904.430586 C = 3379.697755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.127 4.127 4 C 0.088 3.912 5 H 0.014 0.986 6 C -0.107 4.107 7 C -0.115 4.115 8 C -0.110 4.110 9 C 0.063 3.937 10 N -0.527 5.527 11 C 0.216 3.784 12 H 0.020 0.980 13 C -0.153 4.153 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.921 5.921 18 Si 0.955 3.045 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.009 0.991 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 4.012 8.764 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.184 4.184 4 C -0.021 4.021 5 H 0.032 0.968 6 C -0.145 4.145 7 C -0.152 4.152 8 C -0.148 4.148 9 C -0.066 4.066 10 N -0.251 5.251 11 C 0.109 3.891 12 H 0.038 0.962 13 C -0.212 4.212 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.561 5.561 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.670 4.428 8.627 13.008 hybrid contribution 1.058 -1.280 -0.712 1.807 sum -7.612 3.148 7.915 11.424 Atomic orbital electron populations 1.21815 0.93381 1.01575 1.02658 1.21147 0.96430 0.97016 0.96674 1.21636 1.00503 0.94970 1.01275 1.21632 0.88199 0.96303 0.95920 0.96766 1.21713 1.00289 0.99794 0.92657 1.21556 0.94917 1.00404 0.98354 1.21579 0.96624 1.00840 0.95784 1.21928 0.99406 0.94128 0.91088 1.62179 1.06186 1.54111 1.02634 1.19041 0.93498 0.88983 0.87567 0.96222 1.22170 0.96196 1.01603 1.01240 1.21401 0.92400 1.38274 1.03057 0.92760 1.25662 1.02565 0.95234 0.95293 1.70023 1.36633 1.41781 1.07697 0.85666 0.80739 0.78397 0.77134 1.19878 1.21125 1.19815 0.93289 0.90706 0.92153 0.94350 0.94485 0.93197 0.91337 0.91123 0.89996 0.89898 0.92883 0.90888 0.91881 0.97305 0.92654 0.92611 0.95963 0.95983 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.84 71.98 0.64 -2.92 16 2 C -0.09 -3.23 2.22 -10.79 -0.02 -3.25 16 3 C -0.13 -4.18 8.67 71.98 0.62 -3.56 16 4 C 0.09 3.13 1.21 44.94 0.05 3.19 16 5 H 0.01 0.56 6.59 -2.38 -0.02 0.54 16 6 C -0.11 -2.95 4.67 30.65 0.14 -2.80 16 7 C -0.11 -2.95 6.00 30.67 0.18 -2.76 16 8 C -0.11 -3.32 6.09 30.64 0.19 -3.14 16 9 C 0.06 2.50 4.68 86.32 0.40 2.90 16 10 N -0.53 -22.46 3.79 -850.37 -3.22 -25.67 16 11 C 0.22 11.08 1.84 44.17 0.08 11.16 16 12 H 0.02 1.13 5.81 -2.39 -0.01 1.12 16 13 C -0.15 -7.74 8.17 71.98 0.59 -7.15 16 14 C -0.51 -28.65 7.86 25.60 0.20 -28.45 16 15 H 0.05 3.04 6.69 -2.91 -0.02 3.02 16 16 C 0.01 0.60 5.30 84.66 0.45 1.05 16 17 N -0.92 -53.99 11.38 21.45 0.24 -53.75 16 18 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.07 1.62 6.45 -2.39 -0.02 1.61 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.61 6.23 -2.39 -0.01 1.59 16 26 H 0.04 1.48 7.51 -2.39 -0.02 1.46 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.95 6.23 -2.39 -0.01 1.93 16 29 H 0.07 1.97 6.31 -2.39 -0.02 1.95 16 30 H 0.08 1.87 6.48 -2.39 -0.02 1.85 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.01 0.36 6.75 -2.39 -0.02 0.35 16 36 H 0.05 2.45 6.28 -2.39 -0.02 2.44 16 37 H 0.06 3.12 6.23 -2.39 -0.01 3.10 16 38 H 0.02 1.10 6.84 -2.39 -0.02 1.08 16 39 H 0.02 1.00 6.38 -2.39 -0.02 0.99 16 40 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -60.27 287.65 3.57 -56.70 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.99 Total: 11.80 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 3.53 Total: -35.73 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -2.98 Total: -79.43 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.27 3.57 -56.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251305677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.944 kcal (2) G-P(sol) polarization free energy of solvation -60.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds