Wall clock time and date at job start Mon Mar 30 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47041 * 2 1 4 4 C 1.46909 * 110.99939 * 66.04485 * 3 2 1 5 5 C 1.52994 * 109.47263 * 194.53076 * 4 3 2 6 6 C 1.46900 * 111.00299 * 189.99998 * 3 2 1 7 7 H 1.08999 * 109.47401 * 188.96931 * 6 3 2 8 8 C 1.53004 * 109.46604 * 308.96849 * 6 3 2 9 9 C 1.52998 * 109.46732 * 179.97438 * 8 6 3 10 10 C 1.53007 * 109.47405 * 300.00125 * 9 8 6 11 11 C 1.52998 * 109.46912 * 59.99897 * 10 9 8 12 12 C 1.52995 * 109.47033 * 68.96533 * 6 3 2 13 13 H 1.08999 * 109.47352 * 300.00428 * 12 6 3 14 14 C 1.50704 * 109.47144 * 60.00538 * 12 6 3 15 15 H 1.08005 * 119.99980 * 33.14387 * 14 12 6 16 16 C 1.37871 * 120.00207 * 213.15277 * 14 12 6 17 17 N 1.31519 * 120.00033 * 183.71057 * 16 14 12 18 18 Si 1.86799 * 119.99995 * 3.70698 * 16 14 12 19 19 H 1.48497 * 109.47233 * 84.84305 * 18 16 14 20 20 H 1.48504 * 109.47375 * 204.84271 * 18 16 14 21 21 H 1.48508 * 109.47159 * 324.84032 * 18 16 14 22 22 H 1.08999 * 109.47284 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47248 * 299.99888 * 1 2 3 24 24 H 1.09003 * 109.47079 * 60.00135 * 1 2 3 25 25 H 1.08997 * 109.46843 * 240.00441 * 2 1 3 26 26 H 1.08998 * 109.47238 * 120.00311 * 2 1 3 27 27 H 1.08997 * 109.47120 * 314.53447 * 4 3 2 28 28 H 1.09002 * 109.46833 * 74.53009 * 4 3 2 29 29 H 1.09008 * 109.47313 * 293.79558 * 5 4 3 30 30 H 1.09000 * 109.46945 * 53.79195 * 5 4 3 31 31 H 1.08994 * 109.47141 * 173.79273 * 5 4 3 32 32 H 1.08999 * 109.47159 * 299.99745 * 8 6 3 33 33 H 1.08999 * 109.47175 * 59.99944 * 8 6 3 34 34 H 1.09000 * 109.47381 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.47295 * 60.00006 * 9 8 6 36 36 H 1.08999 * 109.47042 * 300.00098 * 10 9 8 37 37 H 1.09000 * 109.47267 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.46794 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.47103 * 60.00239 * 11 10 9 40 40 H 0.97002 * 119.99691 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2534 5 6 1.8630 3.5752 1.0843 6 6 3.4685 1.4312 -0.2381 7 1 3.8312 2.4462 -0.0761 8 6 4.1746 0.4771 0.7273 9 6 5.6835 0.5247 0.4789 10 6 5.9768 0.1018 -0.9620 11 6 5.2707 1.0559 -1.9273 12 6 3.7622 1.0085 -1.6789 13 1 3.3995 -0.0065 -1.8410 14 6 3.0667 1.9483 -2.6298 15 1 2.9433 2.9887 -2.3672 16 6 2.5878 1.4800 -3.8349 17 7 2.0462 2.3137 -4.6960 18 14 2.7081 -0.3385 -4.2447 19 1 1.5451 -1.0551 -3.6625 20 1 2.7105 -0.5146 -5.7192 21 1 3.9646 -0.8915 -3.6782 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.6294 1.8593 1.5020 28 1 2.3142 1.7059 2.0553 29 1 2.9220 3.7928 0.9450 30 1 1.3042 3.9175 0.2133 31 1 1.5003 4.0899 1.9740 32 1 3.9653 0.7781 1.7538 33 1 3.8119 -0.5380 0.5652 34 1 6.1867 -0.1546 1.1669 35 1 6.0465 1.5397 0.6406 36 1 5.6139 -0.9132 -1.1238 37 1 7.0518 0.1362 -1.1391 38 1 5.4793 0.7543 -2.9538 39 1 5.6336 2.0708 -1.7656 40 1 1.7096 1.9842 -5.5440 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:20 Heat of formation + Delta-G solvation = -34.245405 kcal Electronic energy + Delta-G solvation = -17257.092569 eV Core-core repulsion = 14877.182944 eV Total energy + Delta-G solvation = -2379.909626 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55492 -37.12597 -34.67641 -32.64718 -31.94583 -31.39960 -28.42151 -26.31219 -24.04784 -23.75295 -22.35125 -21.27272 -19.71840 -18.78760 -17.17543 -16.29810 -16.06494 -15.49460 -15.24010 -14.92287 -14.85763 -14.57261 -14.43236 -13.67824 -13.42949 -12.99272 -12.93619 -12.83925 -12.57194 -12.47350 -12.38074 -12.29095 -12.05639 -11.87697 -11.64217 -11.55220 -11.37031 -11.09965 -10.73146 -10.63239 -10.49147 -8.71419 -8.12847 -6.07943 1.34822 1.35560 1.44956 2.43480 3.15715 3.30947 3.91100 4.06298 4.13796 4.23186 4.31686 4.38143 4.45499 4.53051 4.65101 4.66967 4.70084 4.74929 4.83048 4.86523 4.90380 4.98930 5.06097 5.08817 5.20127 5.23409 5.27680 5.33273 5.37315 5.41598 5.45449 5.51189 5.66770 5.75288 5.87950 6.47900 6.56729 6.62983 6.95407 7.52436 9.05848 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.013762 C = 0.010722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.132163 B = 2034.146504 C = 2610.789035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 N -0.539 5.539 4 C 0.048 3.952 5 C -0.140 4.140 6 C 0.106 3.894 7 H 0.059 0.941 8 C -0.147 4.147 9 C -0.105 4.105 10 C -0.118 4.118 11 C -0.112 4.112 12 C 0.023 3.977 13 H 0.023 0.977 14 C -0.456 4.456 15 H 0.025 0.975 16 C 0.008 3.992 17 N -0.962 5.962 18 Si 0.926 3.074 19 H -0.272 1.272 20 H -0.298 1.298 21 H -0.247 1.247 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.047 0.953 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 -6.156 14.070 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 N -0.262 5.262 4 C -0.079 4.079 5 C -0.197 4.197 6 C -0.002 4.002 7 H 0.077 0.923 8 C -0.186 4.186 9 C -0.143 4.143 10 C -0.155 4.155 11 C -0.151 4.151 12 C 0.004 3.996 13 H 0.041 0.959 14 C -0.495 4.495 15 H 0.043 0.957 16 C -0.187 4.187 17 N -0.605 5.605 18 Si 0.753 3.247 19 H -0.197 1.197 20 H -0.225 1.225 21 H -0.170 1.170 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.885 -5.895 13.526 15.035 hybrid contribution 0.055 -0.721 -0.492 0.875 sum 2.940 -6.617 13.035 14.911 Atomic orbital electron populations 1.21777 0.94823 1.01717 1.01669 1.22001 0.96139 0.89675 0.99658 1.62037 1.14275 1.15577 1.34296 1.22153 1.01002 0.94626 0.90138 1.21708 1.00980 0.95707 1.01327 1.21556 0.85987 0.97918 0.94739 0.92303 1.22220 0.96777 1.00110 0.99453 1.21403 0.95079 1.01737 0.96053 1.21595 1.00022 0.98557 0.95329 1.21729 0.96937 0.98685 0.97747 1.19156 0.92424 0.95160 0.92878 0.95866 1.20996 1.33080 0.95307 1.00105 0.95653 1.25713 0.95627 1.00869 0.96443 1.70070 1.44585 1.36383 1.09450 0.86066 0.79870 0.82437 0.76377 1.19722 1.22496 1.17021 0.91195 0.91329 0.94592 0.93469 0.93652 0.90270 0.94044 0.93892 0.94478 0.90427 0.91321 0.92249 0.90291 0.92056 0.92956 0.91089 0.94817 0.93458 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.87 71.98 0.71 -3.69 16 2 C 0.05 1.82 4.53 86.30 0.39 2.21 16 3 N -0.54 -20.38 3.98 -870.99 -3.46 -23.84 16 4 C 0.05 1.46 5.47 86.30 0.47 1.93 16 5 C -0.14 -4.29 9.83 71.98 0.71 -3.59 16 6 C 0.11 4.08 1.51 44.92 0.07 4.14 16 7 H 0.06 2.40 6.37 -2.39 -0.02 2.38 16 8 C -0.15 -4.36 4.43 30.59 0.14 -4.23 16 9 C -0.10 -2.81 5.92 30.60 0.18 -2.63 16 10 C -0.12 -3.65 5.92 30.60 0.18 -3.47 16 11 C -0.11 -4.58 5.15 30.58 0.16 -4.42 16 12 C 0.02 1.04 1.10 -11.56 -0.01 1.03 16 13 H 0.02 1.08 3.79 -2.39 -0.01 1.08 16 14 C -0.46 -26.07 8.46 25.60 0.22 -25.85 16 15 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 16 C 0.01 0.45 5.47 84.65 0.46 0.91 16 17 N -0.96 -62.28 13.96 21.45 0.30 -61.98 16 18 Si 0.93 45.95 26.68 68.60 1.83 47.78 16 19 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 21 H -0.25 -11.27 6.72 99.48 0.67 -10.60 16 22 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.07 1.82 6.30 -2.39 -0.02 1.80 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.87 6.23 -2.39 -0.01 1.86 16 26 H 0.05 1.33 6.83 -2.39 -0.02 1.31 16 27 H 0.08 2.18 5.97 -2.39 -0.01 2.17 16 28 H 0.04 1.11 6.45 -2.39 -0.02 1.09 16 29 H 0.04 1.37 6.74 -2.38 -0.02 1.35 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.80 6.64 -2.39 -0.02 1.78 16 33 H 0.06 1.77 6.54 -2.39 -0.02 1.76 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.03 1.46 7.71 -2.39 -0.02 1.44 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -66.46 292.40 3.28 -63.17 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.95 Total: 12.51 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.67 Total: -37.64 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.16 Total: -85.82 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.83 Total: 47.78 kcal Total: -66.46 3.28 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.927 kcal (2) G-P(sol) polarization free energy of solvation -66.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds