Wall clock time and date at job start Mon Mar 30 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47041 * 2 1 4 4 C 1.46909 * 110.99939 * 66.04485 * 3 2 1 5 5 C 1.52994 * 109.47263 * 194.53076 * 4 3 2 6 6 C 1.46900 * 111.00299 * 189.99998 * 3 2 1 7 7 H 1.08999 * 109.47401 * 188.96931 * 6 3 2 8 8 C 1.53004 * 109.46604 * 308.96849 * 6 3 2 9 9 C 1.52998 * 109.46732 * 179.97438 * 8 6 3 10 10 C 1.53007 * 109.47405 * 300.00125 * 9 8 6 11 11 C 1.52998 * 109.46912 * 59.99897 * 10 9 8 12 12 C 1.52995 * 109.47033 * 68.96533 * 6 3 2 13 13 H 1.08999 * 109.47352 * 300.00428 * 12 6 3 14 14 C 1.50704 * 109.47144 * 60.00538 * 12 6 3 15 15 H 1.08005 * 119.99980 * 33.14387 * 14 12 6 16 16 C 1.37871 * 120.00207 * 213.15277 * 14 12 6 17 17 N 1.31519 * 120.00033 * 183.71057 * 16 14 12 18 18 Si 1.86799 * 119.99995 * 3.70698 * 16 14 12 19 19 H 1.48497 * 109.47233 * 84.84305 * 18 16 14 20 20 H 1.48504 * 109.47375 * 204.84271 * 18 16 14 21 21 H 1.48508 * 109.47159 * 324.84032 * 18 16 14 22 22 H 1.08999 * 109.47284 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47248 * 299.99888 * 1 2 3 24 24 H 1.09003 * 109.47079 * 60.00135 * 1 2 3 25 25 H 1.08997 * 109.46843 * 240.00441 * 2 1 3 26 26 H 1.08998 * 109.47238 * 120.00311 * 2 1 3 27 27 H 1.08997 * 109.47120 * 314.53447 * 4 3 2 28 28 H 1.09002 * 109.46833 * 74.53009 * 4 3 2 29 29 H 1.09008 * 109.47313 * 293.79558 * 5 4 3 30 30 H 1.09000 * 109.46945 * 53.79195 * 5 4 3 31 31 H 1.08994 * 109.47141 * 173.79273 * 5 4 3 32 32 H 1.08999 * 109.47159 * 299.99745 * 8 6 3 33 33 H 1.08999 * 109.47175 * 59.99944 * 8 6 3 34 34 H 1.09000 * 109.47381 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.47295 * 60.00006 * 9 8 6 36 36 H 1.08999 * 109.47042 * 300.00098 * 10 9 8 37 37 H 1.09000 * 109.47267 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.46794 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.47103 * 60.00239 * 11 10 9 40 40 H 0.97002 * 119.99691 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2534 5 6 1.8630 3.5752 1.0843 6 6 3.4685 1.4312 -0.2381 7 1 3.8312 2.4462 -0.0761 8 6 4.1746 0.4771 0.7273 9 6 5.6835 0.5247 0.4789 10 6 5.9768 0.1018 -0.9620 11 6 5.2707 1.0559 -1.9273 12 6 3.7622 1.0085 -1.6789 13 1 3.3995 -0.0065 -1.8410 14 6 3.0667 1.9483 -2.6298 15 1 2.9433 2.9887 -2.3672 16 6 2.5878 1.4800 -3.8349 17 7 2.0462 2.3137 -4.6960 18 14 2.7081 -0.3385 -4.2447 19 1 1.5451 -1.0551 -3.6625 20 1 2.7105 -0.5146 -5.7192 21 1 3.9646 -0.8915 -3.6782 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.6294 1.8593 1.5020 28 1 2.3142 1.7059 2.0553 29 1 2.9220 3.7928 0.9450 30 1 1.3042 3.9175 0.2133 31 1 1.5003 4.0899 1.9740 32 1 3.9653 0.7781 1.7538 33 1 3.8119 -0.5380 0.5652 34 1 6.1867 -0.1546 1.1669 35 1 6.0465 1.5397 0.6406 36 1 5.6139 -0.9132 -1.1238 37 1 7.0518 0.1362 -1.1391 38 1 5.4793 0.7543 -2.9538 39 1 5.6336 2.0708 -1.7656 40 1 1.7096 1.9842 -5.5440 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259590623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:20 Heat of formation + Delta-G solvation = -16.268618 kcal Electronic energy + Delta-G solvation = -17256.313037 eV Core-core repulsion = 14877.182944 eV Total energy + Delta-G solvation = -2379.130094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.06320 -35.68113 -32.62473 -31.31347 -30.20106 -29.95687 -26.94255 -24.41603 -22.69613 -22.33445 -20.72880 -19.80602 -18.18684 -16.65520 -15.64766 -14.84218 -14.30050 -14.09156 -13.76588 -13.46515 -13.40487 -12.97750 -12.41005 -12.22503 -12.03356 -11.58594 -11.44841 -11.23668 -11.05775 -10.99651 -10.86664 -10.72997 -10.51907 -10.30624 -10.11468 -9.94580 -9.66828 -9.49080 -9.06153 -8.74247 -8.32719 -7.31313 -5.87454 -3.80249 3.37429 3.45754 3.46522 4.57389 4.58856 5.27488 5.35828 5.45718 5.47135 5.56660 5.64248 5.71003 5.82269 5.91350 5.98515 6.01439 6.09879 6.13222 6.14250 6.21662 6.27839 6.33247 6.44563 6.50469 6.52164 6.59110 6.70226 6.73870 6.76344 6.85698 6.91244 7.08311 7.33633 7.47919 7.88845 7.98256 8.09325 8.74754 9.20617 9.77263 11.27274 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.013762 C = 0.010722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.132163 B = 2034.146504 C = 2610.789035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.504 5.504 4 C 0.046 3.954 5 C -0.144 4.144 6 C 0.102 3.898 7 H 0.074 0.926 8 C -0.155 4.155 9 C -0.108 4.108 10 C -0.124 4.124 11 C -0.112 4.112 12 C 0.024 3.976 13 H 0.028 0.972 14 C -0.470 4.470 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.909 5.909 18 Si 0.866 3.134 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.267 1.267 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -4.062 11.331 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 N -0.226 5.226 4 C -0.082 4.082 5 C -0.201 4.201 6 C -0.006 4.006 7 H 0.092 0.908 8 C -0.194 4.194 9 C -0.146 4.146 10 C -0.161 4.161 11 C -0.150 4.150 12 C 0.005 3.995 13 H 0.046 0.954 14 C -0.508 4.508 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.549 5.549 18 Si 0.695 3.305 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.192 1.192 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.874 -3.791 10.758 11.559 hybrid contribution 0.383 -1.501 0.330 1.584 sum 2.257 -5.292 11.088 12.491 Atomic orbital electron populations 1.21813 0.95918 1.00454 1.02306 1.22011 0.95214 0.90355 0.99922 1.62125 1.14343 1.14344 1.31838 1.22107 0.99885 0.95160 0.91053 1.21738 1.01964 0.95169 1.01261 1.21779 0.84951 0.97881 0.96022 0.90818 1.22328 0.96332 1.01223 0.99559 1.21394 0.95778 1.00648 0.96751 1.21660 0.99165 0.99935 0.95363 1.21845 0.98055 0.97693 0.97446 1.19166 0.91649 0.96943 0.91735 0.95405 1.20771 1.34038 0.96525 0.99449 0.90990 1.24942 0.95345 0.96438 0.96335 1.69899 1.42110 1.34145 1.08731 0.87060 0.78868 0.87696 0.76915 1.20451 1.22107 1.19224 0.93379 0.93307 0.91405 0.90661 0.96195 0.91535 0.96039 0.92989 0.91329 0.93604 0.93345 0.92404 0.93453 0.92430 0.93097 0.93400 0.92891 0.92832 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.87 37.16 0.37 -2.03 16 2 C 0.05 0.96 4.53 -3.83 -0.02 0.94 16 3 N -0.50 -9.76 3.98 -226.65 -0.90 -10.66 16 4 C 0.05 0.75 5.47 -3.82 -0.02 0.73 16 5 C -0.14 -2.27 9.83 37.15 0.37 -1.90 16 6 C 0.10 2.01 1.51 -67.71 -0.10 1.90 16 7 H 0.07 1.50 6.37 -51.93 -0.33 1.17 16 8 C -0.16 -2.59 4.43 -26.73 -0.12 -2.71 16 9 C -0.11 -1.67 5.92 -26.73 -0.16 -1.83 16 10 C -0.12 -2.12 5.92 -26.73 -0.16 -2.28 16 11 C -0.11 -2.32 5.15 -26.76 -0.14 -2.46 16 12 C 0.02 0.55 1.10 -91.80 -0.10 0.45 16 13 H 0.03 0.66 3.79 -51.93 -0.20 0.46 16 14 C -0.47 -12.89 8.46 -34.44 -0.29 -13.18 16 15 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 18 Si 0.87 21.84 26.68 -169.99 -4.53 17.31 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.27 -6.43 6.72 56.52 0.38 -6.05 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.71 6.30 -51.93 -0.33 0.38 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.08 1.54 6.23 -51.93 -0.32 1.21 16 26 H 0.02 0.33 6.83 -51.93 -0.35 -0.03 16 27 H 0.07 1.01 5.97 -51.93 -0.31 0.70 16 28 H 0.02 0.33 6.45 -51.93 -0.33 -0.01 16 29 H 0.05 0.84 6.74 -51.92 -0.35 0.49 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.75 6.64 -51.93 -0.34 0.40 16 33 H 0.06 0.98 6.54 -51.93 -0.34 0.64 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 1.17 7.71 -51.93 -0.40 0.77 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 292.40 15.07 4.41 4.41 Total: -1.00 -29.31 292.40 -7.72 -37.03 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.00 Total: -0.28 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -0.47 Total: -20.49 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.13 Total: -37.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.53 Total: 17.31 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.31 -7.72 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.762 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds