Wall clock time and date at job start Mon Mar 30 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46906 * 109.47204 * 2 1 4 4 C 1.46902 * 110.99944 * 161.04865 * 3 2 1 5 5 C 1.52991 * 109.47218 * 288.11289 * 4 3 2 6 6 C 1.46900 * 110.99735 * 285.00476 * 3 2 1 7 7 H 1.09000 * 109.47210 * 54.99857 * 6 3 2 8 8 C 1.52996 * 109.47087 * 294.99742 * 6 3 2 9 9 C 1.53007 * 109.47239 * 180.02562 * 8 6 3 10 10 C 1.52995 * 109.46904 * 59.99760 * 9 8 6 11 11 C 1.52996 * 109.47368 * 300.00160 * 10 9 8 12 12 C 1.53000 * 109.46918 * 174.99976 * 6 3 2 13 13 H 1.09000 * 109.47277 * 59.99923 * 12 6 3 14 14 C 1.50701 * 109.47056 * 300.00002 * 12 6 3 15 15 H 1.08000 * 120.00108 * 333.61191 * 14 12 6 16 16 C 1.37875 * 120.00291 * 153.61451 * 14 12 6 17 17 N 1.31519 * 119.99600 * 7.06459 * 16 14 12 18 18 Si 1.86792 * 120.00404 * 187.06797 * 16 14 12 19 19 H 1.48503 * 109.47349 * 179.97438 * 18 16 14 20 20 H 1.48508 * 109.47080 * 299.99911 * 18 16 14 21 21 H 1.48503 * 109.47039 * 59.99857 * 18 16 14 22 22 H 1.09000 * 109.47253 * 185.97279 * 1 2 3 23 23 H 1.08995 * 109.47368 * 305.97869 * 1 2 3 24 24 H 1.09000 * 109.47122 * 65.97569 * 1 2 3 25 25 H 1.09002 * 109.47402 * 240.00253 * 2 1 3 26 26 H 1.09004 * 109.47524 * 119.99905 * 2 1 3 27 27 H 1.09003 * 109.47087 * 48.11611 * 4 3 2 28 28 H 1.08998 * 109.46535 * 168.10888 * 4 3 2 29 29 H 1.09006 * 109.47406 * 186.83945 * 5 4 3 30 30 H 1.09006 * 109.47453 * 306.83547 * 5 4 3 31 31 H 1.09000 * 109.47377 * 66.83834 * 5 4 3 32 32 H 1.08999 * 109.47242 * 60.00428 * 8 6 3 33 33 H 1.09000 * 109.47190 * 300.00127 * 8 6 3 34 34 H 1.09000 * 109.46858 * 299.99993 * 9 8 6 35 35 H 1.08998 * 109.47282 * 179.97438 * 9 8 6 36 36 H 1.09008 * 109.46947 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47173 * 60.00426 * 10 9 8 38 38 H 1.09002 * 109.47588 * 299.99903 * 11 10 9 39 39 H 1.08999 * 109.47242 * 179.97438 * 11 10 9 40 40 H 0.96997 * 120.00464 * 355.17813 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4181 1.4490 0.4454 5 6 3.4875 1.1742 1.9488 6 6 1.8604 1.9997 -1.3247 7 1 0.8194 1.9221 -1.6384 8 6 2.7526 1.2744 -2.3340 9 6 2.5872 1.9150 -3.7137 10 6 2.9906 3.3891 -3.6431 11 6 2.0984 4.1143 -2.6338 12 6 2.2635 3.4739 -1.2546 13 1 3.3045 3.5515 -0.9409 14 6 1.3847 4.1883 -0.2604 15 1 0.3922 3.8168 -0.0522 16 6 1.8476 5.3162 0.3834 17 7 2.9972 5.8491 0.0312 18 14 0.8422 6.0872 1.7559 19 1 1.5540 7.2800 2.2811 20 1 -0.4850 6.4945 1.2286 21 1 0.6584 5.0997 2.8497 22 1 -0.3634 -1.0221 0.1069 23 1 -0.3634 0.6037 0.8316 24 1 -0.3633 0.4184 -0.9386 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0039 0.7005 -0.0882 28 1 3.8203 2.4406 0.2382 29 1 4.5053 1.3405 2.3020 30 1 2.8070 1.8455 2.4728 31 1 3.1998 0.1410 2.1431 32 1 2.4654 0.2241 -2.3840 33 1 3.7936 1.3520 -2.0203 34 1 1.5462 1.8378 -4.0276 35 1 3.2232 1.3986 -4.4326 36 1 2.8723 3.8456 -4.6259 37 1 4.0315 3.4663 -3.3292 38 1 1.0574 4.0372 -2.9477 39 1 2.3861 5.1645 -2.5832 40 1 3.5523 5.4103 -0.6322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259590636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:22 Heat of formation + Delta-G solvation = -22.097390 kcal Electronic energy + Delta-G solvation = -17230.607466 eV Core-core repulsion = 14851.224618 eV Total energy + Delta-G solvation = -2379.382848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.02773 -35.61470 -32.98577 -31.30183 -29.99036 -29.34292 -26.78159 -24.09397 -22.71342 -22.17760 -21.04180 -19.81769 -18.26635 -16.72628 -15.39809 -14.77422 -14.01671 -13.88886 -13.74707 -13.58569 -13.40640 -13.22804 -12.35023 -12.04522 -11.70608 -11.50133 -11.39340 -11.25661 -11.05837 -10.93099 -10.72052 -10.57516 -10.46540 -10.14873 -10.05564 -9.95415 -9.84674 -9.54404 -8.89936 -8.33877 -8.06533 -7.30879 -6.15175 -3.79572 3.53861 3.57382 3.74586 4.62069 4.68769 5.30468 5.43010 5.49360 5.54491 5.62670 5.65260 5.72749 5.87552 5.94703 5.99028 6.07679 6.14466 6.15581 6.20859 6.27992 6.32290 6.36311 6.43342 6.51713 6.60378 6.65823 6.69739 6.80600 6.82794 6.92460 7.01436 7.20351 7.49478 7.64502 7.97980 8.09625 8.46564 8.68709 9.09636 9.86858 11.24329 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.012847 C = 0.009623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.539159 B = 2178.978106 C = 2908.882160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 N -0.506 5.506 4 C 0.053 3.947 5 C -0.142 4.142 6 C 0.102 3.898 7 H 0.067 0.933 8 C -0.154 4.154 9 C -0.107 4.107 10 C -0.122 4.122 11 C -0.109 4.109 12 C 0.041 3.959 13 H 0.032 0.968 14 C -0.555 4.555 15 H 0.047 0.953 16 C 0.016 3.984 17 N -0.924 5.924 18 Si 1.062 2.938 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.289 1.289 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 -9.919 -2.362 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 N -0.228 5.228 4 C -0.074 4.074 5 C -0.200 4.200 6 C -0.006 4.006 7 H 0.085 0.915 8 C -0.194 4.194 9 C -0.145 4.145 10 C -0.160 4.160 11 C -0.148 4.148 12 C 0.022 3.978 13 H 0.050 0.950 14 C -0.593 4.593 15 H 0.065 0.935 16 C -0.186 4.186 17 N -0.562 5.562 18 Si 0.892 3.108 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.216 1.216 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.914 -8.363 -0.941 8.465 hybrid contribution 0.534 -1.861 -1.689 2.569 sum -0.380 -10.224 -2.630 10.564 Atomic orbital electron populations 1.21709 0.95618 1.00082 1.02527 1.22145 0.95945 0.90933 0.99578 1.62145 1.19020 1.14651 1.26994 1.22025 0.89196 1.01333 0.94886 1.21747 1.00939 1.00599 0.96687 1.21779 0.97725 0.96377 0.84719 0.91518 1.22312 1.01131 0.98881 0.97035 1.21388 1.00468 0.96414 0.96246 1.21651 1.00207 0.95017 0.99103 1.21751 0.97339 0.99498 0.96182 1.18925 0.97451 0.89000 0.92409 0.95014 1.21726 1.01656 1.12433 1.23500 0.93493 1.25607 0.98174 0.95115 0.99732 1.70814 1.12755 1.39049 1.33549 0.83634 0.74991 0.75954 0.76201 1.21327 1.21899 1.21593 0.93587 0.91774 0.93093 0.95571 0.91855 0.96672 0.89627 0.93318 0.91417 0.94012 0.93390 0.92600 0.92679 0.93570 0.93697 0.93020 0.93795 0.92566 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.15 0.37 -1.81 16 2 C 0.04 0.69 5.42 -3.82 -0.02 0.67 16 3 N -0.51 -9.95 3.96 -226.65 -0.90 -10.85 16 4 C 0.05 1.02 4.59 -3.83 -0.02 1.00 16 5 C -0.14 -2.42 9.86 37.15 0.37 -2.06 16 6 C 0.10 2.09 1.57 -67.71 -0.11 1.98 16 7 H 0.07 1.43 6.81 -51.93 -0.35 1.07 16 8 C -0.15 -2.73 4.58 -26.73 -0.12 -2.85 16 9 C -0.11 -1.78 5.92 -26.73 -0.16 -1.94 16 10 C -0.12 -2.25 5.92 -26.74 -0.16 -2.41 16 11 C -0.11 -2.42 5.10 -26.76 -0.14 -2.56 16 12 C 0.04 0.97 0.97 -91.79 -0.09 0.88 16 13 H 0.03 0.83 4.92 -51.93 -0.26 0.57 16 14 C -0.55 -15.06 7.90 -34.44 -0.27 -15.34 16 15 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 16 C 0.02 0.45 5.45 -17.82 -0.10 0.35 16 17 N -0.92 -27.48 13.63 55.43 0.76 -26.73 16 18 Si 1.06 25.73 29.91 -169.99 -5.08 20.64 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.81 7.03 -51.93 -0.37 0.44 16 25 H 0.03 0.41 5.90 -51.93 -0.31 0.11 16 26 H 0.06 0.97 6.35 -51.93 -0.33 0.64 16 27 H 0.02 0.27 7.14 -51.93 -0.37 -0.10 16 28 H 0.09 1.90 5.68 -51.93 -0.29 1.60 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.04 0.63 6.76 -51.93 -0.35 0.27 16 32 H 0.05 0.78 6.26 -51.93 -0.32 0.46 16 33 H 0.06 1.02 6.76 -51.93 -0.35 0.66 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.38 7.78 -51.93 -0.40 0.97 16 40 H 0.27 7.86 6.36 -40.82 -0.26 7.60 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -28.46 294.86 -8.20 -36.66 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.98 Total: -0.10 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -0.44 Total: -24.07 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.14 Total: -37.58 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.46 -8.20 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.563 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds