Wall clock time and date at job start Mon Mar 30 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.46981 * 2 1 4 4 C 1.53002 * 109.47325 * 120.00316 * 2 1 3 5 5 H 1.09002 * 109.45855 * 178.43651 * 4 2 1 6 6 C 1.53035 * 109.46084 * 298.41900 * 4 2 1 7 7 C 1.53114 * 109.27673 * 179.18498 * 6 4 2 8 8 C 1.53116 * 109.16142 * 302.34688 * 7 6 4 9 9 C 1.53034 * 109.27986 * 57.65358 * 8 7 6 10 10 N 1.46843 * 109.45219 * 58.46582 * 4 2 1 11 11 C 1.46903 * 111.00308 * 54.15088 * 10 4 2 12 12 H 1.08999 * 109.47218 * 307.45859 * 11 10 4 13 13 C 1.53000 * 109.47386 * 187.46046 * 11 10 4 14 14 C 1.50698 * 109.46845 * 67.45761 * 11 10 4 15 15 H 1.07997 * 120.00524 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99920 * 179.97438 * 14 11 10 17 17 N 1.31521 * 120.00022 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00305 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46963 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47011 * 120.00036 * 18 16 14 21 21 H 1.48495 * 109.47273 * 240.00510 * 18 16 14 22 22 H 1.09007 * 109.47065 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47005 * 299.99446 * 1 2 3 24 24 H 1.08994 * 109.47559 * 59.99867 * 1 2 3 25 25 H 1.09003 * 109.46523 * 239.99978 * 2 1 3 26 26 H 1.09003 * 109.47374 * 173.58630 * 3 2 1 27 27 H 1.09004 * 109.47704 * 293.58691 * 3 2 1 28 28 H 1.08999 * 109.47045 * 53.58458 * 3 2 1 29 29 H 1.09000 * 109.50179 * 299.12196 * 6 4 2 30 30 H 1.08995 * 109.50551 * 59.24277 * 6 4 2 31 31 H 1.09003 * 109.52504 * 62.24740 * 7 6 4 32 32 H 1.09002 * 109.52649 * 182.37322 * 7 6 4 33 33 H 1.09011 * 109.50361 * 177.59601 * 8 7 6 34 34 H 1.09003 * 109.50018 * 297.66928 * 8 7 6 35 35 H 1.08994 * 109.46442 * 60.83801 * 9 8 7 36 36 H 1.09001 * 109.45850 * 180.81779 * 9 8 7 37 37 H 1.08992 * 109.47366 * 172.95327 * 13 11 10 38 38 H 1.09007 * 109.46885 * 292.94770 * 13 11 10 39 39 H 1.09000 * 109.47059 * 52.94635 * 13 11 10 40 40 H 0.96999 * 120.00011 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1297 -0.7455 1.2350 6 6 1.5626 0.0228 2.4983 7 6 2.0581 -0.7138 3.7458 8 6 1.5430 -2.1554 3.7161 9 6 2.0210 -2.8363 2.4317 10 7 1.5203 -2.0946 1.2674 11 6 1.8429 -2.7962 0.0177 12 1 1.5120 -2.1976 -0.8309 13 6 1.1313 -4.1505 -0.0052 14 6 3.3322 -3.0097 -0.0684 15 1 3.9748 -2.6597 0.7259 16 6 3.8744 -3.6530 -1.1608 17 7 3.0918 -4.0798 -2.1279 18 14 5.7205 -3.9171 -1.2680 19 1 6.3729 -3.3476 -0.0616 20 1 6.0087 -5.3718 -1.3460 21 1 6.2475 -3.2423 -2.4813 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 3.1239 1.4446 0.1148 27 1 1.7734 1.9222 -0.9418 28 1 1.5859 1.9883 0.8270 29 1 1.9614 1.0372 2.4922 30 1 0.4733 0.0595 2.5060 31 1 3.1481 -0.7167 3.7583 32 1 1.6850 -0.2109 4.6381 33 1 1.9277 -2.6972 4.5802 34 1 0.4533 -2.1530 3.7437 35 1 3.1107 -2.8506 2.4120 36 1 1.6437 -3.8585 2.4006 37 1 1.2678 -4.6162 -0.9811 38 1 1.5518 -4.7949 0.7669 39 1 0.0675 -4.0051 0.1825 40 1 3.4733 -4.5320 -2.8966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251305679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:03 Heat of formation + Delta-G solvation = -18.222952 kcal Electronic energy + Delta-G solvation = -17291.585653 eV Core-core repulsion = 14912.370813 eV Total energy + Delta-G solvation = -2379.214840 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.01170 -34.56657 -34.15829 -31.73985 -28.83981 -28.25599 -26.60299 -25.10371 -23.34166 -23.02424 -19.84031 -19.75066 -18.12281 -15.98584 -15.42173 -14.63109 -14.31882 -14.06924 -13.72846 -13.26092 -12.85289 -12.68983 -12.40613 -12.10972 -11.87974 -11.44612 -11.27769 -11.04351 -10.94916 -10.70905 -10.50875 -10.46165 -10.33919 -10.24525 -10.10113 -9.96494 -9.69162 -9.42042 -9.22384 -8.87119 -8.31390 -6.99957 -5.94813 -4.06310 3.27004 3.35764 3.39111 4.42853 5.02738 5.30613 5.37988 5.39716 5.49223 5.65982 5.71681 5.87779 5.96522 6.12330 6.19832 6.20856 6.29472 6.35180 6.40216 6.44669 6.48053 6.57678 6.63309 6.67371 6.81216 6.87240 7.00342 7.05671 7.08063 7.13507 7.17184 7.31163 7.67135 7.78221 8.06583 8.25813 8.43458 8.55785 9.04905 9.60905 11.05295 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024272 B = 0.010623 C = 0.009704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.301287 B = 2635.187398 C = 2884.640241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.143 4.143 4 C 0.102 3.898 5 H 0.038 0.962 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.117 4.117 9 C 0.063 3.937 10 N -0.529 5.529 11 C 0.202 3.798 12 H 0.047 0.953 13 C -0.127 4.127 14 C -0.537 4.537 15 H 0.055 0.945 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.883 3.117 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 6.692 6.895 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.007 4.007 5 H 0.056 0.944 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.155 4.155 9 C -0.066 4.066 10 N -0.254 5.254 11 C 0.096 3.904 12 H 0.065 0.935 13 C -0.186 4.186 14 C -0.576 4.576 15 H 0.073 0.927 16 C -0.134 4.134 17 N -0.526 5.526 18 Si 0.712 3.288 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.033 0.967 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.757 6.617 6.755 10.175 hybrid contribution 2.116 -0.327 -0.210 2.151 sum -1.642 6.290 6.544 9.225 Atomic orbital electron populations 1.21724 0.95520 1.02407 0.99400 1.21153 0.95895 0.94651 0.99350 1.21857 1.00649 0.96954 1.00607 1.21314 0.96776 0.89726 0.92902 0.94371 1.21741 1.01162 0.97757 0.94511 1.21546 1.00110 0.96369 0.97518 1.21630 1.00792 0.95412 0.97643 1.21864 0.97873 0.97263 0.89597 1.62421 1.57984 1.01023 1.03937 1.19353 0.93146 0.91254 0.86649 0.93484 1.21770 0.95692 0.98917 1.02176 1.21760 0.93422 1.37418 1.05021 0.92736 1.24892 0.97341 0.95464 0.95722 1.69908 1.34242 1.39407 1.09040 0.86679 0.86472 0.77813 0.77873 1.20033 1.21098 1.21088 0.91359 0.93662 0.94560 0.89814 0.93204 0.93459 0.93235 0.92671 0.91575 0.92875 0.93162 0.93028 0.92063 0.94774 0.91492 0.90394 0.95551 0.96742 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.60 37.16 0.32 -1.91 16 2 C -0.09 -1.67 2.21 -90.62 -0.20 -1.88 16 3 C -0.14 -2.19 8.60 37.15 0.32 -1.87 16 4 C 0.10 1.95 1.37 -67.72 -0.09 1.86 16 5 H 0.04 0.83 7.12 -51.93 -0.37 0.46 16 6 C -0.11 -1.82 4.66 -26.65 -0.12 -1.94 16 7 C -0.12 -1.79 6.00 -26.61 -0.16 -1.95 16 8 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 9 C 0.06 1.24 4.79 -3.84 -0.02 1.22 16 10 N -0.53 -11.05 3.66 -220.15 -0.81 -11.86 16 11 C 0.20 4.93 1.76 -68.86 -0.12 4.81 16 12 H 0.05 1.25 5.63 -51.93 -0.29 0.96 16 13 C -0.13 -3.09 8.53 37.16 0.32 -2.77 16 14 C -0.54 -14.31 7.20 -34.44 -0.25 -14.56 16 15 H 0.05 1.49 5.84 -52.49 -0.31 1.18 16 16 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 17 N -0.89 -24.98 11.40 55.43 0.63 -24.35 16 18 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H 0.07 1.28 7.24 -51.93 -0.38 0.90 16 23 H 0.04 0.69 6.45 -51.93 -0.33 0.35 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.81 6.26 -51.93 -0.32 1.49 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.68 6.79 -51.93 -0.35 0.32 16 29 H 0.05 0.80 6.60 -51.93 -0.34 0.46 16 30 H 0.07 1.05 6.43 -51.93 -0.33 0.71 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.75 6.49 -51.93 -0.34 0.41 16 36 H 0.07 1.37 6.27 -51.93 -0.33 1.05 16 37 H 0.08 2.06 6.29 -51.93 -0.33 1.73 16 38 H 0.03 0.62 6.71 -51.93 -0.35 0.27 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -26.92 288.58 -8.00 -34.91 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.89 Total: -0.06 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -0.27 Total: -19.28 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.17 Total: -36.21 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.92 -8.00 -34.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251305679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.691 kcal (2) G-P(sol) polarization free energy of solvation -26.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds