Wall clock time and date at job start Mon Mar 30 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.46981 * 2 1 4 4 C 1.53002 * 109.47325 * 120.00316 * 2 1 3 5 5 H 1.09002 * 109.45855 * 178.43651 * 4 2 1 6 6 C 1.53035 * 109.46084 * 298.41900 * 4 2 1 7 7 C 1.53114 * 109.27673 * 179.18498 * 6 4 2 8 8 C 1.53116 * 109.16142 * 302.34688 * 7 6 4 9 9 C 1.53034 * 109.27986 * 57.65358 * 8 7 6 10 10 N 1.46843 * 109.45219 * 58.46582 * 4 2 1 11 11 C 1.46903 * 111.00308 * 54.15088 * 10 4 2 12 12 H 1.08999 * 109.47218 * 307.45859 * 11 10 4 13 13 C 1.53000 * 109.47386 * 187.46046 * 11 10 4 14 14 C 1.50698 * 109.46845 * 67.45761 * 11 10 4 15 15 H 1.07997 * 120.00524 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99920 * 179.97438 * 14 11 10 17 17 N 1.31521 * 120.00022 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00305 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46963 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47011 * 120.00036 * 18 16 14 21 21 H 1.48495 * 109.47273 * 240.00510 * 18 16 14 22 22 H 1.09007 * 109.47065 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47005 * 299.99446 * 1 2 3 24 24 H 1.08994 * 109.47559 * 59.99867 * 1 2 3 25 25 H 1.09003 * 109.46523 * 239.99978 * 2 1 3 26 26 H 1.09003 * 109.47374 * 173.58630 * 3 2 1 27 27 H 1.09004 * 109.47704 * 293.58691 * 3 2 1 28 28 H 1.08999 * 109.47045 * 53.58458 * 3 2 1 29 29 H 1.09000 * 109.50179 * 299.12196 * 6 4 2 30 30 H 1.08995 * 109.50551 * 59.24277 * 6 4 2 31 31 H 1.09003 * 109.52504 * 62.24740 * 7 6 4 32 32 H 1.09002 * 109.52649 * 182.37322 * 7 6 4 33 33 H 1.09011 * 109.50361 * 177.59601 * 8 7 6 34 34 H 1.09003 * 109.50018 * 297.66928 * 8 7 6 35 35 H 1.08994 * 109.46442 * 60.83801 * 9 8 7 36 36 H 1.09001 * 109.45850 * 180.81779 * 9 8 7 37 37 H 1.08992 * 109.47366 * 172.95327 * 13 11 10 38 38 H 1.09007 * 109.46885 * 292.94770 * 13 11 10 39 39 H 1.09000 * 109.47059 * 52.94635 * 13 11 10 40 40 H 0.96999 * 120.00011 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1297 -0.7455 1.2350 6 6 1.5626 0.0228 2.4983 7 6 2.0581 -0.7138 3.7458 8 6 1.5430 -2.1554 3.7161 9 6 2.0210 -2.8363 2.4317 10 7 1.5203 -2.0946 1.2674 11 6 1.8429 -2.7962 0.0177 12 1 1.5120 -2.1976 -0.8309 13 6 1.1313 -4.1505 -0.0052 14 6 3.3322 -3.0097 -0.0684 15 1 3.9748 -2.6597 0.7259 16 6 3.8744 -3.6530 -1.1608 17 7 3.0918 -4.0798 -2.1279 18 14 5.7205 -3.9171 -1.2680 19 1 6.3729 -3.3476 -0.0616 20 1 6.0087 -5.3718 -1.3460 21 1 6.2475 -3.2423 -2.4813 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 3.1239 1.4446 0.1148 27 1 1.7734 1.9222 -0.9418 28 1 1.5859 1.9883 0.8270 29 1 1.9614 1.0372 2.4922 30 1 0.4733 0.0595 2.5060 31 1 3.1481 -0.7167 3.7583 32 1 1.6850 -0.2109 4.6381 33 1 1.9277 -2.6972 4.5802 34 1 0.4533 -2.1530 3.7437 35 1 3.1107 -2.8506 2.4120 36 1 1.6437 -3.8585 2.4006 37 1 1.2678 -4.6162 -0.9811 38 1 1.5518 -4.7949 0.7669 39 1 0.0675 -4.0051 0.1825 40 1 3.4733 -4.5320 -2.8966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251305679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:03 Heat of formation + Delta-G solvation = -32.843967 kcal Electronic energy + Delta-G solvation = -17292.219668 eV Core-core repulsion = 14912.370813 eV Total energy + Delta-G solvation = -2379.848855 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57278 -36.25880 -35.67607 -33.64027 -30.25641 -30.07216 -27.92026 -27.20514 -24.92413 -24.46363 -21.61863 -21.18539 -19.76040 -17.94007 -17.14212 -16.40476 -15.86467 -15.64219 -15.10460 -14.98225 -14.45845 -14.17708 -14.00109 -13.51608 -13.34292 -13.21897 -12.97306 -12.78774 -12.57595 -12.40793 -12.18450 -12.10028 -12.01704 -11.77334 -11.70319 -11.51985 -11.31870 -11.08127 -10.84706 -10.62162 -10.33095 -8.82739 -8.02382 -6.23273 1.32095 1.35311 1.44475 2.38719 3.16316 3.45042 4.00699 4.05181 4.15998 4.30061 4.40932 4.50596 4.60685 4.68173 4.85904 4.89458 4.92182 4.95461 4.98646 5.07964 5.11050 5.13730 5.19558 5.23739 5.26924 5.30244 5.34721 5.39096 5.45253 5.56769 5.61220 5.68143 5.71868 5.80506 6.05352 6.27883 6.45661 6.81395 7.00546 7.47056 8.92997 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024272 B = 0.010623 C = 0.009704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.301287 B = 2635.187398 C = 2884.640241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.136 4.136 4 C 0.101 3.899 5 H 0.003 0.997 6 C -0.107 4.107 7 C -0.116 4.116 8 C -0.109 4.109 9 C 0.062 3.938 10 N -0.524 5.524 11 C 0.208 3.792 12 H 0.023 0.977 13 C -0.115 4.115 14 C -0.541 4.541 15 H 0.042 0.958 16 C 0.021 3.979 17 N -0.912 5.912 18 Si 0.941 3.059 19 H -0.275 1.275 20 H -0.280 1.280 21 H -0.281 1.281 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.007 0.993 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 8.210 8.616 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.112 4.112 3 C -0.193 4.193 4 C -0.008 4.008 5 H 0.021 0.979 6 C -0.144 4.144 7 C -0.154 4.154 8 C -0.147 4.147 9 C -0.067 4.067 10 N -0.248 5.248 11 C 0.101 3.899 12 H 0.040 0.960 13 C -0.173 4.173 14 C -0.581 4.581 15 H 0.060 0.940 16 C -0.178 4.178 17 N -0.552 5.552 18 Si 0.767 3.233 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.207 1.207 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.186 8.141 8.487 12.484 hybrid contribution 2.240 -0.801 -0.753 2.495 sum -1.946 7.341 7.734 10.839 Atomic orbital electron populations 1.21630 0.94052 1.01319 1.01143 1.21108 0.97091 0.96049 0.96916 1.21792 1.00274 0.94951 1.02314 1.21408 0.94776 0.89171 0.95455 0.97855 1.21708 1.01675 0.98291 0.92754 1.21563 0.99688 0.95701 0.98446 1.21578 1.01281 0.96050 0.95750 1.21910 0.96174 0.97346 0.91264 1.62417 1.57750 1.01812 1.02776 1.19116 0.91833 0.91178 0.87793 0.95966 1.21594 0.96604 0.98614 1.00533 1.21933 0.94641 1.36931 1.04551 0.93970 1.25560 1.01108 0.95538 0.95599 1.70019 1.35682 1.40053 1.09439 0.85778 0.81996 0.77762 0.77729 1.20011 1.20604 1.20662 0.93836 0.91318 0.93332 0.94436 0.93910 0.92383 0.90664 0.90585 0.90620 0.93728 0.89803 0.91031 0.91181 0.97514 0.92658 0.92846 0.95867 0.95192 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.60 71.98 0.62 -3.38 16 2 C -0.09 -3.37 2.21 -10.80 -0.02 -3.39 16 3 C -0.14 -3.91 8.60 71.98 0.62 -3.29 16 4 C 0.10 3.83 1.37 44.94 0.06 3.89 16 5 H 0.00 0.15 7.12 -2.39 -0.02 0.14 16 6 C -0.11 -3.09 4.66 30.64 0.14 -2.94 16 7 C -0.12 -3.16 6.00 30.67 0.18 -2.98 16 8 C -0.11 -3.25 6.09 30.64 0.19 -3.06 16 9 C 0.06 2.44 4.79 86.32 0.41 2.86 16 10 N -0.52 -22.07 3.66 -850.41 -3.11 -25.18 16 11 C 0.21 10.51 1.76 44.17 0.08 10.59 16 12 H 0.02 1.25 5.63 -2.39 -0.01 1.24 16 13 C -0.12 -5.74 8.53 71.98 0.61 -5.13 16 14 C -0.54 -29.87 7.20 25.60 0.18 -29.68 16 15 H 0.04 2.39 5.84 -2.91 -0.02 2.37 16 16 C 0.02 1.20 5.30 84.65 0.45 1.65 16 17 N -0.91 -52.84 11.40 21.45 0.24 -52.60 16 18 Si 0.94 44.62 29.54 68.60 2.03 46.65 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H 0.04 1.60 7.24 -2.38 -0.02 1.58 16 23 H 0.07 1.87 6.45 -2.38 -0.02 1.86 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.04 1.70 6.26 -2.39 -0.01 1.68 16 26 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.79 6.79 -2.39 -0.02 1.77 16 29 H 0.08 1.91 6.60 -2.39 -0.02 1.90 16 30 H 0.08 2.09 6.43 -2.39 -0.02 2.07 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.01 0.30 6.49 -2.39 -0.02 0.28 16 36 H 0.05 2.28 6.27 -2.39 -0.01 2.26 16 37 H 0.05 2.91 6.29 -2.39 -0.02 2.90 16 38 H 0.02 1.12 6.71 -2.38 -0.02 1.10 16 39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -59.48 288.58 3.68 -55.80 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.99 Total: 10.19 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 3.53 Total: -34.87 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -2.87 Total: -77.78 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -59.48 3.68 -55.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251305679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.960 kcal (2) G-P(sol) polarization free energy of solvation -59.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds