Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86802 * 119.99361 * 2 1 4 4 H 1.48497 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47136 * 299.99911 * 3 2 1 6 6 H 1.48503 * 109.47305 * 60.00027 * 3 2 1 7 7 C 1.39904 * 120.00587 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00519 * 162.54237 * 7 2 1 9 9 C 1.41138 * 119.99687 * 342.26109 * 7 2 1 10 10 C 1.40835 * 120.25568 * 335.00821 * 9 7 2 11 11 C 1.36431 * 120.00454 * 179.84708 * 10 9 7 12 12 C 1.38927 * 120.58714 * 0.38386 * 11 10 9 13 13 Cl 1.73602 * 119.73449 * 179.82219 * 12 11 10 14 14 C 1.38837 * 120.53997 * 359.83647 * 12 11 10 15 15 C 1.38896 * 119.85816 * 359.97438 * 14 12 11 16 16 O 1.36170 * 108.81526 * 179.97438 * 15 14 12 17 17 C 1.44006 * 105.50305 * 342.76139 * 16 15 14 18 18 O 1.36569 * 131.51742 * 179.97438 * 14 12 11 19 19 H 0.96993 * 120.00602 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.99687 * 0.02562 * 10 9 7 21 21 H 1.08001 * 119.70343 * 180.21968 * 11 10 9 22 22 H 1.08995 * 110.58495 * 268.47646 * 17 16 15 23 23 H 1.08996 * 110.71481 * 145.62820 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 3.7027 1.3466 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8839 2.3966 1.2125 7 6 2.0085 -1.2115 -0.0005 8 1 3.0512 -1.2329 -0.2811 9 6 1.3532 -2.4050 0.3713 10 6 0.2271 -2.3626 1.2161 11 6 -0.4043 -3.5191 1.5698 12 6 0.0579 -4.7460 1.1102 13 17 -0.7597 -6.2043 1.5779 14 6 1.1687 -4.8154 0.2801 15 6 1.8248 -3.6504 -0.0960 16 8 2.8720 -3.9771 -0.9027 17 6 3.0981 -5.3832 -0.6896 18 8 1.8055 -5.8791 -0.2928 19 1 -0.4851 0.8399 -0.0004 20 1 -0.1383 -1.4143 1.5816 21 1 -1.2695 -3.4807 2.2150 22 1 3.8286 -5.5380 0.1043 23 1 3.4268 -5.8647 -1.6105 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258142886.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = -71.911703 kcal Electronic energy + Delta-G solvation = -13230.299201 eV Core-core repulsion = 10648.414367 eV Total energy + Delta-G solvation = -2581.884835 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.63173 -38.62116 -37.32480 -36.65025 -35.36610 -31.51012 -30.50503 -27.24568 -26.43147 -23.46422 -23.04772 -19.71603 -18.58009 -18.11538 -17.90781 -16.96322 -16.66545 -15.31204 -15.14112 -14.77648 -14.58920 -13.98893 -13.72962 -13.66547 -13.17593 -12.86708 -12.49798 -12.40497 -12.24793 -11.72567 -11.65545 -11.39598 -10.99891 -9.35505 -8.91530 -8.69951 -6.47473 0.58744 0.69505 1.40171 1.46068 1.54134 1.56205 2.15261 2.18611 2.51786 2.93516 3.37591 4.01164 4.15948 4.27276 4.46162 4.61207 4.90832 5.03291 5.16398 5.34432 5.59737 5.72479 5.97355 6.16465 6.47692 6.68814 6.76596 8.17537 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.035934 B = 0.009676 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.013939 B = 2892.921167 C = 3592.130816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.040 3.960 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.076 0.924 9 C 0.107 3.893 10 C -0.161 4.161 11 C -0.075 4.075 12 C -0.145 4.145 13 Cl -0.090 7.090 14 C 0.061 3.939 15 C -0.113 4.113 16 O -0.328 6.328 17 C 0.204 3.796 18 O -0.327 6.327 19 H 0.298 0.702 20 H 0.135 0.865 21 H 0.142 0.858 22 H 0.087 0.913 23 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -2.191 1.664 3.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.094 0.906 9 C 0.104 3.896 10 C -0.180 4.180 11 C -0.094 4.094 12 C -0.173 4.173 13 Cl -0.062 7.062 14 C 0.016 3.984 15 C -0.157 4.157 16 O -0.246 6.246 17 C 0.093 3.907 18 O -0.244 6.244 19 H 0.110 0.890 20 H 0.153 0.847 21 H 0.160 0.840 22 H 0.104 0.896 23 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.807 -2.276 1.498 3.269 hybrid contribution 0.339 0.216 -0.176 0.439 sum 2.146 -2.060 1.322 3.255 Atomic orbital electron populations 1.69824 1.08890 1.31661 1.32411 1.26814 0.95617 1.04561 0.90839 0.85051 0.79184 0.75473 0.79453 1.18514 1.18838 1.17907 1.19763 0.98318 0.91982 1.39719 0.90575 1.17195 0.92702 0.89535 0.90217 1.20844 0.98200 0.97757 1.01243 1.20380 0.99820 0.89282 0.99946 1.19304 0.99984 0.87812 1.10207 1.98229 1.78924 1.37283 1.91756 1.19311 0.96586 0.85263 0.97277 1.19886 0.96418 0.94831 1.04584 1.87101 1.49781 1.26268 1.61447 1.25874 0.84635 0.77488 1.02730 1.87216 1.29454 1.33105 1.74589 0.89031 0.84734 0.84039 0.89556 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.49 10.98 21.82 0.24 -38.25 14 2 C 0.04 1.87 5.13 85.24 0.44 2.31 14 3 Si 0.99 35.49 29.59 68.60 2.03 37.52 14 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 14 5 H -0.26 -9.09 7.11 99.48 0.71 -8.38 14 6 H -0.26 -8.55 7.11 99.48 0.71 -7.84 14 7 C -0.47 -24.59 9.04 23.39 0.21 -24.38 14 8 H 0.08 3.99 7.90 -2.91 -0.02 3.97 14 9 C 0.11 5.68 5.58 -21.22 -0.12 5.56 14 10 C -0.16 -7.91 8.64 22.48 0.19 -7.72 14 11 C -0.08 -3.35 9.74 22.01 0.21 -3.13 14 12 C -0.15 -6.58 6.35 22.58 0.14 -6.43 14 13 Cl -0.09 -3.48 28.94 -2.72 -0.08 -3.56 14 14 C 0.06 2.91 6.93 22.57 0.16 3.06 14 15 C -0.11 -5.80 6.91 23.14 0.16 -5.64 14 16 O -0.33 -15.44 11.38 -72.22 -0.82 -16.26 14 17 C 0.20 7.29 8.90 113.37 1.01 8.30 14 18 O -0.33 -14.02 11.41 -76.86 -0.88 -14.90 14 19 H 0.30 12.59 8.30 -92.71 -0.77 11.82 14 20 H 0.14 6.59 6.18 -2.91 -0.02 6.57 14 21 H 0.14 5.36 8.06 -2.91 -0.02 5.34 14 22 H 0.09 2.67 8.14 -2.39 -0.02 2.65 14 23 H 0.16 4.08 8.14 -2.39 -0.02 4.06 14 Total: -1.00 -58.22 227.56 4.15 -54.07 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.25 Total: 9.45 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 2.41 Total: -28.08 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.24 Total: -38.25 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.70 Total: -31.16 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -0.08 Total: -3.56 kcal Total: -58.22 4.15 -54.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258142886.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.841 kcal (2) G-P(sol) polarization free energy of solvation -58.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds